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This tutorial and set of examples will guide a user through the basic functioning of the Semantic Network Summary plugin using the Cytoscape session file provided. Pre-requisites - * Cytoscape >= 2.7.0 must be installed * The Semantic Network Summary plugin must be in the Cytoscape-v2.7.x/plugins folder * Download the test data Go to this page to [[GSoC2010_SoftwareDownload|download the plugin and test data]] == Instructions == === Version 0.5 or newer === 1. Open Cytoscape 2. Click on Plugins / Semantic Network Summary / Settings - this will bring up the Semantic Network Summary Input and Display panels. 3. Open the provided [[GSoC2010_SoftwareDownload|sample data file]] (File / Open / select the file GSnames_AlzheimerEM.cys) 4. On the Network tab of the Control Panel make sure to select the network titled "EM1_Enrichment Map" |
Semantic Network Summary Tutorial and Examples
Outline
This tutorial and set of examples will guide a user through the basic functioning of the Semantic Network Summary plugin using the Cytoscape session file provided.
Pre-requisites -
Cytoscape >= 2.7.0 must be installed
- The Semantic Network Summary plugin must be in the Cytoscape-v2.7.x/plugins folder
- Download the test data
Go to this page to download the plugin and test data
Instructions
Version 0.5 or newer
1. Open Cytoscape
2. Click on Plugins / Semantic Network Summary / Settings - this will bring up the Semantic Network Summary Input and Display panels.
3. Open the provided sample data file (File / Open / select the file GSnames_AlzheimerEM.cys)
4. On the Network tab of the Control Panel make sure to select the network titled "EM1_Enrichment Map"