Size: 1467
Comment:
|
Size: 1688
Comment:
|
Deletions are marked like this. | Additions are marked like this. |
Line 1: | Line 1: |
= Semantic Network Summary Plugin Download Page = | ## page was renamed from GSoC2010_SoftwareDownload #acl All:read LaylaOesper:write,delete,revert = WordCloud Plugin Download Page = |
Line 3: | Line 5: |
The Semantic Network Summary is a Cytsocape plugin that generates a word tag cloud from a user-defined node selection, summarizing an attribute of choice. For instance, if selected nodes are proteins, and the string attribute "full protein name" is selected, every string will be broken down into words, which will be plotted on a panel with size proportional to their frequency. | The WordCloud Plugin is a Cytoscape plugin that generates a word tag cloud from a user-defined node selection, summarizing an attribute of choice. For instance, if selected nodes are proteins, and the string attribute "full protein name" is selected, every string will be broken down into words, which will be plotted on a panel with size proportional to their frequency. |
Line 8: | Line 10: |
Updated 9/12/2010 * [[attachment:WordCloudPlugin_v1.0beta.zip]] |
|
Line 10: | Line 16: |
* [[attachment:SemanticNetworkSummary_v0.5.zip]] | * [[attachment:SemanticNetworkSummary_v0.5.zip]] (The name of the plugin was previously SemanticNetworkSummary plugin) |
Line 15: | Line 21: |
* [[GSoC2010_UseExamples|Guided tutorial]] on the basic functioning of the Semantic Network Summary plugin. * [[GSoC2010_ParameterTutorial|Parameter tutorial]] on using all of the parameters available for the Semantic Network Summary plugin. |
* [[Software/WordCloudPlugin/BasicTutorial|Guided tutorial]] on the basic functioning of the WordCloud plugin. * [[Software/WordCloudPlugin/ParameterTutorial|Parameter tutorial]] on using all of the parameters available for the WordCloud plugin. |
WordCloud Plugin Download Page
Brief Description
The WordCloud Plugin is a Cytoscape plugin that generates a word tag cloud from a user-defined node selection, summarizing an attribute of choice. For instance, if selected nodes are proteins, and the string attribute "full protein name" is selected, every string will be broken down into words, which will be plotted on a panel with size proportional to their frequency.
It is also possible to use the plugin to cluster words that appear together in the selected nodes. For instance, if node A has name attribute "Origin Recognition Complex 1" and node B has name attribute "Origin Recognition Complex 2", then the words "Origin", "Recognition" and "Complex" will be clustered together, following the order in which they appear. The plugin operates on any network and on any selected attributes, although it has been specifically designed for string attributes such as gene names or gene ontology annotations.
Plugin Download
Updated 9/12/2010
Updated 7/20/2010
SemanticNetworkSummary_v0.5.zip (The name of the plugin was previously SemanticNetworkSummary plugin)
Sample Data Download
Guided tutorial on the basic functioning of the WordCloud plugin.
Parameter tutorial on using all of the parameters available for the WordCloud plugin.