Dataset | expression_12hrs.Phenotype.cls #treated_versus_cont.Phenotype.cls #treated_versus_cont_repos |
Phenotype | Phenotype.cls#treated_versus_cont_repos |
Upregulated in class | treated |
GeneSet | KEGG|HSA03040 |
Enrichment Score (ES) | 0.7646419 |
Normalized Enrichment Score (NES) | 1.7812688 |
Nominal p-value | 0.0 |
FDR q-value | 0.0014946968 |
FWER p-Value | 0.0050 |
PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|---|
1 | 3312 | HSPA8 (heat shock 70kDa protein 8) | 2 | 503.357 | 0.1005 | Yes | ||
2 | 6432 | "SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)" | 38 | 213.976 | 0.1415 | Yes | ||
3 | 6635 | SNRPE (small nuclear ribonucleoprotein polypeptide E) | 43 | 207.433 | 0.1828 | Yes | ||
4 | 6434 | "SFRS10 (splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila))" | 63 | 174.651 | 0.2168 | Yes | ||
5 | 6627 | SNRPA1 (small nuclear ribonucleoprotein polypeptide A') | 87 | 156.383 | 0.2469 | Yes | ||
6 | 6636 | SNRPF (small nuclear ribonucleoprotein polypeptide F) | 93 | 154.388 | 0.2775 | Yes | ||
7 | 6426 | "SFRS1 (splicing factor, arginine/serine-rich 1)" | 119 | 133.017 | 0.3028 | Yes | ||
8 | 3303 | HSPA1A (heat shock 70kDa protein 1A) | 131 | 125.624 | 0.3274 | Yes | ||
9 | 10189 | THOC4 (THO complex 4) | 158 | 117.078 | 0.3495 | Yes | ||
10 | 4809 | NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)) | 162 | 113.700 | 0.3721 | Yes | ||
11 | 6634 | SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa) | 196 | 103.434 | 0.3911 | Yes | ||
12 | 9939 | RBM8A (RNA binding motif protein 8A) | 201 | 102.613 | 0.4114 | Yes | ||
13 | 6427 | "SFRS2 (splicing factor, arginine/serine-rich 2)" | 273 | 90.107 | 0.4259 | Yes | ||
14 | 10907 | TXNL4A (thioredoxin-like 4A) | 283 | 88.484 | 0.4432 | Yes | ||
15 | 10286 | BCAS2 (breast carcinoma amplified sequence 2) | 292 | 86.878 | 0.4601 | Yes | ||
16 | 6428 | "SFRS3 (splicing factor, arginine/serine-rich 3)" | 302 | 85.664 | 0.4768 | Yes | ||
17 | 23658 | "LSM5 (LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 340 | 80.558 | 0.4911 | Yes | ||
18 | 10915 | TCERG1 (transcription elongation regulator 1) | 351 | 78.909 | 0.5064 | Yes | ||
19 | 6632 | SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa) | 352 | 78.903 | 0.5221 | Yes | ||
20 | 6629 | SNRPB2 (small nuclear ribonucleoprotein polypeptide B'') | 421 | 69.844 | 0.5327 | Yes | ||
21 | 3192 | HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A)) | 450 | 66.400 | 0.5446 | Yes | ||
22 | 27339 | PRPF19 (PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)) | 495 | 62.370 | 0.5549 | Yes | ||
23 | 7307 | U2AF1 (U2 small nuclear RNA auxiliary factor 1) | 509 | 61.555 | 0.5666 | Yes | ||
24 | 51645 | PPIL1 (peptidylprolyl isomerase (cyclophilin)-like 1) | 510 | 61.515 | 0.5789 | Yes | ||
25 | 10772 | FUSIP1 (FUS interacting protein (serine/arginine-rich) 1) | 511 | 61.419 | 0.5911 | Yes | ||
26 | 6633 | SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa) | 528 | 60.471 | 0.6024 | Yes | ||
27 | 9128 | PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast)) | 558 | 58.180 | 0.6126 | Yes | ||
28 | 27258 | "LSM3 (LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 561 | 57.875 | 0.6241 | Yes | ||
29 | 51690 | "LSM7 (LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 569 | 57.470 | 0.6352 | Yes | ||
30 | 83443 | "SF3B5 (splicing factor 3b, subunit 5, 10kDa)" | 605 | 54.853 | 0.6445 | Yes | ||
31 | 84844 | PHF5A (PHD finger protein 5A) | 616 | 54.060 | 0.6548 | Yes | ||
32 | 6628 | SNRPB (small nuclear ribonucleoprotein polypeptides B and B1) | 697 | 49.717 | 0.6607 | Yes | ||
33 | 23450 | "SF3B3 (splicing factor 3b, subunit 3, 130kDa)" | 711 | 48.605 | 0.6698 | Yes | ||
34 | 8896 | BUD31 (BUD31 homolog (S. cerevisiae)) | 793 | 45.180 | 0.6748 | Yes | ||
35 | 55660 | PRPF40A (PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae)) | 809 | 44.410 | 0.6830 | Yes | ||
36 | 9775 | "EIF4A3 (eukaryotic translation initiation factor 4A, isoform 3)" | 829 | 43.500 | 0.6907 | Yes | ||
37 | 4686 | "NCBP1 (nuclear cap binding protein subunit 1, 80kDa)" | 860 | 42.266 | 0.6977 | Yes | ||
38 | 10262 | "SF3B4 (splicing factor 3b, subunit 4, 49kDa)" | 882 | 41.258 | 0.7049 | Yes | ||
39 | 6626 | SNRPA (small nuclear ribonucleoprotein polypeptide A) | 920 | 40.041 | 0.7111 | Yes | ||
40 | 11157 | "LSM6 (LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 975 | 37.783 | 0.7159 | Yes | ||
41 | 22916 | "NCBP2 (nuclear cap binding protein subunit 2, 20kDa)" | 986 | 37.528 | 0.7229 | Yes | ||
42 | 4116 | "MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))" | 1009 | 36.619 | 0.7292 | Yes | ||
43 | 29896 | TRA2A (transformer-2 alpha) | 1092 | 33.995 | 0.7319 | Yes | ||
44 | 51729 | WBP11 (WW domain binding protein 11) | 1097 | 33.831 | 0.7385 | Yes | ||
45 | 11338 | U2AF2 (U2 small nuclear RNA auxiliary factor 2) | 1112 | 33.372 | 0.7445 | Yes | ||
46 | 27316 | "RBMX (RNA binding motif protein, X-linked)" | 1142 | 32.605 | 0.7495 | Yes | ||
47 | 9879 | DDX46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46) | 1201 | 31.146 | 0.7529 | Yes | ||
48 | 10084 | PQBP1 (polyglutamine binding protein 1) | 1346 | 27.861 | 0.7513 | Yes | ||
49 | 10465 | PPIH (peptidylprolyl isomerase H (cyclophilin H)) | 1364 | 27.584 | 0.7560 | Yes | ||
50 | 58517 | RBM25 (RNA binding motif protein 25) | 1426 | 26.594 | 0.7583 | Yes | ||
51 | 10523 | CHERP (calcium homeostasis endoplasmic reticulum protein) | 1523 | 24.987 | 0.7585 | Yes | ||
52 | 11325 | DDX42 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 42) | 1685 | 22.612 | 0.7551 | Yes | ||
53 | 3304 | HSPA1B (heat shock 70kDa protein 1B) | 1849 | 20.500 | 0.7511 | Yes | ||
54 | 6631 | SNRPC (small nuclear ribonucleoprotein polypeptide C) | 1871 | 20.240 | 0.7541 | Yes | ||
55 | 6429 | "SFRS4 (splicing factor, arginine/serine-rich 4)" | 1970 | 19.104 | 0.7531 | Yes | ||
56 | 55119 | PRPF38B (PRP38 pre-mRNA processing factor 38 (yeast) domain containing B) | 2011 | 18.685 | 0.7548 | Yes | ||
57 | 51362 | CDC40 (cell division cycle 40 homolog (S. cerevisiae)) | 2098 | 17.942 | 0.7542 | Yes | ||
58 | 6431 | "SFRS6 (splicing factor, arginine/serine-rich 6)" | 2113 | 17.800 | 0.7570 | Yes | ||
59 | 6625 | SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen)) | 2159 | 17.443 | 0.7583 | Yes | ||
60 | 10285 | SMNDC1 (survival motor neuron domain containing 1) | 2210 | 17.043 | 0.7592 | Yes | ||
61 | 55110 | MAGOHB (mago-nashi homolog B (Drosophila)) | 2213 | 17.013 | 0.7625 | Yes | ||
62 | 5356 | "PLRG1 (pleiotropic regulator 1 (PRL1 homolog, Arabidopsis))" | 2239 | 16.759 | 0.7646 | Yes | ||
63 | 9410 | WDR57 (WD repeat domain 57 (U5 snRNP specific)) | 2434 | 14.849 | 0.7580 | No | ||
64 | 5093 | PCBP1 (poly(rC) binding protein 1) | 2606 | 13.429 | 0.7522 | No | ||
65 | 9416 | DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23) | 2653 | 13.087 | 0.7526 | No | ||
66 | 10946 | "SF3A3 (splicing factor 3a, subunit 3, 60kDa)" | 2906 | 11.623 | 0.7424 | No | ||
67 | 57187 | THOC2 (THO complex 2) | 3035 | 10.817 | 0.7382 | No | ||
68 | 22827 | PUF60 (poly-U binding splicing factor 60KDa) | 3078 | 10.572 | 0.7383 | No | ||
69 | 9984 | THOC1 (THO complex 1) | 3123 | 10.355 | 0.7382 | No | ||
70 | 57819 | "LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 3136 | 10.251 | 0.7396 | No | ||
71 | 84991 | RBM17 (RNA binding motif protein 17) | 3320 | 9.468 | 0.7325 | No | ||
72 | 10450 | PPIE (peptidylprolyl isomerase E (cyclophilin E)) | 3425 | 9.067 | 0.7291 | No | ||
73 | 10291 | "SF3A1 (splicing factor 3a, subunit 1, 120kDa)" | 3597 | 8.360 | 0.7223 | No | ||
74 | 9343 | EFTUD2 (elongation factor Tu GTP binding domain containing 2) | 3617 | 8.280 | 0.7230 | No | ||
75 | 9716 | AQR (aquarius homolog (mouse)) | 3722 | 7.860 | 0.7195 | No | ||
76 | 153527 | "ZMAT2 (zinc finger, matrin type 2)" | 3749 | 7.703 | 0.7197 | No | ||
77 | 11017 | RY1 (putative nucleic acid binding protein RY-1) | 3819 | 7.434 | 0.7178 | No | ||
78 | 23350 | SR140 (U2-associated SR140 protein) | 3887 | 7.132 | 0.7159 | No | ||
79 | 9129 | PRPF3 (PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae)) | 3911 | 7.055 | 0.7162 | No | ||
80 | 56259 | "CTNNBL1 (catenin, beta like 1)" | 4159 | 6.228 | 0.7052 | No | ||
81 | 57461 | ISY1 (ISY1 splicing factor homolog (S. cerevisiae)) | 4385 | 5.505 | 0.6952 | No | ||
82 | 9092 | SART1 (squamous cell carcinoma antigen recognized by T cells) | 4707 | 4.703 | 0.6802 | No | ||
83 | 988 | CDC5L (CDC5 cell division cycle 5-like (S. pombe)) | 4915 | 4.204 | 0.6708 | No | ||
84 | 55696 | RBM22 (RNA binding motif protein 22) | 5037 | 3.949 | 0.6656 | No | ||
85 | 22938 | SNW1 (SNW domain containing 1) | 5077 | 3.881 | 0.6644 | No | ||
86 | 84950 | PRPF38A (PRP38 pre-mRNA processing factor 38 (yeast) domain containing A) | 6245 | 2.071 | 0.6071 | No | ||
87 | 652147 | "LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)" | 6532 | 1.750 | 0.5933 | No | ||
88 | 25804 | "LSM4 (LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 6964 | 1.368 | 0.5722 | No | ||
89 | 3310 | HSPA6 (heat shock 70kDa protein 6 (HSP70B')) | 7375 | 1.082 | 0.5521 | No | ||
90 | 10569 | SLU7 (SLU7 splicing factor homolog (S. cerevisiae)) | 7424 | 1.051 | 0.5500 | No | ||
91 | 10713 | USP39 (ubiquitin specific peptidase 39) | 7809 | 0.832 | 0.5311 | No | ||
92 | 3306 | HSPA2 (heat shock 70kDa protein 2) | 8614 | 0.507 | 0.4914 | No | ||
93 | 8559 | PRPF18 (PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae)) | 8806 | 0.442 | 0.4821 | No | ||
94 | 144983 | RP11-78J21.1 (heterogeneous nuclear ribonucleoprotein A1-like) | 10311 | 0.061 | 0.4076 | No | ||
95 | 9785 | DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38) | 14908 | -1.491 | 0.1805 | No | ||
96 | 56949 | XAB2 (XPA binding protein 2) | 15293 | -1.787 | 0.1618 | No | ||
97 | 8175 | "SF3A2 (splicing factor 3a, subunit 2, 66kDa)" | 15425 | -1.893 | 0.1557 | No | ||
98 | 3305 | HSPA1L (heat shock 70kDa protein 1-like) | 15654 | -2.102 | 0.1448 | No | ||
99 | 8449 | DHX16 (DEAH (Asp-Glu-Ala-His) box polypeptide 16) | 15715 | -2.167 | 0.1423 | No | ||
100 | 23451 | "SF3B1 (splicing factor 3b, subunit 1, 155kDa)" | 15886 | -2.348 | 0.1344 | No | ||
101 | 51691 | "LSM8 (LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae))" | 15943 | -2.425 | 0.1321 | No | ||
102 | 151903 | CCDC12 (coiled-coil domain containing 12) | 16093 | -2.631 | 0.1252 | No | ||
103 | 25766 | PRPF40B (PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)) | 16574 | -3.343 | 0.1021 | No | ||
104 | 26121 | PRPF31 (PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae)) | 16741 | -3.692 | 0.0946 | No | ||
105 | 1659 | DHX8 (DEAH (Asp-Glu-Ala-His) box polypeptide 8) | 17140 | -4.610 | 0.0759 | No | ||
106 | 10594 | PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae)) | 17881 | -7.246 | 0.0407 | No | ||
107 | 4670 | HNRNPM (heterogeneous nuclear ribonucleoprotein M) | 17936 | -7.587 | 0.0395 | No | ||
108 | 3178 | HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1) | 18139 | -8.691 | 0.0313 | No | ||
109 | 22985 | ACIN1 (apoptotic chromatin condensation inducer 1) | 18267 | -9.380 | 0.0269 | No | ||
110 | 3190 | HNRNPK (heterogeneous nuclear ribonucleoprotein K) | 18557 | -11.620 | 0.0149 | No | ||
111 | 24148 | PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae)) | 18644 | -12.510 | 0.0131 | No | ||
112 | 25949 | "SYF2 (SYF2 homolog, RNA splicing factor (S. cerevisiae))" | 18657 | -12.624 | 0.0150 | No | ||
113 | 51340 | CRNKL1 (crooked neck pre-mRNA splicing factor-like 1 (Drosophila)) | 18946 | -16.005 | 0.0040 | No | ||
114 | 8683 | "SFRS9 (splicing factor, arginine/serine-rich 9)" | 18964 | -16.250 | 0.0064 | No | ||
115 | 10992 | "SF3B2 (splicing factor 3b, subunit 2, 145kDa)" | 19037 | -17.576 | 0.0063 | No | ||
116 | 1655 | DDX5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5) | 19052 | -17.892 | 0.0092 | No | ||
117 | 6637 | SNRPG (small nuclear ribonucleoprotein polypeptide G) | 19107 | -18.986 | 0.0104 | No | ||
118 | 7919 | BAT1 (HLA-B associated transcript 1) | 19345 | -24.118 | 0.0034 | No | ||
119 | 23020 | ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1) | 19614 | -32.261 | -0.0034 | No | ||
120 | 220988 | HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3) | 19789 | -41.609 | -0.0037 | No | ||
121 | 3183 | HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2)) | 19797 | -42.022 | 0.0044 | No | ||
122 | 6430 | "SFRS5 (splicing factor, arginine/serine-rich 5)" | 19923 | -53.636 | 0.0089 | No | ||
123 | 1665 | DHX15 (DEAH (Asp-Glu-Ala-His) box polypeptide 15) | 19932 | -54.709 | 0.0195 | No |