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- Software/EnrichmentMap . . . 28 matches
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## page was renamed from Software/EnrichmentMaps
## IMPORTANT EDITING NOTE (by Daniele Merico, 12/10/2010)
## - links to this page and its subsection have been included in a book...
- Software/EnrichmentMap/Tutorial_originalgseatutorial_outofdate . . . 10 matches
- ...
{{attachment:Software/EnrichmentMap/UserManual/enrichmentmap_logo3.png|Enrichment Map Logo|align="right"}}<<BR>>
= Enrichment Map Tutorial =
== Outline ==
This quick tutorial w...
- Software/EnrichmentMap/Description . . . 9 matches
- ...
{{attachment:Software/EnrichmentMap/UserManual/enrichmentmap_logo3.png|Enrichment Map Logo|align="right"}}<<BR>>
= The Enrichment Map Plugin =
== Concept ==
Enrichment analysis (...
- Software/EnrichmentMap/CollapseExpressionMatrix . . . 6 matches
- ...t (RNK format) to perform a "preRanked GSEA" that you later on want to analyze with [[Software/EnrichmentMap|EnrichmentMap]] and want to see an expression heatmap for the genesets,...
- Software . . . 23 matches
- ...and analyze.'''
<<TableOfContents>>
= Biological Network Analysis and Visualization Software =
== Cytoscape ==
Cytoscape is a bioinformatics software platform for visualizing mol...
- CSCPathwayAnalysisService/Tutorials . . . 10 matches
- ...alysis (GSEA)]] [[http://www.ncbi.nlm.nih.gov/pubmed/21085593|Enrichment Map]]
* [[ Software/EnrichmentMap/Description | EnrichmentMap Description ]]
*Metabolic adaptation to ch...
- RuthIsserlin . . . 4 matches
- ...nd Interactions]]
1. [[UpToDateGeneSets| Automatically updated Gene sets]]
1. [[Software/EnrichmentMap|Enrichment Map]]
1. [[PathwayAnalysis| Pathway Analysis ]]
Curre...
- GSoC2010_OriginalDescription . . . 2 matches
- ...more details on the lab research areas, and at our home-pages for our own research interests. [[Software/EnrichmentMap|Here]] is also a Cytoscape plugin we have recently developed....