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| == Overview == AutoAnnotate is a Cytoscape App that finds clusters and visually annotates them with labels and groups. These visualizations provide a concise visual summary which is helpful for network analysis and interpretation. AutoAnnotate started as a feature of the EnrichmentMap App but has since been extracted into its own standalone App. == Getting Started == Requirements * Java 8 * Cytoscape minimum version 3.3 * WordCloud minimum version 3.1.0 * clusterMaker2 minimum version 0.9.5 Installation * Install Cytoscape * If you don’t have Cytoscape please download the latest release from http://www.cytoscape.org/download.php and install it on your computer. * Install AutoAnnotate * Open Cytoscape * In the main menu select Apps > App Manager * In the App Manager select AutoAnnotate in the list of All Apps and click the Install button. * The WordCloud app will also be installed automatically along with AutoAnnotate * Install clusterMaker2 (optional, but highly recommended) * In the App Manager select clusterMaker2 in the list of All Apps and click the Install button. Alternatively AutoAnnotate and clusterMaker2 can be installed from the App Store website. * AutoAnnotate on the App Store: * clusterMaker2 on the App Store: http://apps.cytoscape.org/apps/clustermaker2 {{attachment:aa_user_guide_1.png||width=400}} |
The AutoAnnotate User Guide has been moved to [[http://autoannotate.readthedocs.io]] |
AutoAnnotate: User Guide
The AutoAnnotate User Guide has been moved to http://autoannotate.readthedocs.io