|
Size: 2620
Comment:
|
Size: 2551
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 3: | Line 3: |
| = How to use the pathway and network analysis service = | = What to expect and how to use the pathway and network analysis service = |
| Line 7: | Line 7: |
| * Help at the experimental design stage if you are planning a genomics experiment. | |
| Line 8: | Line 9: |
| * We can help you at different stages: * at the experimental design stage * during the analysis: we offer training in data analysis and exploration * after an initial analysis is complete and any validation experiments have been performed, we can book a follow-up meeting to see if you need additional analyses or to help plan subsequent genomics experiments. |
* We also can help you at different steps during your data analysis by providing training in pathway analysis and exploration. * After an initial analysis is complete and any validation experiments have been performed, we can book follow-up meetings if you need additional analyses related to the initial analysis or to help plan subsequent genomics experiments. |
| Line 13: | Line 12: |
* '''If you are a member of OICR Cancer Stem Cell program''', you may use the service if * You are planning to generate 'omics' (e.g. gene expression) data * You have a large gene list derived from a large-scale omics project that is ready to be analyzed * You require training in pathway and network analysis |
|
| Line 27: | Line 21: |
| * [[CSCPathwayAnalysisService/SOP | You can see look at more details concerning our standard protocol and data requirements following this link ]] | * You can read [[CSCPathwayAnalysisService/SOP | STANDARD OPERATING PROCEDURE ]] to get more details concerning these different meetings and our standard protocol. |
| Line 32: | Line 26: |
| 1. Normal in person meetings are on Tuesdays. Let us know if this doesn't work for you. You can [[CSCPathwayAnalysisService/Calendar | check our meeting calendar to see available times]] (30 min to 60 minutes meeting) | 1. Normal in person meetings are on Tuesdays. Let us know if this doesn't work for you. You can check our meeting calendar to see available times (30 min to 60 minutes meeting): [[CSCPathwayAnalysisService/Calendar | LINK TO CALENDAR ]] |
| Line 34: | Line 28: |
| *For first-time meetings, please send a brief description of your project or a paper that best describes your work prior to the meeting. *If you booked an initial meeting, please [[CSCPathwayAnalysisService/SOP| read our standard operating procedure to know what to expect]] |
*For first-time meetings, seinding a brief description of your project or a paper that best describes your work prior to the meeting is very helpful. |
| Line 37: | Line 30: |
*[[CSCPathwayAnalysisService/Calendar | LINK TO CALENDAR ]] *[[CSCPathwayAnalysisService/SOP | LINK TO SERVICE SOP ]] |
== Data format requirements == * If we run the pathway and network analysis for you, we will let you know which data and data format we need from you to start our analysis. Getting the right format faster will reduce delay in the analysis process. * please read [[ CSCPathwayAnalysisService/Data| DATA REQUIREMENTS]] to see template and guidelines for gene expression data. |
What to expect and how to use the pathway and network analysis service
What can you expect from the service ?
- Help at the experimental design stage if you are planning a genomics experiment.
- We run pathway and network analysis for you and help to interpret the data.
- We also can help you at different steps during your data analysis by providing training in pathway analysis and exploration.
- After an initial analysis is complete and any validation experiments have been performed, we can book follow-up meetings if you need additional analyses related to the initial analysis or to help plan subsequent genomics experiments.
Please schedule an appointment with us:Consulting meeting If you are planning a genomics experiment and you need some advice concerning the experiment design. Typical time: 30-60 minutes
Analysis planning meeting If you have data ready to analyze and they have been already statistically analyzed. Typical time: 60 minutes
Training session If you want to do your own pathway and network analyses, we can explain how software tools and methods work, such as GSEA, Enrichment Map and GeneMANIA. Typical time: Regular training schedule is currently being planned. Individual or group sessions can be arranged.
You can read STANDARD OPERATING PROCEDURE to get more details concerning these different meetings and our standard protocol.
How to book an appointment
Normal in person meetings are on Tuesdays. Let us know if this doesn't work for you. You can check our meeting calendar to see available times (30 min to 60 minutes meeting): LINK TO CALENDAR
Send an e-mail to veronique.voisin@gmail.com with your preferred meeting time and the purpose of the meeting and wait for e-mail confirmation.
- For first-time meetings, seinding a brief description of your project or a paper that best describes your work prior to the meeting is very helpful.
Data format requirements
- If we run the pathway and network analysis for you, we will let you know which data and data format we need from you to start our analysis. Getting the right format faster will reduce delay in the analysis process.
please read DATA REQUIREMENTS to see template and guidelines for gene expression data.