Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classtreated
GeneSetREACTOME|REACT_2039.1
Enrichment Score (ES)0.7319737
Normalized Enrichment Score (NES)1.7835656
Nominal p-value0.0
FDR q-value0.0022420452
FWER p-Value0.0050
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME|REACT_2039.1   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
16432"SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)"38213.9760.0330Yes
26635SNRPE (small nuclear ribonucleoprotein polypeptide E)43207.4330.0666Yes
34904YBX1 (Y box binding protein 1)52184.1770.0962Yes
46627SNRPA1 (small nuclear ribonucleoprotein polypeptide A')87156.3830.1200Yes
53187HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1 (H))89155.6030.1453Yes
66636SNRPF (small nuclear ribonucleoprotein polypeptide F)93154.3880.1703Yes
73184"HNRNPD (heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa))"114136.8580.1916Yes
86426"SFRS1 (splicing factor, arginine/serine-rich 1)"119133.0170.2131Yes
910189THOC4 (THO complex 4)158117.0780.2303Yes
104809NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae))162113.7000.2487Yes
112521FUS (fusion (involved in t(12;16) in malignant liposarcoma))182107.3020.2652Yes
126634SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa)196103.4340.2814Yes
139939RBM8A (RNA binding motif protein 8A)201102.6130.2979Yes
1451639"SF3B14 (splicing factor 3B, 14 kDa subunit)"23296.6860.3122Yes
155431"POLR2B (polymerase (RNA) II (DNA directed) polypeptide B, 140kDa)"24893.7050.3267Yes
166427"SFRS2 (splicing factor, arginine/serine-rich 2)"27390.1070.3402Yes
1757122NUP107 (nucleoporin 107kDa)27689.5880.3547Yes
1810907TXNL4A (thioredoxin-like 4A)28388.4840.3688Yes
196428"SFRS3 (splicing factor, arginine/serine-rich 3)"30285.6640.3819Yes
201977EIF4E (eukaryotic translation initiation factor 4E)30684.6410.3955Yes
218480RAE1 (RAE1 RNA export 1 homolog (S. pombe))32283.3120.4084Yes
222966"GTF2H2 (general transcription factor IIH, polypeptide 2, 44kDa)"33780.9800.4209Yes
236632SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa)35278.9030.4330Yes
246921"TCEB1 (transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C))"37775.3770.4441Yes
256629SNRPB2 (small nuclear ribonucleoprotein polypeptide B'')42169.8440.4534Yes
265436POLR2G (polymerase (RNA) II (DNA directed) polypeptide G)43967.7680.4636Yes
273192HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A))45066.4000.4739Yes
2811198SUPT16H (suppressor of Ty 16 homolog (S. cerevisiae))48463.4690.4826Yes
29129401NUP35 (nucleoporin 35kDa)50261.8730.4918Yes
307307U2AF1 (U2 small nuclear RNA auxiliary factor 1)50961.5550.5016Yes
316633SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)52860.4710.5105Yes
325435POLR2F (polymerase (RNA) II (DNA directed) polypeptide F)53160.3460.5203Yes
33902CCNH (cyclin H)53659.5430.5298Yes
349128PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast))55858.1800.5382Yes
3583443"SF3B5 (splicing factor 3b, subunit 5, 10kDa)"60554.8530.5449Yes
3684844PHF5A (PHD finger protein 5A)61654.0600.5532Yes
375441"POLR2L (polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa)"65551.8330.5597Yes
386628SNRPB (small nuclear ribonucleoprotein polypeptides B and B1)69749.7170.5658Yes
396923"TCEB2 (transcription elongation factor B (SIII), polypeptide 2 (18kDa, elongin B))"70748.6990.5733Yes
4023450"SF3B3 (splicing factor 3b, subunit 3, 130kDa)"71148.6050.5811Yes
411479"CSTF3 (cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa)"76746.2720.5859Yes
4279023NUP37 (nucleoporin 37kDa)77046.1890.5933Yes
4310236HNRNPR (heterogeneous nuclear ribonucleoprotein R)80344.7120.5990Yes
446882"TAF11 (TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa)"85442.4290.6034Yes
454686"NCBP1 (nuclear cap binding protein subunit 1, 80kDa)"86042.2660.6101Yes
4610262"SF3B4 (splicing factor 3b, subunit 4, 49kDa)"88241.2580.6157Yes
476626SNRPA (small nuclear ribonucleoprotein polypeptide A)92040.0410.6204Yes
489972NUP153 (nucleoporin 153kDa)92439.6720.6267Yes
497884SLBP (stem-loop binding protein)96637.9850.6309Yes
5023636NUP62 (nucleoporin 62kDa)98037.6920.6364Yes
5122916"NCBP2 (nuclear cap binding protein subunit 2, 20kDa)"98637.5280.6423Yes
524116"MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))"100936.6190.6471Yes
5356339METTL3 (methyltransferase like 3)101236.5450.6530Yes
549295"SFRS11 (splicing factor, arginine/serine-rich 11)"104235.3880.6573Yes
5584967"LSM10 (LSM10, U7 small nuclear RNA associated)"106534.7190.6619Yes
5610921"RNPS1 (RNA binding protein S1, serine-rich domain)"110733.5360.6653Yes
5711338U2AF2 (U2 small nuclear RNA auxiliary factor 2)111233.3720.6706Yes
5810762NUP50 (nucleoporin 50kDa)113232.8600.6750Yes
5927316"RBMX (RNA binding motif protein, X-linked)"114232.6050.6798Yes
6023165NUP205 (nucleoporin 205kDa)114332.6050.6851Yes
614927NUP88 (nucleoporin 88kDa)114932.4550.6902Yes
625438"POLR2I (polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa)"115732.2490.6951Yes
633185HNRNPF (heterogeneous nuclear ribonucleoprotein F)121730.7320.6972Yes
646878"TAF6 (TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa)"122330.5550.7019Yes
653188HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2 (H'))126529.7600.7047Yes
662967"GTF2H3 (general transcription factor IIH, polypeptide 3, 34kDa)"127329.6250.7092Yes
675434"POLR2E (polymerase (RNA) II (DNA directed) polypeptide E, 25kDa)"132828.2680.7111Yes
686880"TAF9 (TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa)"150125.3500.7067Yes
698243SMC1A (structural maintenance of chromosomes 1A)159723.9870.7059Yes
7053371NUP54 (nucleoporin 54kDa)160423.8590.7095Yes
716917"TCEA1 (transcription elongation factor A (SII), 1)"163523.4060.7118Yes
729631NUP155 (nucleoporin 155kDa)164123.3600.7154Yes
732957"GTF2A1 (general transcription factor IIA, 1, 19/37kDa)"167922.7080.7172Yes
745433POLR2D (polymerase (RNA) II (DNA directed) polypeptide D)174721.7110.7175Yes
756874"TAF4 (TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa)"175921.5090.7204Yes
765432"POLR2C (polymerase (RNA) II (DNA directed) polypeptide C, 33kDa)"177221.3890.7233Yes
7765109UPF3B (UPF3 regulator of nonsense transcripts homolog B (yeast))177821.3410.7265Yes
7823279NUP160 (nucleoporin 160kDa)180420.9880.7287Yes
796749SSRP1 (structure specific recognition protein 1)194319.5770.7251Yes
806429"SFRS4 (splicing factor, arginine/serine-rich 4)"197019.1040.7269Yes
812963"GTF2F2 (general transcription factor IIF, polypeptide 2, 30kDa)"205618.2640.7256Yes
8251362CDC40 (cell division cycle 40 homolog (S. cerevisiae))209817.9420.7265Yes
836431"SFRS6 (splicing factor, arginine/serine-rich 6)"211317.8000.7287Yes
846625SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen))215917.4430.7293Yes
855903RANBP2 (RAN binding protein 2)216417.3990.7320Yes
861660DHX9 (DEAH (Asp-Glu-Ala-His) box polypeptide 9)225816.5210.7300No
87905CCNT2 (cyclin T2)242914.8800.7240No
889410WDR57 (WD repeat domain 57 (U5 snRNP specific))243414.8490.7263No
895093PCBP1 (poly(rC) binding protein 1)260613.4290.7200No
9023511NUP188 (nucleoporin 188kDa)262313.2560.7213No
919416DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)265313.0870.7220No
926881"TAF10 (TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa)"268112.9630.7228No
9355749CCAR1 (cell division cycle and apoptosis regulator 1)268412.9530.7248No
949688NUP93 (nucleoporin 93kDa)270912.8140.7257No
9529894"CPSF1 (cleavage and polyadenylation specific factor 1, 160kDa)"272012.7110.7273No
962961"GTF2E2 (general transcription factor IIE, polypeptide 2, beta 34kDa)"273012.6400.7289No
9755746NUP133 (nucleoporin 133kDa)278712.2810.7281No
9810482NXF1 (nuclear RNA export factor 1)281112.1450.7289No
9910946"SF3A3 (splicing factor 3a, subunit 3, 60kDa)"290611.6230.7262No
1006877"TAF5 (TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 100kDa)"292111.5050.7273No
1016827SUPT4H1 (suppressor of Ty 4 homolog 1 (S. cerevisiae))305810.6690.7223No
1027936RDBP (RD RNA binding protein)308610.5150.7227No
10357819"LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))"313610.2510.7219No
10411051NUDT21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21)313910.2330.7235No
1056875"TAF4B (TAF4b RNA polymerase II, TATA box binding protein (TBP)-associated factor, 105kDa)"32169.8710.7214No
10679902NUP85 (nucleoporin 85kDa)32899.5860.7193No
10751692"CPSF3 (cleavage and polyadenylation specific factor 3, 73kDa)"32999.5330.7204No
1089150"CTDP1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1)"33039.5180.7218No
109348995NUP43 (nucleoporin 43kDa)33559.3500.7208No
11023225NUP210 (nucleoporin 210kDa)33969.1690.7203No
1112968"GTF2H4 (general transcription factor IIH, polypeptide 4, 52kDa)"34169.1030.7209No
11279869"FLJ12529 (pre-mRNA cleavage factor I, 59 kDa subunit)"34828.7990.7191No
11310250SRRM1 (serine/arginine repetitive matrix 1)34848.7950.7205No
1146872"TAF1 (TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa)"35108.7050.7207No
1154331"MNAT1 (menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis))"35838.4170.7185No
11610291"SF3A1 (splicing factor 3a, subunit 1, 120kDa)"35978.3600.7192No
1179343EFTUD2 (elongation factor Tu GTP binding domain containing 2)36178.2800.7196No
1185430"POLR2A (polymerase (RNA) II (DNA directed) polypeptide A, 220kDa)"36268.2310.7205No
11910914PAPOLA (poly(A) polymerase alpha)38757.1870.7094No
1203191HNRNPL (heterogeneous nuclear ribonucleoprotein L)40066.7660.7040No
121904CCNT1 (cyclin T1)40466.6530.7032No
12225888ZNF473 (zinc finger protein 473)44095.4670.6861No
1235437POLR2H (polymerase (RNA) II (DNA directed) polypeptide H)45965.0000.6777No
1246908TBP (TATA box binding protein)46904.7390.6738No
1259883POM121 (POM121 membrane glycoprotein (rat))50273.9780.6578No
1262068"ERCC2 (excision repair cross-complementing rodent repair deficiency, complementation group 2)"51593.7020.6519No
12710421CD2BP2 (CD2 (cytoplasmic tail) binding protein 2)53573.3070.6427No
1281478"CSTF2 (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa)"54943.0740.6364No
12910978"CLP1 (CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae))"57832.6370.6226No
1302071"ERCC3 (excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing))"59442.4390.6150No
131134353"LSM11 (LSM11, U7 small nuclear RNA associated)"60242.3460.6115No
1322965"GTF2H1 (general transcription factor IIH, polypeptide 1, 62kDa)"61552.1630.6054No
1337469WHSC2 (Wolf-Hirschhorn syndrome candidate 2)62782.0210.5996No
1345440"POLR2K (polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa)"63211.9700.5979No
1352962"GTF2F1 (general transcription factor IIF, polypeptide 1, 74kDa)"63881.8940.5949No
136652147"LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)"65321.7500.5881No
13757794SF4 (splicing factor 4)66911.5970.5805No
13810949HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0)79900.7410.5162No
1398106"PABPN1 (poly(A) binding protein, nuclear 1)"98660.1670.4232No
1406924"TCEB3 (transcription elongation factor B (SIII), polypeptide 3 (110kDa, elongin A))"103190.0590.4007No
1411025CDK9 (cyclin-dependent kinase 9)104180.0340.3959No
1426884"TAF13 (TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa)"13077-0.6300.2640No
1433181HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1)13361-0.7270.2501No
1448178ELL (elongation factor RNA polymerase II)14520-1.2540.1928No
1452958"GTF2A2 (general transcription factor IIA, 2, 12kDa)"14627-1.3110.1878No
1469785DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)14908-1.4910.1741No
14753981"CPSF2 (cleavage and polyadenylation specific factor 2, 100kDa)"15120-1.6540.1639No
1488175"SF3A2 (splicing factor 3a, subunit 2, 66kDa)"15425-1.8930.1491No
14923451"SF3B1 (splicing factor 3b, subunit 1, 155kDa)"15886-2.3480.1267No
1502960"GTF2E1 (general transcription factor IIE, polypeptide 1, alpha 56kDa)"16002-2.5030.1214No
1518021NUP214 (nucleoporin 214kDa)16014-2.5130.1212No
1528732RNGTT (RNA guanylyltransferase and 5'-phosphatase)16653-3.4990.0901No
1538731RNMT (RNA (guanine-7-) methyltransferase)16887-3.9670.0792No
1548086"AAAS (achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A))"16985-4.2110.0751No
1556883"TAF12 (TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 20kDa)"17252-4.8580.0627No
15611100HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U-like 1)17403-5.3000.0561No
1577175TPR (translocated promoter region (to activated MET oncogene))17416-5.3360.0564No
15810181RBM5 (RNA binding motif protein 5)17795-6.8970.0387No
15910594PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae))17881-7.2460.0357No
1604670HNRNPM (heterogeneous nuclear ribonucleoprotein M)17936-7.5870.0342No
1611477"CSTF1 (cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa)"18059-8.1900.0295No
1625439"POLR2J (polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa)"18134-8.6610.0273No
1633178HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1)18139-8.6910.0285No
16411097NUPL2 (nucleoporin like 2)18164-8.8500.0287No
1652959GTF2B (general transcription factor IIB)18273-9.4290.0249No
1663190HNRNPK (heterogeneous nuclear ribonucleoprotein K)18557-11.6200.0127No
16724148PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae))18644-12.5100.0105No
16822826"DNAJC8 (DnaJ (Hsp40) homolog, subfamily C, member 8)"18654-12.5950.0121No
1698683"SFRS9 (splicing factor, arginine/serine-rich 9)"18964-16.250-0.0006No
17025920COBRA1 (cofactor of BRCA1)19016-17.134-0.0003No
17110992"SF3B2 (splicing factor 3b, subunit 2, 145kDa)"19037-17.5760.0016No
1726637SNRPG (small nuclear ribonucleoprotein polypeptide G)19107-18.9860.0012No
1735725PTBP1 (polypyrimidine tract binding protein 1)19275-22.290-0.0034No
17451585"PCF11 (PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae))"19324-23.584-0.0020No
17523020ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1)19614-32.261-0.0111No
17651497TH1L (TH1-like (Drosophila))19618-32.568-0.0059No
1771022CDK7 (cyclin-dependent kinase 7)19757-39.600-0.0063No
178220988HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)19789-41.609-0.0011No
1793183HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2))19797-42.0220.0054No
1806430"SFRS5 (splicing factor, arginine/serine-rich 5)"19923-53.6360.0080No
1815094PCBP2 (poly(rC) binding protein 2)20076-73.1830.0124No
Table: GSEA details [plain text format]



Fig 2: REACTOME|REACT_2039.1   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REACTOME|REACT_2039.1: Random ES distribution   
Gene set null distribution of ES for REACTOME|REACT_2039.1