Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classtreated
GeneSetREACTOME|REACT_467.2
Enrichment Score (ES)0.7535455
Normalized Enrichment Score (NES)1.7252798
Nominal p-value0.0
FDR q-value0.009182979
FWER p-Value0.073
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME|REACT_467.2   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
16432"SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)"38213.9760.0458Yes
26635SNRPE (small nuclear ribonucleoprotein polypeptide E)43207.4330.0918Yes
34904YBX1 (Y box binding protein 1)52184.1770.1324Yes
46627SNRPA1 (small nuclear ribonucleoprotein polypeptide A')87156.3830.1656Yes
53187HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1 (H))89155.6030.2002Yes
66636SNRPF (small nuclear ribonucleoprotein polypeptide F)93154.3880.2344Yes
73184"HNRNPD (heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa))"114136.8580.2639Yes
86426"SFRS1 (splicing factor, arginine/serine-rich 1)"119133.0170.2934Yes
910189THOC4 (THO complex 4)158117.0780.3176Yes
104809NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae))162113.7000.3427Yes
112521FUS (fusion (involved in t(12;16) in malignant liposarcoma))182107.3020.3657Yes
126634SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa)196103.4340.3881Yes
139939RBM8A (RNA binding motif protein 8A)201102.6130.4108Yes
1451639"SF3B14 (splicing factor 3B, 14 kDa subunit)"23296.6860.4308Yes
155431"POLR2B (polymerase (RNA) II (DNA directed) polypeptide B, 140kDa)"24893.7050.4509Yes
166427"SFRS2 (splicing factor, arginine/serine-rich 2)"27390.1070.4698Yes
1710907TXNL4A (thioredoxin-like 4A)28388.4840.4891Yes
186428"SFRS3 (splicing factor, arginine/serine-rich 3)"30285.6640.5073Yes
196632SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa)35278.9030.5224Yes
206629SNRPB2 (small nuclear ribonucleoprotein polypeptide B'')42169.8440.5346Yes
215436POLR2G (polymerase (RNA) II (DNA directed) polypeptide G)43967.7680.5489Yes
223192HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A))45066.4000.5632Yes
237307U2AF1 (U2 small nuclear RNA auxiliary factor 1)50961.5550.5740Yes
246633SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)52860.4710.5866Yes
255435POLR2F (polymerase (RNA) II (DNA directed) polypeptide F)53160.3460.5999Yes
269128PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast))55858.1800.6116Yes
2783443"SF3B5 (splicing factor 3b, subunit 5, 10kDa)"60554.8530.6216Yes
2884844PHF5A (PHD finger protein 5A)61654.0600.6331Yes
295441"POLR2L (polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa)"65551.8330.6428Yes
306628SNRPB (small nuclear ribonucleoprotein polypeptides B and B1)69749.7170.6518Yes
3123450"SF3B3 (splicing factor 3b, subunit 3, 130kDa)"71148.6050.6620Yes
321479"CSTF3 (cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa)"76746.2720.6696Yes
3310236HNRNPR (heterogeneous nuclear ribonucleoprotein R)80344.7120.6778Yes
344686"NCBP1 (nuclear cap binding protein subunit 1, 80kDa)"86042.2660.6845Yes
3510262"SF3B4 (splicing factor 3b, subunit 4, 49kDa)"88241.2580.6926Yes
366626SNRPA (small nuclear ribonucleoprotein polypeptide A)92040.0410.6997Yes
3722916"NCBP2 (nuclear cap binding protein subunit 2, 20kDa)"98637.5280.7049Yes
384116"MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))"100936.6190.7119Yes
399295"SFRS11 (splicing factor, arginine/serine-rich 11)"104235.3880.7182Yes
4010921"RNPS1 (RNA binding protein S1, serine-rich domain)"110733.5360.7225Yes
4111338U2AF2 (U2 small nuclear RNA auxiliary factor 2)111233.3720.7298Yes
4227316"RBMX (RNA binding motif protein, X-linked)"114232.6050.7356Yes
435438"POLR2I (polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa)"115732.2490.7421Yes
443185HNRNPF (heterogeneous nuclear ribonucleoprotein F)121730.7320.7460Yes
453188HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2 (H'))126529.7600.7503Yes
465434"POLR2E (polymerase (RNA) II (DNA directed) polypeptide E, 25kDa)"132828.2680.7535Yes
478243SMC1A (structural maintenance of chromosomes 1A)159723.9870.7456No
485433POLR2D (polymerase (RNA) II (DNA directed) polypeptide D)174721.7110.7431No
495432"POLR2C (polymerase (RNA) II (DNA directed) polypeptide C, 33kDa)"177221.3890.7467No
5065109UPF3B (UPF3 regulator of nonsense transcripts homolog B (yeast))177821.3410.7512No
516429"SFRS4 (splicing factor, arginine/serine-rich 4)"197019.1040.7460No
522963"GTF2F2 (general transcription factor IIF, polypeptide 2, 30kDa)"205618.2640.7459No
5351362CDC40 (cell division cycle 40 homolog (S. cerevisiae))209817.9420.7478No
546431"SFRS6 (splicing factor, arginine/serine-rich 6)"211317.8000.7511No
556625SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen))215917.4430.7528No
561660DHX9 (DEAH (Asp-Glu-Ala-His) box polypeptide 9)225816.5210.7516No
579410WDR57 (WD repeat domain 57 (U5 snRNP specific))243414.8490.7462No
585093PCBP1 (poly(rC) binding protein 1)260613.4290.7408No
599416DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)265313.0870.7414No
6055749CCAR1 (cell division cycle and apoptosis regulator 1)268412.9530.7428No
6129894"CPSF1 (cleavage and polyadenylation specific factor 1, 160kDa)"272012.7110.7439No
6210946"SF3A3 (splicing factor 3a, subunit 3, 60kDa)"290611.6230.7374No
6357819"LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))"313610.2510.7283No
6411051NUDT21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21)313910.2330.7305No
6551692"CPSF3 (cleavage and polyadenylation specific factor 3, 73kDa)"32999.5330.7248No
6679869"FLJ12529 (pre-mRNA cleavage factor I, 59 kDa subunit)"34828.7990.7177No
6710250SRRM1 (serine/arginine repetitive matrix 1)34848.7950.7196No
6810291"SF3A1 (splicing factor 3a, subunit 1, 120kDa)"35978.3600.7159No
699343EFTUD2 (elongation factor Tu GTP binding domain containing 2)36178.2800.7169No
705430"POLR2A (polymerase (RNA) II (DNA directed) polypeptide A, 220kDa)"36268.2310.7183No
7110914PAPOLA (poly(A) polymerase alpha)38757.1870.7076No
723191HNRNPL (heterogeneous nuclear ribonucleoprotein L)40066.7660.7027No
735437POLR2H (polymerase (RNA) II (DNA directed) polypeptide H)45965.0000.6747No
7410421CD2BP2 (CD2 (cytoplasmic tail) binding protein 2)53573.3070.6378No
751478"CSTF2 (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa)"54943.0740.6318No
7610978"CLP1 (CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae))"57832.6370.6181No
775440"POLR2K (polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa)"63211.9700.5920No
782962"GTF2F1 (general transcription factor IIF, polypeptide 1, 74kDa)"63881.8940.5892No
79652147"LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)"65321.7500.5825No
8057794SF4 (splicing factor 4)66911.5970.5750No
8110949HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0)79900.7410.5110No
828106"PABPN1 (poly(A) binding protein, nuclear 1)"98660.1670.4183No
833181HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1)13361-0.7270.2457No
849785DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)14908-1.4910.1695No
8553981"CPSF2 (cleavage and polyadenylation specific factor 2, 100kDa)"15120-1.6540.1595No
868175"SF3A2 (splicing factor 3a, subunit 2, 66kDa)"15425-1.8930.1448No
8723451"SF3B1 (splicing factor 3b, subunit 1, 155kDa)"15886-2.3480.1226No
8811100HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U-like 1)17403-5.3000.0488No
8910181RBM5 (RNA binding motif protein 5)17795-6.8970.0310No
9010594PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae))17881-7.2460.0284No
914670HNRNPM (heterogeneous nuclear ribonucleoprotein M)17936-7.5870.0274No
921477"CSTF1 (cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa)"18059-8.1900.0232No
935439"POLR2J (polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa)"18134-8.6610.0215No
943178HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1)18139-8.6910.0232No
953190HNRNPK (heterogeneous nuclear ribonucleoprotein K)18557-11.6200.0052No
9624148PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae))18644-12.5100.0037No
9722826"DNAJC8 (DnaJ (Hsp40) homolog, subfamily C, member 8)"18654-12.5950.0061No
988683"SFRS9 (splicing factor, arginine/serine-rich 9)"18964-16.250-0.0056No
9910992"SF3B2 (splicing factor 3b, subunit 2, 145kDa)"19037-17.576-0.0052No
1006637SNRPG (small nuclear ribonucleoprotein polypeptide G)19107-18.986-0.0044No
1015725PTBP1 (polypyrimidine tract binding protein 1)19275-22.290-0.0077No
10251585"PCF11 (PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae))"19324-23.584-0.0048No
10323020ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1)19614-32.261-0.0119No
104220988HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)19789-41.609-0.0112No
1053183HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2))19797-42.022-0.0022No
1066430"SFRS5 (splicing factor, arginine/serine-rich 5)"19923-53.6360.0035No
1075094PCBP2 (poly(rC) binding protein 2)20076-73.1830.0123No
Table: GSEA details [plain text format]



Fig 2: REACTOME|REACT_467.2   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REACTOME|REACT_467.2: Random ES distribution   
Gene set null distribution of ES for REACTOME|REACT_467.2