Attachment 'EnrichmentMapPlugin_v1.0_src.zip'
DownloadFile Name Modified Size EnrichmentMapPlugin_v1.0/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/resources/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/resources/Graphics_for_Manual/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/resources/scripts/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/brainlib/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/mskcc/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/org/mskcc/colorgradient/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/prefuse/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/prefuse/data/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/prefuse/data/query/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/prefuse/util/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/src/prefuse/util/ui/ 2011-02-04 12:26:26 0 EnrichmentMapPlugin_v1.0/LICENSE.TXT 2011-02-04 12:26:26 24477 EnrichmentMapPlugin_v1.0/README.TXT 2011-02-04 12:26:26 4712 EnrichmentMapPlugin_v1.0/build.xml 2011-02-04 12:26:26 11053 EnrichmentMapPlugin_v1.0/plugin.props 2011-02-04 12:26:26 1721 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/EnrTable_12h_E2_v2.xls 2011-02-04 12:26:26 189155 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/EnrTable_12h_NT_v2.xls 2011-02-04 12:26:26 192584 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/EnrTable_24h_E2_v2.xls 2011-02-04 12:26:26 177759 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/EnrTable_24h_NT_v2.xls 2011-02-04 12:26:26 203030 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/GO_Hs_EG_f_hgu133p2_v2.gmt 2011-02-04 12:26:26 1029988 EnrichmentMapPlugin_v1.0/resources/EM_EBC_TestData/MCF7_ExprMx_v2.txt 2011-02-04 12:26:26 7237352 EnrichmentMapPlugin_v1.0/resources/Graphics_for_Manual/Hypergeometric_test.png 2011-02-04 12:26:26 5140 EnrichmentMapPlugin_v1.0/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot.ai 2011-02-04 12:26:26 239332 EnrichmentMapPlugin_v1.0/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot.png 2011-02-04 12:26:26 66384 EnrichmentMapPlugin_v1.0/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot_withLabels.png 2011-02-04 12:26:26 70047 EnrichmentMapPlugin_v1.0/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot_withLabels_smaller.png 2011-02-04 12:26:26 115400 EnrichmentMapPlugin_v1.0/resources/scripts/collapse_ExpressionMatrix.py 2011-02-04 12:26:26 50402 EnrichmentMapPlugin_v1.0/resources/scripts/disease_hub.py 2011-02-04 12:26:26 4344 EnrichmentMapPlugin_v1.0/resources/scripts/disease_hub_2.py 2011-02-04 12:26:26 5595 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/brainlib/AvgLinkHierarchicalClustering.java 2011-02-04 12:26:26 57454 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/brainlib/DistanceMatrix.java 2011-02-04 12:26:26 7308 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/brainlib/DistanceMetric.java 2011-02-04 12:26:26 2287 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/brainlib/HierarchicalClusteringResultTree.java 2011-02-04 12:26:26 9145 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/AboutPanel.java 2011-02-04 12:26:26 5797 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/BuildDiseaseSignatureTask.java 2011-02-04 12:26:26 31161 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/BuildEnrichmentMapActionListener.java 2011-02-04 12:26:26 3925 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/BuildEnrichmentMapTask.java 2011-02-04 12:26:26 12103 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/BuildPostAnalysisActionListener.java 2011-02-04 12:26:26 3891 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/CellHighlightRenderer.java 2011-02-04 12:26:26 1278 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/CollapsiblePanel.java 2011-02-04 12:26:26 17190 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ColorRenderer.java 2011-02-04 12:26:26 4059 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ColumnHeaderVerticalRenderer.java 2011-02-04 12:26:26 4467 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ColumnListener.java 2011-02-04 12:26:26 1278 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ComputeSimilarityTask.java 2011-02-04 12:26:26 10157 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/CosineDistance.java 2011-02-04 12:26:26 3516 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapActionListener.java 2011-02-04 12:26:26 8844 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapInputPanel.java 2011-02-04 12:26:26 93410 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapManager.java 2011-02-04 12:26:26 15162 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapParameters.java 2011-02-04 12:26:26 60190 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapVisualStyle.java 2011-02-04 12:26:26 16321 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentResult.java 2011-02-04 12:26:26 326 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EnrichmentResultFileReaderTask.java 2011-02-04 12:26:26 24193 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/Enrichment_Map_Plugin.java 2011-02-04 12:26:26 29684 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/EuclideanDistance.java 2011-02-04 12:26:26 2614 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ExpressionFileReaderTask.java 2011-02-04 12:26:26 13035 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GMTFileReaderTask.java 2011-02-04 12:26:26 9250 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GSEAResult.java 2011-02-04 12:26:26 7221 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GeneExpression.java 2011-02-04 12:26:26 8977 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GeneExpressionMatrix.java 2011-02-04 12:26:26 11288 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GeneSet.java 2011-02-04 12:26:26 5183 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GenericResult.java 2011-02-04 12:26:26 7479 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/GenesetSimilarity.java 2011-02-04 12:26:26 6447 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/HeatMapActionListener.java 2011-02-04 12:26:26 10231 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/HeatMapPanel.java 2011-02-04 12:26:26 65787 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/HeatMapParameters.java 2011-02-04 12:26:26 21681 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/HeatMapTableActionListener.java 2011-02-04 12:26:26 3700 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/HeatMapTableModel.java 2011-02-04 12:26:26 4444 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/HyperLinkOut.java 2011-02-04 12:26:26 3979 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/InitializeGenesetsOfInterestTask.java 2011-02-04 12:26:26 18995 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/JMultiLineToolTip.java 2011-02-04 12:26:26 5618 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/LegendPanel.java 2011-02-04 12:26:26 6275 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/LoadEnrichmentsPanelAction.java 2011-02-04 12:26:26 5426 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/LoadPostAnalysisPanelAction.java 2011-02-04 12:26:26 5328 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/Mapper.java 2011-02-04 12:26:26 2337 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ParametersPanel.java 2011-02-04 12:26:26 22008 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ParametersPanelActionListener.java 2011-02-04 12:26:26 2372 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/PearsonCorrelation.java 2011-02-04 12:26:26 4394 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/PostAnalysisInputPanel.java 2011-02-04 12:26:26 45871 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/PostAnalysisParameters.java 2011-02-04 12:26:26 20695 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/Ranking.java 2011-02-04 12:26:26 4225 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/RanksFileReaderTask.java 2011-02-04 12:26:26 14001 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/RowNumberTable.java 2011-02-04 12:26:26 2827 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/ShowAboutPanelAction.java 2011-02-04 12:26:26 2807 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/SignificantGene.java 2011-02-04 12:26:26 627 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/SliderBarActionListener.java 2011-02-04 12:26:26 16130 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/SliderBarPanel.java 2011-02-04 12:26:26 7503 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/TableHeader.java 2011-02-04 12:26:26 3584 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/TableSort.java 2011-02-04 12:26:26 10040 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/VisualizeEnrichmentMapTask.java 2011-02-04 12:26:26 32444 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_collapsed.gif 2011-02-04 12:26:26 85 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_down.gif 2011-02-04 12:26:26 60 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_expanded.gif 2011-02-04 12:26:26 78 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_left.gif 2011-02-04 12:26:26 88 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_right.gif 2011-02-04 12:26:26 57 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_up.gif 2011-02-04 12:26:26 60 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo.ai 2011-02-04 12:26:26 455631 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo.png 2011-02-04 12:26:26 9451 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_large.png 2011-02-04 12:26:26 20031 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_notext.ai 2011-02-04 12:26:26 440273 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_notext.png 2011-02-04 12:26:26 15106 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_notext_small.png 2011-02-04 12:26:26 626 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_small.png 2011-02-04 12:26:26 1867 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/node_border_color.ai 2011-02-04 12:26:26 447066 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/node_border_color.png 2011-02-04 12:26:26 9768 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/node_border_color_small.png 2011-02-04 12:26:26 3642 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/node_color.ai 2011-02-04 12:26:26 444726 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/node_color.png 2011-02-04 12:26:26 1482 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/resources/node_color_small.png 2011-02-04 12:26:26 2968 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/AllTests.java 2011-02-04 12:26:26 2508 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/FileReaderTest.java 2011-02-04 12:26:26 11468 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/HypergeometricTest.java 2011-02-04 12:26:26 3693 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/ExpressionTestFile.rnk 2011-02-04 12:26:26 94 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/ExpressionTestFile_edbrnk.rnk 2011-02-04 12:26:26 82 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/Expressiontestfile.gct 2011-02-04 12:26:26 4044 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/Expressiontestfile_comments.gct 2011-02-04 12:26:26 4288 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/Expressiontestfile_gseagct.gct 2011-02-04 12:26:26 4110 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/Genesetstestfile.gmt 2011-02-04 12:26:26 1073 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/HypergeometricTest_pvalues.csv 2011-02-04 12:26:26 12313 EnrichmentMapPlugin_v1.0/src/org/baderlab/csplugins/enrichmentmap/test/resources/generic_enr_5col.txt 2011-02-04 12:26:26 217 EnrichmentMapPlugin_v1.0/src/org/mskcc/colorgradient/ColorGradientMapper.java 2011-02-04 12:26:26 8673 EnrichmentMapPlugin_v1.0/src/org/mskcc/colorgradient/ColorGradientRange.java 2011-02-04 12:26:26 4550 EnrichmentMapPlugin_v1.0/src/org/mskcc/colorgradient/ColorGradientTheme.java 2011-02-04 12:26:26 7033 EnrichmentMapPlugin_v1.0/src/org/mskcc/colorgradient/ColorGradientWidget.java 2011-02-04 12:26:26 24545 EnrichmentMapPlugin_v1.0/src/prefuse/data/query/NumberRangeModel.java 2011-02-04 12:26:26 10522 EnrichmentMapPlugin_v1.0/src/prefuse/util/TypeLib.java 2011-02-04 12:26:26 8475 EnrichmentMapPlugin_v1.0/src/prefuse/util/ui/JRangeSlider.java 2011-02-04 12:26:26 26734 EnrichmentMapPlugin_v1.0/src/prefuse/util/ui/JRangeSliderExtended.java 2011-02-04 12:26:26 6520 EnrichmentMapPlugin_v1.0/src/prefuse/util/ui/ValuedRangeModel.java 2011-02-04 12:26:26 2780
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