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| = Outline = | This tutorial has been moved to: http://enrichmentmap.readthedocs.io/en/docs-2.2/Tutorial_PA.html |
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| This quick tutorial will guide you through the creation of an additional gene-set on an pre-existing Enrichment Map. It can for example help to localize microRNA, transcription factors or drug targets in enriched pathways displayed on the map. The new gene-set that we want to add to the network is called the signature gene-set. To run this tutorial: * You need to have Cytoscape installed : minimally 2.6.3 must be installed but preferable to have the latest version of Cytoscape 2 (e.g. 2.8.3) * It does not work with Cytoscape 3 * Install the Enrichment Map plugin from the Cytoscape plugin manager. If you install it manually (e.g. if you need to install a new version that doesn't happen to be in the plugin manager yet), then it must be in the Cytoscape-[Version#]/plugins folder * You need to download the test data: [[attachment:gProfilerTutorial.zip]] |
This tutorial is based on the older 2.2 version of EnrichmentMap. Newer tutorials are available here: https://baderlab.github.io/Cytoscape_workflows/EnrichmentMapPipeline/ |
Enrichment Map Post Analysis Tutorial
This tutorial has been moved to: http://enrichmentmap.readthedocs.io/en/docs-2.2/Tutorial_PA.html
This tutorial is based on the older 2.2 version of EnrichmentMap. Newer tutorials are available here: https://baderlab.github.io/Cytoscape_workflows/EnrichmentMapPipeline/