Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classtreated
GeneSetKEGG|HSA03040
Enrichment Score (ES)0.7646419
Normalized Enrichment Score (NES)1.7812688
Nominal p-value0.0
FDR q-value0.0014946968
FWER p-Value0.0050
Table: GSEA Results Summary



Fig 1: Enrichment plot: KEGG|HSA03040   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
13312HSPA8 (heat shock 70kDa protein 8)2503.3570.1005Yes
26432"SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)"38213.9760.1415Yes
36635SNRPE (small nuclear ribonucleoprotein polypeptide E)43207.4330.1828Yes
46434"SFRS10 (splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila))"63174.6510.2168Yes
56627SNRPA1 (small nuclear ribonucleoprotein polypeptide A')87156.3830.2469Yes
66636SNRPF (small nuclear ribonucleoprotein polypeptide F)93154.3880.2775Yes
76426"SFRS1 (splicing factor, arginine/serine-rich 1)"119133.0170.3028Yes
83303HSPA1A (heat shock 70kDa protein 1A)131125.6240.3274Yes
910189THOC4 (THO complex 4)158117.0780.3495Yes
104809NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae))162113.7000.3721Yes
116634SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa)196103.4340.3911Yes
129939RBM8A (RNA binding motif protein 8A)201102.6130.4114Yes
136427"SFRS2 (splicing factor, arginine/serine-rich 2)"27390.1070.4259Yes
1410907TXNL4A (thioredoxin-like 4A)28388.4840.4432Yes
1510286BCAS2 (breast carcinoma amplified sequence 2)29286.8780.4601Yes
166428"SFRS3 (splicing factor, arginine/serine-rich 3)"30285.6640.4768Yes
1723658"LSM5 (LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae))"34080.5580.4911Yes
1810915TCERG1 (transcription elongation regulator 1)35178.9090.5064Yes
196632SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa)35278.9030.5221Yes
206629SNRPB2 (small nuclear ribonucleoprotein polypeptide B'')42169.8440.5327Yes
213192HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A))45066.4000.5446Yes
2227339PRPF19 (PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae))49562.3700.5549Yes
237307U2AF1 (U2 small nuclear RNA auxiliary factor 1)50961.5550.5666Yes
2451645PPIL1 (peptidylprolyl isomerase (cyclophilin)-like 1)51061.5150.5789Yes
2510772FUSIP1 (FUS interacting protein (serine/arginine-rich) 1)51161.4190.5911Yes
266633SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)52860.4710.6024Yes
279128PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast))55858.1800.6126Yes
2827258"LSM3 (LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae))"56157.8750.6241Yes
2951690"LSM7 (LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae))"56957.4700.6352Yes
3083443"SF3B5 (splicing factor 3b, subunit 5, 10kDa)"60554.8530.6445Yes
3184844PHF5A (PHD finger protein 5A)61654.0600.6548Yes
326628SNRPB (small nuclear ribonucleoprotein polypeptides B and B1)69749.7170.6607Yes
3323450"SF3B3 (splicing factor 3b, subunit 3, 130kDa)"71148.6050.6698Yes
348896BUD31 (BUD31 homolog (S. cerevisiae))79345.1800.6748Yes
3555660PRPF40A (PRP40 pre-mRNA processing factor 40 homolog A (S. cerevisiae))80944.4100.6830Yes
369775"EIF4A3 (eukaryotic translation initiation factor 4A, isoform 3)"82943.5000.6907Yes
374686"NCBP1 (nuclear cap binding protein subunit 1, 80kDa)"86042.2660.6977Yes
3810262"SF3B4 (splicing factor 3b, subunit 4, 49kDa)"88241.2580.7049Yes
396626SNRPA (small nuclear ribonucleoprotein polypeptide A)92040.0410.7111Yes
4011157"LSM6 (LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae))"97537.7830.7159Yes
4122916"NCBP2 (nuclear cap binding protein subunit 2, 20kDa)"98637.5280.7229Yes
424116"MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))"100936.6190.7292Yes
4329896TRA2A (transformer-2 alpha)109233.9950.7319Yes
4451729WBP11 (WW domain binding protein 11)109733.8310.7385Yes
4511338U2AF2 (U2 small nuclear RNA auxiliary factor 2)111233.3720.7445Yes
4627316"RBMX (RNA binding motif protein, X-linked)"114232.6050.7495Yes
479879DDX46 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 46)120131.1460.7529Yes
4810084PQBP1 (polyglutamine binding protein 1)134627.8610.7513Yes
4910465PPIH (peptidylprolyl isomerase H (cyclophilin H))136427.5840.7560Yes
5058517RBM25 (RNA binding motif protein 25)142626.5940.7583Yes
5110523CHERP (calcium homeostasis endoplasmic reticulum protein)152324.9870.7585Yes
5211325DDX42 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 42)168522.6120.7551Yes
533304HSPA1B (heat shock 70kDa protein 1B)184920.5000.7511Yes
546631SNRPC (small nuclear ribonucleoprotein polypeptide C)187120.2400.7541Yes
556429"SFRS4 (splicing factor, arginine/serine-rich 4)"197019.1040.7531Yes
5655119PRPF38B (PRP38 pre-mRNA processing factor 38 (yeast) domain containing B)201118.6850.7548Yes
5751362CDC40 (cell division cycle 40 homolog (S. cerevisiae))209817.9420.7542Yes
586431"SFRS6 (splicing factor, arginine/serine-rich 6)"211317.8000.7570Yes
596625SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen))215917.4430.7583Yes
6010285SMNDC1 (survival motor neuron domain containing 1)221017.0430.7592Yes
6155110MAGOHB (mago-nashi homolog B (Drosophila))221317.0130.7625Yes
625356"PLRG1 (pleiotropic regulator 1 (PRL1 homolog, Arabidopsis))"223916.7590.7646Yes
639410WDR57 (WD repeat domain 57 (U5 snRNP specific))243414.8490.7580No
645093PCBP1 (poly(rC) binding protein 1)260613.4290.7522No
659416DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)265313.0870.7526No
6610946"SF3A3 (splicing factor 3a, subunit 3, 60kDa)"290611.6230.7424No
6757187THOC2 (THO complex 2)303510.8170.7382No
6822827PUF60 (poly-U binding splicing factor 60KDa)307810.5720.7383No
699984THOC1 (THO complex 1)312310.3550.7382No
7057819"LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))"313610.2510.7396No
7184991RBM17 (RNA binding motif protein 17)33209.4680.7325No
7210450PPIE (peptidylprolyl isomerase E (cyclophilin E))34259.0670.7291No
7310291"SF3A1 (splicing factor 3a, subunit 1, 120kDa)"35978.3600.7223No
749343EFTUD2 (elongation factor Tu GTP binding domain containing 2)36178.2800.7230No
759716AQR (aquarius homolog (mouse))37227.8600.7195No
76153527"ZMAT2 (zinc finger, matrin type 2)"37497.7030.7197No
7711017RY1 (putative nucleic acid binding protein RY-1)38197.4340.7178No
7823350SR140 (U2-associated SR140 protein)38877.1320.7159No
799129PRPF3 (PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae))39117.0550.7162No
8056259"CTNNBL1 (catenin, beta like 1)"41596.2280.7052No
8157461ISY1 (ISY1 splicing factor homolog (S. cerevisiae))43855.5050.6952No
829092SART1 (squamous cell carcinoma antigen recognized by T cells)47074.7030.6802No
83988CDC5L (CDC5 cell division cycle 5-like (S. pombe))49154.2040.6708No
8455696RBM22 (RNA binding motif protein 22)50373.9490.6656No
8522938SNW1 (SNW domain containing 1)50773.8810.6644No
8684950PRPF38A (PRP38 pre-mRNA processing factor 38 (yeast) domain containing A)62452.0710.6071No
87652147"LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)"65321.7500.5933No
8825804"LSM4 (LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae))"69641.3680.5722No
893310HSPA6 (heat shock 70kDa protein 6 (HSP70B'))73751.0820.5521No
9010569SLU7 (SLU7 splicing factor homolog (S. cerevisiae))74241.0510.5500No
9110713USP39 (ubiquitin specific peptidase 39)78090.8320.5311No
923306HSPA2 (heat shock 70kDa protein 2)86140.5070.4914No
938559PRPF18 (PRP18 pre-mRNA processing factor 18 homolog (S. cerevisiae))88060.4420.4821No
94144983RP11-78J21.1 (heterogeneous nuclear ribonucleoprotein A1-like)103110.0610.4076No
959785DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)14908-1.4910.1805No
9656949XAB2 (XPA binding protein 2)15293-1.7870.1618No
978175"SF3A2 (splicing factor 3a, subunit 2, 66kDa)"15425-1.8930.1557No
983305HSPA1L (heat shock 70kDa protein 1-like)15654-2.1020.1448No
998449DHX16 (DEAH (Asp-Glu-Ala-His) box polypeptide 16)15715-2.1670.1423No
10023451"SF3B1 (splicing factor 3b, subunit 1, 155kDa)"15886-2.3480.1344No
10151691"LSM8 (LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae))"15943-2.4250.1321No
102151903CCDC12 (coiled-coil domain containing 12)16093-2.6310.1252No
10325766PRPF40B (PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae))16574-3.3430.1021No
10426121PRPF31 (PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae))16741-3.6920.0946No
1051659DHX8 (DEAH (Asp-Glu-Ala-His) box polypeptide 8)17140-4.6100.0759No
10610594PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae))17881-7.2460.0407No
1074670HNRNPM (heterogeneous nuclear ribonucleoprotein M)17936-7.5870.0395No
1083178HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1)18139-8.6910.0313No
10922985ACIN1 (apoptotic chromatin condensation inducer 1)18267-9.3800.0269No
1103190HNRNPK (heterogeneous nuclear ribonucleoprotein K)18557-11.6200.0149No
11124148PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae))18644-12.5100.0131No
11225949"SYF2 (SYF2 homolog, RNA splicing factor (S. cerevisiae))"18657-12.6240.0150No
11351340CRNKL1 (crooked neck pre-mRNA splicing factor-like 1 (Drosophila))18946-16.0050.0040No
1148683"SFRS9 (splicing factor, arginine/serine-rich 9)"18964-16.2500.0064No
11510992"SF3B2 (splicing factor 3b, subunit 2, 145kDa)"19037-17.5760.0063No
1161655DDX5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5)19052-17.8920.0092No
1176637SNRPG (small nuclear ribonucleoprotein polypeptide G)19107-18.9860.0104No
1187919BAT1 (HLA-B associated transcript 1)19345-24.1180.0034No
11923020ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1)19614-32.261-0.0034No
120220988HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)19789-41.609-0.0037No
1213183HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2))19797-42.0220.0044No
1226430"SFRS5 (splicing factor, arginine/serine-rich 5)"19923-53.6360.0089No
1231665DHX15 (DEAH (Asp-Glu-Ala-His) box polypeptide 15)19932-54.7090.0195No
Table: GSEA details [plain text format]



Fig 2: KEGG|HSA03040   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: KEGG|HSA03040: Random ES distribution   
Gene set null distribution of ES for KEGG|HSA03040