Attachment 'EnrichmentMapPlugin_v1.2-DEV_src.zip'
DownloadFile Name Modified Size EnrichmentMapPlugin_v1.2/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/resources/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/resources/Graphics_for_Manual/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/resources/scripts/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/brainlib/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/mskcc/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/org/mskcc/colorgradient/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/prefuse/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/prefuse/data/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/prefuse/data/query/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/prefuse/util/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/src/prefuse/util/ui/ 2011-07-05 18:11:04 0 EnrichmentMapPlugin_v1.2/LICENSE.TXT 2011-07-05 18:11:04 24477 EnrichmentMapPlugin_v1.2/README.TXT 2011-07-05 18:11:04 4712 EnrichmentMapPlugin_v1.2/build.xml 2011-07-05 18:11:04 11053 EnrichmentMapPlugin_v1.2/plugin.props 2011-07-05 18:11:04 1721 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/EnrTable_12h_E2_v2.xls 2011-07-05 18:11:04 189155 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/EnrTable_12h_NT_v2.xls 2011-07-05 18:11:04 192584 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/EnrTable_24h_E2_v2.xls 2011-07-05 18:11:04 177759 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/EnrTable_24h_NT_v2.xls 2011-07-05 18:11:04 203030 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/GO_Hs_EG_f_hgu133p2_v2.gmt 2011-07-05 18:11:04 1029988 EnrichmentMapPlugin_v1.2/resources/EM_EBC_TestData/MCF7_ExprMx_v2.txt 2011-07-05 18:11:04 7237352 EnrichmentMapPlugin_v1.2/resources/Graphics_for_Manual/Hypergeometric_test.png 2011-07-05 18:11:04 5140 EnrichmentMapPlugin_v1.2/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot.ai 2011-07-05 18:11:04 239332 EnrichmentMapPlugin_v1.2/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot.png 2011-07-05 18:11:04 66384 EnrichmentMapPlugin_v1.2/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot_withLabels.png 2011-07-05 18:11:04 70047 EnrichmentMapPlugin_v1.2/resources/Graphics_for_Manual/PostAnalysis_InputPanel_SignatureHubs_screenshot_withLabels_smaller.png 2011-07-05 18:11:04 115400 EnrichmentMapPlugin_v1.2/resources/scripts/collapse_ExpressionMatrix.py 2011-07-05 18:11:04 50402 EnrichmentMapPlugin_v1.2/resources/scripts/disease_hub.py 2011-07-05 18:11:04 4344 EnrichmentMapPlugin_v1.2/resources/scripts/disease_hub_2.py 2011-07-05 18:11:04 5595 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/brainlib/AvgLinkHierarchicalClustering.java 2011-07-05 18:11:04 57454 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/brainlib/DistanceMatrix.java 2011-07-05 18:11:04 7308 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/brainlib/DistanceMetric.java 2011-07-05 18:11:04 2287 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/brainlib/HierarchicalClusteringResultTree.java 2011-07-05 18:11:04 9145 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/AboutPanel.java 2011-07-05 18:11:04 5767 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BuildBulkEnrichmentMapActionListener.java 2011-07-05 18:11:04 6731 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BuildDiseaseSignatureTask.java 2011-07-05 18:11:04 31335 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BuildEnrichmentMapActionListener.java 2011-07-05 18:11:04 4181 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BuildEnrichmentMapTask.java 2011-07-05 18:11:04 20173 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BuildGMTEnrichmentMapTask.java 2011-07-05 18:11:04 5664 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BuildPostAnalysisActionListener.java 2011-07-05 18:11:04 3861 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BulkEMCreationAction.java 2011-07-05 18:11:04 1090 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/BulkEMCreationPanel.java 2011-07-05 18:11:04 42616 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/CellHighlightRenderer.java 2011-07-05 18:11:04 1460 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/CollapsiblePanel.java 2011-07-05 18:11:04 17160 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ColorRenderer.java 2011-07-05 18:11:04 4029 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ColumnHeaderVerticalRenderer.java 2011-07-05 18:11:04 4437 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ColumnListener.java 2011-07-05 18:11:04 1278 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ComputeSimilarityTask.java 2011-07-05 18:11:04 31132 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/CosineDistance.java 2011-07-05 18:11:04 3516 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapActionListener.java 2011-07-05 18:11:04 8814 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapInputPanel.java 2011-07-05 18:11:04 98923 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapManager.java 2011-07-05 18:11:04 15132 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapParameters.java 2011-07-05 18:11:04 73618 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentMapVisualStyle.java 2011-07-05 18:11:04 17517 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentResult.java 2011-07-05 18:11:04 326 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EnrichmentResultFileReaderTask.java 2011-07-05 18:11:04 32919 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/Enrichment_Map_Plugin.java 2011-07-05 18:11:04 31530 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/EuclideanDistance.java 2011-07-05 18:11:04 2614 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ExpressionFileReaderTask.java 2011-07-05 18:11:04 13152 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GMTFileReaderTask.java 2011-07-05 18:11:04 9444 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GSEAResult.java 2011-07-05 18:11:04 7191 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GeneExpression.java 2011-07-05 18:11:04 8947 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GeneExpressionMatrix.java 2011-07-05 18:11:04 11599 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GeneSet.java 2011-07-05 18:11:04 5153 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GenericResult.java 2011-07-05 18:11:04 7449 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/GenesetSimilarity.java 2011-07-05 18:11:04 7952 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HeatMapActionListener.java 2011-07-05 18:11:04 10266 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HeatMapExporter.java 2011-07-05 18:11:04 3378 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HeatMapPanel.java 2011-07-05 18:11:04 83524 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HeatMapParameters.java 2011-07-05 18:11:04 21695 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HeatMapTableActionListener.java 2011-07-05 18:11:04 3700 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HeatMapTableModel.java 2011-07-05 18:11:04 4444 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/HyperLinkOut.java 2011-07-05 18:11:04 3979 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/InitializeGenesetsOfInterestTask.java 2011-07-05 18:11:04 22984 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/JMultiLineToolTip.java 2011-07-05 18:11:04 5588 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/LegendPanel.java 2011-07-05 18:11:04 6245 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/LoadEnrichmentsPanelAction.java 2011-07-05 18:11:04 5426 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/LoadPostAnalysisPanelAction.java 2011-07-05 18:11:04 5298 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/Mapper.java 2011-07-05 18:11:04 2337 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ParametersPanel.java 2011-07-05 18:11:04 22563 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ParametersPanelActionListener.java 2011-07-05 18:11:04 2372 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/PearsonCorrelation.java 2011-07-05 18:11:04 4394 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/PostAnalysisInputPanel.java 2011-07-05 18:11:04 45841 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/PostAnalysisParameters.java 2011-07-05 18:11:04 20665 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/Ranking.java 2011-07-05 18:11:04 4195 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/RanksFileReaderTask.java 2011-07-05 18:11:04 13973 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/RowNumberTable.java 2011-07-05 18:11:04 2827 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/ShowAboutPanelAction.java 2011-07-05 18:11:04 2777 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/SignificantGene.java 2011-07-05 18:11:04 627 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/SliderBarActionListener.java 2011-07-05 18:11:04 16100 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/SliderBarPanel.java 2011-07-05 18:11:04 7473 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/TableHeader.java 2011-07-05 18:11:04 3584 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/TableSort.java 2011-07-05 18:11:04 10040 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/VisualizeEnrichmentMapTask.java 2011-07-05 18:11:04 36251 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_collapsed.gif 2011-07-05 18:11:04 85 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_down.gif 2011-07-05 18:11:04 60 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_expanded.gif 2011-07-05 18:11:04 78 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_left.gif 2011-07-05 18:11:04 88 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_right.gif 2011-07-05 18:11:04 57 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/arrow_up.gif 2011-07-05 18:11:04 60 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo.ai 2011-07-05 18:11:04 455631 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo.png 2011-07-05 18:11:04 9451 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_large.png 2011-07-05 18:11:04 20031 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_notext.ai 2011-07-05 18:11:04 440273 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_notext.png 2011-07-05 18:11:04 15106 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_notext_small.png 2011-07-05 18:11:04 626 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/enrichmentmap_logo_small.png 2011-07-05 18:11:04 1867 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/node_border_color.ai 2011-07-05 18:11:04 447066 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/node_border_color.png 2011-07-05 18:11:04 9768 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/node_border_color_small.png 2011-07-05 18:11:04 3642 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/node_color.ai 2011-07-05 18:11:04 444726 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/node_color.png 2011-07-05 18:11:04 1482 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/resources/node_color_small.png 2011-07-05 18:11:04 2968 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/AllTests.java 2011-07-05 18:11:04 2508 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/FileReaderTest.java 2011-07-05 18:11:04 11468 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/HypergeometricTest.java 2011-07-05 18:11:04 3693 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/ExpressionTestFile.rnk 2011-07-05 18:11:04 94 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/ExpressionTestFile_edbrnk.rnk 2011-07-05 18:11:04 82 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/Expressiontestfile.gct 2011-07-05 18:11:04 4044 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/Expressiontestfile_comments.gct 2011-07-05 18:11:04 4288 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/Expressiontestfile_gseagct.gct 2011-07-05 18:11:04 4110 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/Genesetstestfile.gmt 2011-07-05 18:11:04 1073 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/HypergeometricTest_pvalues.csv 2011-07-05 18:11:04 12313 EnrichmentMapPlugin_v1.2/src/org/baderlab/csplugins/enrichmentmap/test/resources/generic_enr_5col.txt 2011-07-05 18:11:04 217 EnrichmentMapPlugin_v1.2/src/org/mskcc/colorgradient/ColorGradientMapper.java 2011-07-05 18:11:04 8673 EnrichmentMapPlugin_v1.2/src/org/mskcc/colorgradient/ColorGradientRange.java 2011-07-05 18:11:04 4550 EnrichmentMapPlugin_v1.2/src/org/mskcc/colorgradient/ColorGradientTheme.java 2011-07-05 18:11:04 7033 EnrichmentMapPlugin_v1.2/src/org/mskcc/colorgradient/ColorGradientWidget.java 2011-07-05 18:11:04 24545 EnrichmentMapPlugin_v1.2/src/prefuse/data/query/NumberRangeModel.java 2011-07-05 18:11:04 10522 EnrichmentMapPlugin_v1.2/src/prefuse/util/TypeLib.java 2011-07-05 18:11:04 8475 EnrichmentMapPlugin_v1.2/src/prefuse/util/ui/JRangeSlider.java 2011-07-05 18:11:04 26734 EnrichmentMapPlugin_v1.2/src/prefuse/util/ui/JRangeSliderExtended.java 2011-07-05 18:11:04 6520 EnrichmentMapPlugin_v1.2/src/prefuse/util/ui/ValuedRangeModel.java 2011-07-05 18:11:04 2780
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