Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classcont
GeneSetGO|GO:0060429
Enrichment Score (ES)-0.62361497
Normalized Enrichment Score (NES)-1.7114022
Nominal p-value0.0
FDR q-value0.11675647
FWER p-Value0.861
Table: GSEA Results Summary



Fig 1: Enrichment plot: GO|GO:0060429   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
16278S100A7 (S100 calcium binding protein A7)35222.4730.0648No
24609MYC (v-myc myelocytomatosis viral oncogene homolog (avian))186106.8540.0893No
350604IL20 (interleukin 20)40971.3600.0996No
41499"CTNNB1 (catenin (cadherin-associated protein), beta 1, 88kDa)"48063.9320.1152No
55420PODXL (podocalyxin-like)140326.9660.0775No
63717JAK2 (Janus kinase 2 (a protein tyrosine kinase))152624.9470.0789No
72626GATA4 (GATA binding protein 4)184120.5720.0694No
84781NFIB (nuclear factor I/B)202618.5290.0658No
980139ZNF703 (zinc finger protein 703)203318.4760.0711No
1010395DLC1 (deleted in liver cancer 1)204518.4000.0760No
1184678FBXL10 (F-box and leucine-rich repeat protein 10)210217.8890.0786No
128915BCL10 (B-cell CLL/lymphoma 10)215517.4500.0812No
138721EDF1 (endothelial differentiation-related factor 1)231715.8800.0780No
145154PDGFA (platelet-derived growth factor alpha polypeptide)234515.5510.0813No
15675"BRCA2 (breast cancer 2, early onset)"240015.1520.0831No
16429ASCL1 (achaete-scute complex homolog 1 (Drosophila))246214.6940.0845No
1755764IFT122 (intraflagellar transport 122 homolog (Chlamydomonas))258913.5540.0823No
1810522DEAF1 (deformed epidermal autoregulatory factor 1 (Drosophila))293511.4060.0685No
197020TFAP2A (transcription factor AP-2 alpha (activating enhancer binding protein 2 alpha))295511.2840.0710No
206091"ROBO1 (roundabout, axon guidance receptor, homolog 1 (Drosophila))"296211.2260.0740No
218195MKKS (McKusick-Kaufman syndrome)301610.9380.0747No
228324FZD7 (frizzled homolog 7 (Drosophila))33609.3240.0604No
238914TIMELESS (timeless homolog (Drosophila))34039.1510.0611No
24857"CAV1 (caveolin 1, caveolae protein, 22kDa)"34069.1370.0637No
251594"CYP27B1 (cytochrome P450, family 27, subfamily B, polypeptide 1)"34179.1000.0659No
269620"CELSR1 (cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila))"34578.9090.0666No
277414VCL (vinculin)34778.8270.0683No
281855"DVL1 (dishevelled, dsh homolog 1 (Drosophila))"35448.6050.0676No
293204HOXA7 (homeobox A7)37827.5900.0581No
3080199FUZ (fuzzy homolog (Drosophila))38257.4130.0583No
318321FZD1 (frizzled homolog 1 (Drosophila))39157.0400.0559No
323976LIF (leukemia inhibitory factor (cholinergic differentiation factor))45795.0390.0245No
333207HOXA11 (homeobox A11)47204.6720.0189No
347481"WNT11 (wingless-type MMTV integration site family, member 11)"50493.9240.0038No
351969EPHA2 (EPH receptor A2)50673.8900.0041No
3623513SCRIB (scribbled homolog (Drosophila))50933.8430.0040No
37301ANXA1 (annexin A1)51103.7980.0044No
3883605CCM2 (cerebral cavernous malformation 2)51433.7230.0039No
396662SOX9 (SRY (sex determining region Y)-box 9)52043.5990.0020No
407976FZD3 (frizzled homolog 3 (Drosophila))54263.192-0.0080No
4154361"WNT4 (wingless-type MMTV integration site family, member 4)"56232.881-0.0169No
422125EVPL (envoplakin)56892.763-0.0193No
432150F2RL1 (coagulation factor II (thrombin) receptor-like 1)59232.465-0.0301No
442263FGFR2 (fibroblast growth factor receptor 2)60012.374-0.0333No
453850KRT3 (keratin 3)62192.098-0.0434No
4654206ERRFI1 (ERBB receptor feedback inhibitor 1)63821.899-0.0509No
477473"WNT3 (wingless-type MMTV integration site family, member 3)"64681.804-0.0546No
488456FOXN1 (forkhead box N1)65771.695-0.0594No
4954345SOX18 (SRY (sex determining region Y)-box 18)68701.440-0.0735No
502658GDF2 (growth differentiation factor 2)69831.353-0.0787No
517053"TGM3 (transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase))"69971.347-0.0789No
5257216"VANGL2 (vang-like 2 (van gogh, Drosophila))"70621.301-0.0817No
5383852"SETDB2 (SET domain, bifurcated 2)"73551.093-0.0959No
542298FOXD4 (forkhead box D4)74021.065-0.0979No
553975LHX1 (LIM homeobox 1)76920.892-0.1119No
5680274"SCUBE1 (signal peptide, CUB domain, EGF-like 1)"78180.826-0.1179No
577080NKX2-1 (NK2 homeobox 1)78290.819-0.1182No
589241NOG (noggin)78830.792-0.1206No
593849KRT2 (keratin 2)79480.761-0.1235No
6027283TINAG (tubulointerstitial nephritis antigen)80210.724-0.1269No
617482"WNT2B (wingless-type MMTV integration site family, member 2B)"81840.658-0.1347No
6230812SOX8 (SRY (sex determining region Y)-box 8)82530.631-0.1379No
637380UPK3A (uroplakin 3A)83210.605-0.1411No
642302FOXJ1 (forkhead box J1)83940.581-0.1445No
652022ENG (endoglin (Osler-Rendu-Weber syndrome 1))84230.570-0.1457No
667480"WNT10B (wingless-type MMTV integration site family, member 10B)"85080.540-0.1497No
677490WT1 (Wilms tumor 1)85590.526-0.1520No
68247"ALOX15B (arachidonate 15-lipoxygenase, type B)"85860.518-0.1532No
692312FLG (filaggrin)85910.516-0.1532No
706299SALL1 (sal-like 1 (Drosophila))86490.497-0.1559No
719421HAND1 (heart and neural crest derivatives expressed 1)86650.491-0.1565No
726591SNAI2 (snail homolog 2 (Drosophila))87670.455-0.1614No
736928HNF1B (HNF1 homeobox B)89420.403-0.1699No
742069EREG (epiregulin)91560.344-0.1804No
75130497OSR1 (odd-skipped related 1 (Drosophila))92990.305-0.1873No
767477"WNT7B (wingless-type MMTV integration site family, member 7B)"94050.278-0.1925No
77140628GATA5 (GATA binding protein 5)94850.257-0.1963No
782306FOXD2 (forkhead box D2)95400.245-0.1989No
794014LOR (loricrin)95410.244-0.1989No
802255FGF10 (fibroblast growth factor 10)95610.239-0.1997No
815076PAX2 (paired box 2)96030.228-0.2017No
827051"TGM1 (transglutaminase 1 (K polypeptide epidermal type I, protein-glutamine-gamma-glutamyltransferase))"96960.208-0.2062No
833458"IFNG (interferon, gamma)"98350.174-0.2130No
846495SIX1 (SIX homeobox 1)98910.159-0.2157No
8510626TRIM16 (tripartite motif-containing 16)99530.146-0.2187No
8627023FOXB1 (forkhead box B1)100480.122-0.2233No
8793986FOXP2 (forkhead box P2)100800.114-0.2248No
887474"WNT5A (wingless-type MMTV integration site family, member 5A)"101640.093-0.2289No
892487FRZB (frizzled-related protein)103600.047-0.2386No
9055212BBS7 (Bardet-Biedl syndrome 7)103750.044-0.2393No
91183"AGT (angiotensinogen (serpin peptidase inhibitor, clade A, member 8))"104470.027-0.2428No
924040LRP6 (low density lipoprotein receptor-related protein 6)104530.025-0.2430No
934041LRP5 (low density lipoprotein receptor-related protein 5)104890.016-0.2448No
943851KRT4 (keratin 4)105110.011-0.2458No
952252FGF7 (fibroblast growth factor 7 (keratinocyte growth factor))10952-0.083-0.2676No
96129880BBS5 (Bardet-Biedl syndrome 5)10999-0.092-0.2699No
977484"WNT9B (wingless-type MMTV integration site family, member 9B)"11179-0.139-0.2788No
985455POU3F3 (POU class 3 homeobox 3)11235-0.151-0.2814No
9964321SOX17 (SRY (sex determining region Y)-box 17)11243-0.153-0.2817No
1002303"FOXC2 (forkhead box C2 (MFH-1, mesenchyme forkhead 1))"11316-0.168-0.2853No
1013171FOXA3 (forkhead box A3)11323-0.170-0.2855No
10211005"SPINK5 (serine peptidase inhibitor, Kazal type 5)"11423-0.197-0.2904No
1032294FOXF1 (forkhead box F1)11433-0.200-0.2908No
1042307FOXS1 (forkhead box S1)11488-0.211-0.2934No
1053549IHH (Indian hedgehog homolog (Drosophila))11625-0.241-0.3001No
106668FOXL2 (forkhead box L2)11705-0.259-0.3039No
1073082HGF (hepatocyte growth factor (hepapoietin A; scatter factor))11714-0.262-0.3042No
1083713IVL (involucrin)11768-0.274-0.3068No
1098796SCEL (sciellin)11915-0.304-0.3140No
11064220STRA6 (stimulated by retinoic acid gene 6 homolog (mouse))12115-0.350-0.3237No
1117048"TGFBR2 (transforming growth factor, beta receptor II (70/80kDa))"12260-0.389-0.3308No
1126664SOX11 (SRY (sex determining region Y)-box 11)12616-0.488-0.3483No
11351176LEF1 (lymphoid enhancer-binding factor 1)12631-0.495-0.3488No
1146424SFRP4 (secreted frizzled-related protein 4)12681-0.506-0.3511No
1157472WNT2 (wingless-type MMTV integration site family member 2)12752-0.529-0.3544No
1165468PPARG (peroxisome proliferator-activated receptor gamma)12768-0.534-0.3550No
1177124"TNF (tumor necrosis factor (TNF superfamily, member 2))"12777-0.537-0.3552No
11851458"RHCG (Rh family, C glycoprotein)"12920-0.582-0.3621No
1197348UPK1B (uroplakin 1B)13074-0.630-0.3695No
12056998"CTNNBIP1 (catenin, beta interacting protein 1)"13117-0.643-0.3714No
1212247FGF2 (fibroblast growth factor 2 (basic))13137-0.649-0.3722No
1222876GPX1 (glutathione peroxidase 1)13143-0.650-0.3722No
123200350FOXD4L1 (forkhead box D4-like 1)13158-0.654-0.3727No
12451384"WNT16 (wingless-type MMTV integration site family, member 16)"13231-0.676-0.3761No
1256698SPRR1A (small proline-rich protein 1A)13258-0.686-0.3772No
1263170FOXA2 (forkhead box A2)13351-0.723-0.3816No
127585BBS4 (Bardet-Biedl syndrome 4)13612-0.822-0.3942No
1281482"NKX2-5 (NK2 transcription factor related, locus 5 (Drosophila))"13632-0.826-0.3949No
1296707SPRR3 (small proline-rich protein 3)13692-0.852-0.3976No
1306423SFRP2 (secreted frizzled-related protein 2)13706-0.856-0.3980No
1314855NOTCH4 (Notch homolog 4 (Drosophila))13834-0.914-0.4040No
1321041CDSN (corneodesmosin)13873-0.934-0.4056No
13381029"WNT5B (wingless-type MMTV integration site family, member 5B)"13929-0.963-0.4081No
1347476"WNT7A (wingless-type MMTV integration site family, member 7A)"13938-0.966-0.4082No
1356699SPRR1B (small proline-rich protein 1B (cornifin))14030-1.009-0.4124No
1366469SHH (sonic hedgehog homolog (Drosophila))14133-1.064-0.4172No
1372668GDNF (glial cell derived neurotrophic factor)14268-1.116-0.4235No
1388928FOXH1 (forkhead box H1)14288-1.128-0.4241No
1397475"WNT6 (wingless-type MMTV integration site family, member 6)"14314-1.141-0.4250No
1405727PTCH1 (patched homolog 1 (Drosophila))14329-1.150-0.4253No
1414208MEF2C (myocyte enhancer factor 2C)14451-1.211-0.4310No
1421755DMBT1 (deleted in malignant brain tumors 1)14541-1.266-0.4350No
1436722SRF (serum response factor (c-fos serum response element-binding transcription factor))14565-1.276-0.4358No
1449464HAND2 (heart and neural crest derivatives expressed 2)14743-1.390-0.4442No
14550943FOXP3 (forkhead box P3)14746-1.390-0.4439No
14610170DHRS9 (dehydrogenase/reductase (SDR family) member 9)14778-1.410-0.4450No
1476703SPRR2D (small proline-rich protein 2D)14782-1.414-0.4447No
1489370"ADIPOQ (adiponectin, C1Q and collagen domain containing)"14810-1.425-0.4456No
1496943TCF21 (transcription factor 21)14828-1.436-0.4460No
1506608SMO (smoothened homolog (Drosophila))14976-1.544-0.4529No
1517849PAX8 (paired box 8)15035-1.587-0.4553No
1525629PROX1 (prospero homeobox 1)15044-1.592-0.4552No
1536706SPRR2G (small proline-rich protein 2G)15209-1.730-0.4628No
15427022FOXD3 (forkhead box D3)15423-1.891-0.4728No
1556910TBX5 (T-box 5)15608-2.061-0.4814No
1564435"CITED1 (Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1)"15894-2.354-0.4948No
1578543LMO4 (LIM domain only 4)15904-2.365-0.4946No
1582297FOXD1 (forkhead box D1)16037-2.548-0.5004No
1597379UPK2 (uroplakin 2)16100-2.639-0.5027No
1602627GATA6 (GATA binding protein 6)16122-2.667-0.5029No
1616899TBX1 (T-box 1)16186-2.739-0.5052No
16285458DIXDC1 (DIX domain containing 1)16456-3.143-0.5176No
163182JAG1 (jagged 1 (Alagille syndrome))16647-3.487-0.5260No
16427031NPHP3 (nephronophthisis 3 (adolescent))16793-3.769-0.5321No
1651856"DVL2 (dishevelled, dsh homolog 2 (Drosophila))"16909-4.016-0.5366No
1661857"DVL3 (dishevelled, dsh homolog 3 (Drosophila))"17139-4.608-0.5466No
16711045UPK1A (uroplakin 1A)17286-4.955-0.5524No
1687249TSC2 (tuberous sclerosis 2)17306-5.004-0.5518No
169163183C19orf46 (chromosome 19 open reading frame 46)17491-5.597-0.5593No
17084162KIAA1109 (KIAA1109)17555-5.847-0.5607No
17155897MESP1 (mesoderm posterior 1 homolog (mouse))17684-6.362-0.5652No
1722535FZD2 (frizzled homolog 2 (Drosophila))17958-7.681-0.5764No
1733664IRF6 (interferon regulatory factor 6)17986-7.831-0.5754No
17458495OVOL2 (ovo-like 2 (Drosophila))18071-8.287-0.5771No
175652BMP4 (bone morphogenetic protein 4)18378-10.143-0.5893No
1768754ADAM9 (ADAM metallopeptidase domain 9 (meltrin gamma))18549-11.504-0.5943No
1776497SKI (v-ski sarcoma viral oncogene homolog (avian))18818-14.221-0.6034No
1788323FZD6 (frizzled homolog 6 (Drosophila))18921-15.537-0.6038No
1791999"ELF3 (E74-like factor 3 (ets domain transcription factor, epithelial-specific ))"19067-18.273-0.6055No
18025932CLIC4 (chloride intracellular channel 4)19379-25.066-0.6135No
1816659SOX4 (SRY (sex determining region Y)-box 4)19584-30.987-0.6143Yes
1827026"NR2F2 (nuclear receptor subfamily 2, group F, member 2)"19595-31.444-0.6054Yes
1833911"LAMA5 (laminin, alpha 5)"19755-39.515-0.6015Yes
18426298EHF (ets homologous factor)19794-41.896-0.5909Yes
185360AQP3 (aquaporin 3 (Gill blood group))19915-52.980-0.5810Yes
1861601"DAB2 (disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila))"19933-54.755-0.5655Yes
18727086FOXP1 (forkhead box P1)19935-54.918-0.5491Yes
1883728JUP (junction plakoglobin)19987-61.273-0.5333Yes
1891832DSP (desmoplakin)20110-82.287-0.5148Yes
19010628TXNIP (thioredoxin interacting protein)20127-86.954-0.4896Yes
1911475CSTA (cystatin A (stefin A))20163-98.608-0.4618Yes
1923398"ID2 (inhibitor of DNA binding 2, dominant negative helix-loop-helix protein)"20185-106.279-0.4311Yes
1933169FOXA1 (forkhead box A1)20189-110.661-0.3982Yes
1944831"NME2 (non-metastatic cells 2, protein (NM23B) expressed in)"20205-117.742-0.3637Yes
1952947GSTM3 (glutathione S-transferase M3 (brain))20280-185.916-0.3118Yes
196100133941CD24 (CD24 molecule)20284-192.287-0.2544Yes
197694"BTG1 (B-cell translocation gene 1, anti-proliferative)"20290-198.302-0.1954Yes
1982625GATA3 (GATA binding protein 3)20312-255.499-0.1200Yes
19910409"BASP1 (brain abundant, membrane attached signal protein 1)"20323-403.4660.0001Yes
Table: GSEA details [plain text format]



Fig 2: GO|GO:0060429   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GO|GO:0060429: Random ES distribution   
Gene set null distribution of ES for GO|GO:0060429