#### Enrichment in phenotype: treated (3 samples)

- 3189 / 5373 gene sets are upregulated in phenotype treated
- 344 gene sets are significant at FDR < 25%
- 204 gene sets are significantly enriched at nominal pvalue < 1%
- 489 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results

#### Enrichment in phenotype: cont (3 samples)

- 2184 / 5373 gene sets are upregulated in phenotype cont
- 48 gene sets are significantly enriched at FDR < 25%
- 102 gene sets are significantly enriched at nominal pvalue < 1%
- 302 gene sets are significantly enriched at nominal pvalue < 5%
- Snapshot of enrichment results
- Detailed enrichment results in html format
- Detailed enrichment results in excel format (tab delimited text)
- Guide to interpret results

#### Dataset details

- The dataset has 20326 features (genes)
- No probe set => gene symbol collapsing was requested, so all 20326 features were used

#### Gene set details

- Gene set size filters (min=10, max=500) resulted in filtering out 9920 / 15293 gene sets
- The remaining 5373 gene sets were used in the analysis
- List of gene sets used and their sizes (restricted to features in the specified dataset)

#### Gene markers for the treated versus cont comparison

- The dataset has 20326 features (genes)
- # of markers for phenotype treated: 10584 (52.1% ) with correlation area 59.9%
- # of markers for phenotype cont: 9742 (47.9% ) with correlation area 40.1%
- Detailed rank ordered gene list for all features in the dataset
- Heat map and gene list correlation profile for all features in the dataset

#### Global statistics and plots

- Plot of p-values vs. NES
- Global ES histogram

#### Other

- Parameters used for this analysis