Semantic Network Summary Tutorial and Examples
Outline
This tutorial and set of examples will guide a user through the basic functioning of the Semantic Network Summary plugin using the Cytoscape session file provided.
Pre-requisites -
Cytoscape >= 2.7.0 must be installed
- The Semantic Network Summary plugin must be in the Cytoscape-v2.7.x/plugins folder
- Download the test data
Go to this page to download the plugin and test data
Instructions
Version 0.5 or newer
1. Open Cytoscape
2. Click on Plugins / Semantic Network Summary / Settings - this will bring up the Semantic Network Summary Input and Display panels.
3. Open the provided sample data file (File / Open / select the file GSnames_AlzheimerEM.cys)
4. On the Network tab of the Control Panel make sure to select the network titled "EM1_Enrichment Map"