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=== - Web and database technologies (R) === || '''Technology/Tool''' |||| '''Description''' |||| '''URl''' |||| '''Reference''' || || HTML5 |||| For webpage structure |||| [[http://www.w3schools.com/html/default.asp|Link]] |||| -- || || CSS3 |||| For webpage layout |||| [[http://www.w3schools.com/css/default.asp|Link]] |||| -- || || JavaScript |||| For webpage interactivity |||| [[http://www.w3schools.com/js/default.asp|Link]] |||| -- || || JQuery |||| JS library for client-side scripting |||| [[http://www.w3schools.com/jquery/default.asp|Link]] |||| -- || || Shiny |||| Web application framework for R |||| [[http://shiny.rstudio.com/|Link]] |||| -- || || Django |||| Web application framework for Python |||| [[https://www.djangoproject.com/|Link]] |||| -- || || Node.JS |||| JS library for building scalable network applications |||| [[https://nodejs.org/en/|Link]] |||| -- || || MySQL |||| Relational database server |||| [[https://www.mysql.com/|Link]] |||| -- || || MongoDB |||| NoSQL database server |||| [[https://www.mongodb.org/|Link]] |||| -- || || Apache |||| Web server |||| [[https://httpd.apache.org/|Link]] |||| -- || || Apache Lucene |||| Index for free text documents |||| [[https://lucene.apache.org/core/|Link]] |||| -- || || Color Brewer |||| Color palettes library |||| [[http://colorbrewer2.org|Link]] |||| -- || |
Ten Simple Rules for Developing Public Biological Databases
Supplementary Webpage for Tools and Technologies Recommendations
R: Recommendation, E: Example
- Resources for available databases (R)
Resource |
Description |
URl |
Reference |
|||
NAR 2016's Database Collection |
NAR collection of online Molecular Biology Database 2016 |
|||||
Pathguide |
The Pathway Resource List |
|||||
The Registry |
Collection of analytical tools and data services for bioinformatics |
|||||
The Bioinformatics Links Directory |
List of curated links to molecular resources, tools and databases |
|||||
OMICtools |
Collection of classified omic tools |
|||||
A user-contributed database of biological databases |
- Ontologies and semantics (R)
- File formats (E)
Format |
Description |
URl |
Reference |
|||
FASTA |
File format for representing biological sequences |
|||||
GFF3 |
File format for representing gene annotations |
-- |
||||
Pathway exchange language for Biological pathway data |
||||||
Extended Newick |
Standard for representation of phylogenetic networks |
- Biological libraries of programming languages (E)
Library |
Description |
URl |
Reference |
|||
Open source project for Java tools for bioinformatics |
||||||
Collection of Perl modules for bioinformatics applications |
||||||
Open source collection of Python tools for bioinformatics |
||||||
BioJS |
Full-featured biological workbench written in JS |
|||||
R Bioconductor |
Collection of R packages provides tools for the analysis biological data |
- Web and database technologies (R)
Technology/Tool |
Description |
URl |
Reference |
|||
HTML5 |
For webpage structure |
-- |
||||
CSS3 |
For webpage layout |
-- |
||||
For webpage interactivity |
-- |
|||||
JQuery |
JS library for client-side scripting |
-- |
||||
Shiny |
Web application framework for R |
-- |
||||
Django |
Web application framework for Python |
-- |
||||
Node.JS |
JS library for building scalable network applications |
-- |
||||
MySQL |
Relational database server |
-- |
||||
MongoDB |
NoSQL database server |
-- |
||||
Apache |
Web server |
-- |
||||
Apache Lucene |
Index for free text documents |
-- |
||||
Color Brewer |
Color palettes library |
-- |