= Semantic Network Summary Parameter Tutorial =
== Outline ==
This tutorial will guide a user through how to use and manipulate the parameters associated with the Semantic Network Summary plugin using the Cytoscape session file provided. See the Semantic Summary [[GSoC2010_UseExamples|Basic Tutorial]] for an introduction to using the Semantic Network Summary.

Pre-requisites -

 * Cytoscape >= 2.7.0 must be installed
 * The Semantic Network Summary plugin must be in the Cytoscape-v2.7.x/plugins folder
 * Download the test data

Go to this page to [[GSoC2010_SoftwareDownload|download the plugin and test data]]

== Instructions ==
=== Version 0.5 or newer ===
1. Open Cytoscape

2. Open the provided [[GSoC2010_SoftwareDownload|sample data file]] (File / Open / select the file AlzheimerEM.cys)

3. Be careful not to change the set of selected nodes for the network titled "EM1_Enrichment Map" as this will change the results that you will get.

'''The example network with the correct set of nodes selected:'''

''' {{attachment:Selected_Nodes.jpg}} '''