= Semantic Network Summary Tutorial and Examples =
== Outline ==
This tutorial and set of examples will guide a user through the basic functioning of the Semantic Network Summary plugin using the Cytoscape session file provided.

Pre-requisites -

 * Cytoscape >= 2.7.0 must be installed
 * The Semantic Network Summary plugin must be in the Cytoscape-v2.7.x/plugins folder
 * Download the test data

Go to this page to [[GSoC2010_SoftwareDownload|download the plugin and test data]]

== Instructions ==
=== Version 0.5 or newer ===
1. Open Cytoscape

2. Click on Plugins / Semantic Network Summary / Settings - this will bring up the Semantic Network Summary Input and Display panels.

3. Open the provided [[GSoC2010_SoftwareDownload|sample data file]] (File / Open / select the file GSnames_AlzheimerEM.cys)

4. On the Network tab of the Control Panel make sure to select the network titled "EM1_Enrichment Map"