Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classcont
GeneSetKEGG|HSA05320
Enrichment Score (ES)-0.77391225
Normalized Enrichment Score (NES)-1.7924479
Nominal p-value0.0
FDR q-value0.031262223
FWER p-Value0.23
Table: GSEA Results Summary



Fig 1: Enrichment plot: KEGG|HSA05320   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
13123"HLA-DRB1 (major histocompatibility complex, class II, DR beta 1)"257913.655-0.0977No
2355"FAS (Fas (TNF receptor superfamily, member 6))"38027.517-0.1417No
33126"HLA-DRB4 (major histocompatibility complex, class II, DR beta 4)"43715.560-0.1577No
43127"HLA-DRB5 (major histocompatibility complex, class II, DR beta 5)"60782.255-0.2370No
53113"HLA-DPA1 (major histocompatibility complex, class II, DP alpha 1)"64331.847-0.2504No
63443"IFNA6 (interferon, alpha 6)"77570.861-0.3138No
73440"IFNA2 (interferon, alpha 2)"81440.676-0.3314No
83558IL2 (interleukin 2)83650.590-0.3410No
91081"CGA (glycoprotein hormones, alpha polypeptide)"87180.475-0.3573No
103115"HLA-DPB1 (major histocompatibility complex, class II, DP beta 1)"89030.414-0.3655No
11356"FASLG (Fas ligand (TNF superfamily, member 6))"91550.344-0.3771No
125551PRF1 (perforin 1 (pore forming protein))93140.302-0.3843No
133586IL10 (interleukin 10)98010.182-0.4078No
143442"IFNA5 (interferon, alpha 5)"99680.144-0.4157No
153002"GZMB (granzyme B (granzyme 2, cytotoxic T-lymphocyte-associated serine esterase 1))"104540.024-0.4396No
16942CD86 (CD86 molecule)10585-0.000-0.4460No
173446"IFNA10 (interferon, alpha 10)"10839-0.055-0.4583No
183117"HLA-DQA1 (major histocompatibility complex, class II, DQ alpha 1)"10965-0.086-0.4643No
197038TG (thyroglobulin)11042-0.102-0.4679No
203439"IFNA1 (interferon, alpha 1)"11441-0.201-0.4871No
213445"IFNA8 (interferon, alpha 8)"11458-0.205-0.4874No
223119"HLA-DQB1 (major histocompatibility complex, class II, DQ beta 1)"11665-0.252-0.4970No
233567"IL5 (interleukin 5 (colony-stimulating factor, eosinophil))"11758-0.272-0.5010No
24940CD28 (CD28 molecule)12034-0.333-0.5138No
253441"IFNA4 (interferon, alpha 4)"12451-0.445-0.5334No
263449"IFNA16 (interferon, alpha 16)"12618-0.489-0.5405No
273451"IFNA17 (interferon, alpha 17)"12711-0.517-0.5439No
287252"TSHB (thyroid stimulating hormone, beta)"13017-0.612-0.5576No
297173TPO (thyroid peroxidase)13199-0.667-0.5651No
303447"IFNA13 (interferon, alpha 13)"13257-0.686-0.5664No
31941CD80 (CD80 molecule)13279-0.692-0.5660No
323112"HLA-DOB (major histocompatibility complex, class II, DO beta)"13515-0.781-0.5759No
333108"HLA-DMA (major histocompatibility complex, class II, DM alpha)"13572-0.805-0.5769No
343444"IFNA7 (interferon, alpha 7)"13599-0.815-0.5764No
353448"IFNA14 (interferon, alpha 14)"14278-1.122-0.6074No
363452"IFNA21 (interferon, alpha 21)"14303-1.135-0.6062No
373109"HLA-DMB (major histocompatibility complex, class II, DM beta)"14469-1.219-0.6117No
383565IL4 (interleukin 4)14888-1.480-0.6291No
391493CTLA4 (cytotoxic T-lymphocyte-associated protein 4)15552-2.011-0.6574No
407253TSHR (thyroid stimulating hormone receptor)16282-2.879-0.6872No
41959CD40LG (CD40 ligand)16596-3.395-0.6953No
423111"HLA-DOA (major histocompatibility complex, class II, DO alpha)"17650-6.220-0.7338No
433122"HLA-DRA (major histocompatibility complex, class II, DR alpha)"17997-7.888-0.7338Yes
44958"CD40 (CD40 molecule, TNF receptor superfamily member 5)"18296-9.590-0.7277Yes
453134"HLA-F (major histocompatibility complex, class I, F)"19233-21.099-0.7283Yes
463133"HLA-E (major histocompatibility complex, class I, E)"19478-27.797-0.6803Yes
473135"HLA-G (major histocompatibility complex, class I, G)"19863-47.478-0.5966Yes
483105"HLA-A (major histocompatibility complex, class I, A)"20027-65.132-0.4638Yes
493106"HLA-B (major histocompatibility complex, class I, B)"20100-78.491-0.2977Yes
503107"HLA-C (major histocompatibility complex, class I, C)"20243-142.8670.0040Yes
Table: GSEA details [plain text format]



Fig 2: KEGG|HSA05320   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: KEGG|HSA05320: Random ES distribution   
Gene set null distribution of ES for KEGG|HSA05320