Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classtreated
GeneSetGO|GO:0000377
Enrichment Score (ES)0.7007905
Normalized Enrichment Score (NES)1.7000245
Nominal p-value0.0
FDR q-value0.01321417
FWER p-Value0.207
Table: GSEA Results Summary



Fig 1: Enrichment plot: GO|GO:0000377   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
16432"SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)"38213.9760.0309Yes
26635SNRPE (small nuclear ribonucleoprotein polypeptide E)43207.4330.0625Yes
34904YBX1 (Y box binding protein 1)52184.1770.0903Yes
46434"SFRS10 (splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila))"63174.6510.1166Yes
56627SNRPA1 (small nuclear ribonucleoprotein polypeptide A')87156.3830.1394Yes
63187HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1 (H))89155.6030.1632Yes
76636SNRPF (small nuclear ribonucleoprotein polypeptide F)93154.3880.1867Yes
83184"HNRNPD (heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa))"114136.8580.2067Yes
96426"SFRS1 (splicing factor, arginine/serine-rich 1)"119133.0170.2269Yes
1010189THOC4 (THO complex 4)158117.0780.2430Yes
114809NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae))162113.7000.2602Yes
1225929GEMIN5 (gem (nuclear organelle) associated protein 5)175109.0630.2764Yes
132521FUS (fusion (involved in t(12;16) in malignant liposarcoma))182107.3020.2925Yes
146634SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa)196103.4340.3077Yes
159939RBM8A (RNA binding motif protein 8A)201102.6130.3233Yes
1651639"SF3B14 (splicing factor 3B, 14 kDa subunit)"23296.6860.3366Yes
175431"POLR2B (polymerase (RNA) II (DNA directed) polypeptide B, 140kDa)"24893.7050.3502Yes
186427"SFRS2 (splicing factor, arginine/serine-rich 2)"27390.1070.3628Yes
1910907TXNL4A (thioredoxin-like 4A)28388.4840.3759Yes
206428"SFRS3 (splicing factor, arginine/serine-rich 3)"30285.6640.3882Yes
216632SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa)35278.9030.3978Yes
2210492"SYNCRIP (synaptotagmin binding, cytoplasmic RNA interacting protein)"39672.7550.4068Yes
2310419PRMT5 (protein arginine methyltransferase 5)41371.0430.4169Yes
246629SNRPB2 (small nuclear ribonucleoprotein polypeptide B'')42169.8440.4273Yes
255436POLR2G (polymerase (RNA) II (DNA directed) polypeptide G)43967.7680.4368Yes
263192HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A))45066.4000.4465Yes
2727339PRPF19 (PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae))49562.3700.4539Yes
287307U2AF1 (U2 small nuclear RNA auxiliary factor 1)50961.5550.4627Yes
2951645PPIL1 (peptidylprolyl isomerase (cyclophilin)-like 1)51061.5150.4721Yes
3010772FUSIP1 (FUS interacting protein (serine/arginine-rich) 1)51161.4190.4815Yes
316633SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)52860.4710.4900Yes
325435POLR2F (polymerase (RNA) II (DNA directed) polypeptide F)53160.3460.4991Yes
339128PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast))55858.1800.5068Yes
3427258"LSM3 (LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae))"56157.8750.5155Yes
353189HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3 (2H9))56357.7910.5243Yes
3651690"LSM7 (LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae))"56957.4700.5329Yes
3783443"SF3B5 (splicing factor 3b, subunit 5, 10kDa)"60554.8530.5396Yes
3884844PHF5A (PHD finger protein 5A)61654.0600.5474Yes
395441"POLR2L (polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa)"65551.8330.5534Yes
406628SNRPB (small nuclear ribonucleoprotein polypeptides B and B1)69749.7170.5590Yes
4123450"SF3B3 (splicing factor 3b, subunit 3, 130kDa)"71148.6050.5658Yes
421479"CSTF3 (cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa)"76746.2720.5702Yes
4310236HNRNPR (heterogeneous nuclear ribonucleoprotein R)80344.7120.5753Yes
449775"EIF4A3 (eukaryotic translation initiation factor 4A, isoform 3)"82943.5000.5807Yes
456421SFPQ (splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated))85842.2920.5858Yes
464686"NCBP1 (nuclear cap binding protein subunit 1, 80kDa)"86042.2660.5922Yes
4710262"SF3B4 (splicing factor 3b, subunit 4, 49kDa)"88241.2580.5975Yes
486626SNRPA (small nuclear ribonucleoprotein polypeptide A)92040.0410.6018Yes
4979084WDR77 (WD repeat domain 77)95038.4490.6063Yes
5079833GEMIN6 (gem (nuclear organelle) associated protein 6)96737.9740.6113Yes
5122916"NCBP2 (nuclear cap binding protein subunit 2, 20kDa)"98637.5280.6161Yes
524116"MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))"100936.6190.6207Yes
539295"SFRS11 (splicing factor, arginine/serine-rich 11)"104235.3880.6245Yes
5429896TRA2A (transformer-2 alpha)109233.9950.6273Yes
5510921"RNPS1 (RNA binding protein S1, serine-rich domain)"110733.5360.6317Yes
5611338U2AF2 (U2 small nuclear RNA auxiliary factor 2)111233.3720.6366Yes
5727316"RBMX (RNA binding motif protein, X-linked)"114232.6050.6402Yes
585438"POLR2I (polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa)"115732.2490.6444Yes
591207"CLNS1A (chloride channel, nucleotide-sensitive, 1A)"118631.4530.6479Yes
6011168PSIP1 (PC4 and SFRS1 interacting protein 1)118831.4040.6526Yes
613185HNRNPF (heterogeneous nuclear ribonucleoprotein F)121730.7320.6559Yes
626606"SMN1 (survival of motor neuron 1, telomeric)"123330.3500.6598Yes
633188HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2 (H'))126529.7600.6629Yes
645434"POLR2E (polymerase (RNA) II (DNA directed) polypeptide E, 25kDa)"132828.2680.6641Yes
6551503CWC15 (CWC15 homolog (S. cerevisiae))133928.0130.6679Yes
6651428DDX41 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 41)134527.8800.6719Yes
6710465PPIH (peptidylprolyl isomerase H (cyclophilin H))136427.5840.6753Yes
6811218DDX20 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 20)142026.7190.6766Yes
6958517RBM25 (RNA binding motif protein 25)142626.5940.6805Yes
7023517SKIV2L2 (superkiller viralicidic activity 2-like 2 (S. cerevisiae))152924.8940.6792Yes
7150628GEMIN4 (gem (nuclear organelle) associated protein 4)158924.0860.6800Yes
728243SMC1A (structural maintenance of chromosomes 1A)159723.9870.6833Yes
737072TIA1 (TIA1 cytotoxic granule-associated RNA binding protein)164623.2600.6845Yes
7451808"RNUXA (RNA U, small nuclear RNA export adaptor (phosphorylation regulated))"166023.1000.6874Yes
755433POLR2D (polymerase (RNA) II (DNA directed) polypeptide D)174721.7110.6864Yes
761653DDX1 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 1)175421.6030.6894Yes
775432"POLR2C (polymerase (RNA) II (DNA directed) polypeptide C, 33kDa)"177221.3890.6919Yes
7865109UPF3B (UPF3 regulator of nonsense transcripts homolog B (yeast))177821.3410.6949Yes
796631SNRPC (small nuclear ribonucleoprotein polypeptide C)187120.2400.6934Yes
806429"SFRS4 (splicing factor, arginine/serine-rich 4)"197019.1040.6915Yes
8151319RSRC1 (arginine/serine-rich coiled-coil 1)204318.4080.6907Yes
822963"GTF2F2 (general transcription factor IIF, polypeptide 2, 30kDa)"205618.2640.6929Yes
8379760GEMIN7 (gem (nuclear organelle) associated protein 7)205718.2560.6957Yes
8451362CDC40 (cell division cycle 40 homolog (S. cerevisiae))209817.9420.6965Yes
856431"SFRS6 (splicing factor, arginine/serine-rich 6)"211317.8000.6985Yes
866625SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen))215917.4430.6990Yes
875356"PLRG1 (pleiotropic regulator 1 (PRL1 homolog, Arabidopsis))"223916.7590.6976Yes
881660DHX9 (DEAH (Asp-Glu-Ala-His) box polypeptide 9)225816.5210.6993Yes
8924144TFIP11 (tuftelin interacting protein 11)227816.2070.7008Yes
909410WDR57 (WD repeat domain 57 (U5 snRNP specific))243414.8490.6954No
9110283SDCCAG10 (serologically defined colon cancer antigen 10)245414.7280.6967No
9223210JMJD6 (jumonji domain containing 6)248714.4200.6973No
935093PCBP1 (poly(rC) binding protein 1)260613.4290.6935No
949416DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)265313.0870.6932No
9555749CCAR1 (cell division cycle and apoptosis regulator 1)268412.9530.6937No
9629894"CPSF1 (cleavage and polyadenylation specific factor 1, 160kDa)"272012.7110.6939No
978220DGCR14 (DiGeorge syndrome critical region gene 14)280812.1670.6915No
9823398PPWD1 (peptidylprolyl isomerase domain and WD repeat containing 1)287211.8290.6901No
9910946"SF3A3 (splicing factor 3a, subunit 3, 60kDa)"290611.6230.6903No
1005936RBM4 (RNA binding motif protein 4)294111.3800.6903No
1012483FRG1 (FSHD region gene 1)310710.3980.6837No
10257819"LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))"313610.2510.6839No
10311051NUDT21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21)313910.2330.6854No
10451692"CPSF3 (cleavage and polyadenylation specific factor 3, 73kDa)"32999.5330.6789No
10596764TGS1 (trimethylguanosine synthase homolog (S. cerevisiae))33889.2000.6760No
10610450PPIE (peptidylprolyl isomerase E (cyclophilin E))34259.0670.6756No
1076733SRPK2 (SFRS protein kinase 2)34768.8310.6745No
10879869"FLJ12529 (pre-mRNA cleavage factor I, 59 kDa subunit)"34828.7990.6756No
10910250SRRM1 (serine/arginine repetitive matrix 1)34848.7950.6769No
1106433"SFRS8 (splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila))"35748.4570.6737No
11110291"SF3A1 (splicing factor 3a, subunit 1, 120kDa)"35978.3600.6739No
1129343EFTUD2 (elongation factor Tu GTP binding domain containing 2)36178.2800.6742No
11311193WBP4 (WW domain binding protein 4 (formin binding protein 21))36208.2670.6754No
1145430"POLR2A (polymerase (RNA) II (DNA directed) polypeptide A, 220kDa)"36268.2310.6764No
1159716AQR (aquarius homolog (mouse))37227.8600.6729No
11610914PAPOLA (poly(A) polymerase alpha)38757.1870.6665No
1179129PRPF3 (PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae))39117.0550.6658No
1183191HNRNPL (heterogeneous nuclear ribonucleoprotein L)40066.7660.6622No
1198487SIP1 (survival of motor neuron protein interacting protein 1)42336.0090.6519No
12057461ISY1 (ISY1 splicing factor homolog (S. cerevisiae))43855.5050.6452No
12184081CCDC55 (coiled-coil domain containing 55)44055.4720.6451No
12284292MORG1 (mitogen-activated protein kinase organizer 1)44365.4090.6444No
12358509C19orf29 (chromosome 19 open reading frame 29)44435.3910.6450No
1245437POLR2H (polymerase (RNA) II (DNA directed) polypeptide H)45965.0000.6382No
1259092SART1 (squamous cell carcinoma antigen recognized by T cells)47074.7030.6334No
126988CDC5L (CDC5 cell division cycle 5-like (S. pombe))49154.2040.6238No
12755696RBM22 (RNA binding motif protein 22)50373.9490.6184No
12822938SNW1 (SNW domain containing 1)50773.8810.6170No
12910421CD2BP2 (CD2 (cytoplasmic tail) binding protein 2)53573.3070.6037No
1301478"CSTF2 (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa)"54943.0740.5974No
13157703KIAA1604 (KIAA1604 protein)55702.9610.5941No
13210978"CLP1 (CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae))"57832.6370.5840No
13323543RBM9 (RNA binding motif protein 9)59802.3990.5746No
1345440"POLR2K (polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa)"63211.9700.5580No
1352962"GTF2F1 (general transcription factor IIF, polypeptide 1, 74kDa)"63881.8940.5551No
136652147"LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)"65321.7500.5482No
13760625DHX35 (DEAH (Asp-Glu-Ala-His) box polypeptide 35)66641.6200.5420No
13857794SF4 (splicing factor 4)66911.5970.5409No
13910569SLU7 (SLU7 splicing factor homolog (S. cerevisiae))74241.0510.5047No
14010658"CUGBP1 (CUG triplet repeat, RNA binding protein 1)"74271.0480.5048No
14110713USP39 (ubiquitin specific peptidase 39)78090.8320.4860No
14210949HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0)79900.7410.4771No
1435940"RBMY1A1 (RNA binding motif protein, Y-linked, family 1, member A1)"88360.4320.4352No
1447536SF1 (splicing factor 1)92850.3090.4130No
1459169"SFRS2IP (splicing factor, arginine/serine-rich 2, interacting protein)"95340.2470.4007No
1468106"PABPN1 (poly(A) binding protein, nuclear 1)"98660.1670.3843No
14760677"BRUNOL6 (bruno-like 6, RNA binding protein (Drosophila))"12006-0.3240.2781No
14810212DDX39 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 39)12643-0.4970.2466No
149135295SRrp35 (serine-arginine repressor protein (35 kDa))12746-0.5270.2416No
15056853"BRUNOL4 (bruno-like 4, RNA binding protein (Drosophila))"13321-0.7110.2132No
1513181HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1)13361-0.7270.2113No
1529785DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)14908-1.4910.1348No
15353981"CPSF2 (cleavage and polyadenylation specific factor 2, 100kDa)"15120-1.6540.1245No
15456949XAB2 (XPA binding protein 2)15293-1.7870.1163No
1558175"SF3A2 (splicing factor 3a, subunit 2, 66kDa)"15425-1.8930.1100No
15622913"RALY (RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)))"15765-2.2250.0935No
15723451"SF3B1 (splicing factor 3b, subunit 1, 155kDa)"15886-2.3480.0879No
15851691"LSM8 (LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae))"15943-2.4250.0855No
1598899PRPF4B (PRP4 pre-mRNA processing factor 4 homolog B (yeast))16019-2.5210.0822No
16054960GEMIN8 (gem (nuclear organelle) associated protein 8)16351-2.9920.0662No
16154496PRMT7 (protein arginine methyltransferase 7)16473-3.1760.0607No
16226121PRPF31 (PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae))16741-3.6920.0480No
16310073SNUPN (snurportin 1)16960-4.1450.0378No
16429890RBM15B (RNA binding motif protein 15B)17097-4.5170.0317No
1651659DHX8 (DEAH (Asp-Glu-Ala-His) box polypeptide 8)17140-4.6100.0303No
16611189TNRC4 (trinucleotide repeat containing 4)17169-4.6670.0297No
16711100HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U-like 1)17403-5.3000.0189No
16855094GPATCH1 (G patch domain containing 1)17675-6.3240.0064No
16910181RBM5 (RNA binding motif protein 5)17795-6.8970.0016No
17010594PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae))17881-7.246-0.0016No
1714670HNRNPM (heterogeneous nuclear ribonucleoprotein M)17936-7.587-0.0031No
1721477"CSTF1 (cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa)"18059-8.190-0.0079No
1735439"POLR2J (polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa)"18134-8.661-0.0102No
1743178HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1)18139-8.691-0.0091No
1758233"ZRSR2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2)"18162-8.812-0.0088No
1763190HNRNPK (heterogeneous nuclear ribonucleoprotein K)18557-11.620-0.0266No
17723524SRRM2 (serine/arginine repetitive matrix 2)18558-11.635-0.0249No
17855596"ZCCHC8 (zinc finger, CCHC domain containing 8)"18579-11.840-0.0240No
17924148PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae))18644-12.510-0.0253No
18022826"DNAJC8 (DnaJ (Hsp40) homolog, subfamily C, member 8)"18654-12.595-0.0238No
18125949"SYF2 (SYF2 homolog, RNA splicing factor (S. cerevisiae))"18657-12.624-0.0220No
18253938PPIL3 (peptidylprolyl isomerase (cyclophilin)-like 3)18919-15.513-0.0326No
18351340CRNKL1 (crooked neck pre-mRNA splicing factor-like 1 (Drosophila))18946-16.005-0.0314No
1848683"SFRS9 (splicing factor, arginine/serine-rich 9)"18964-16.250-0.0298No
18510992"SF3B2 (splicing factor 3b, subunit 2, 145kDa)"19037-17.576-0.0306No
1861655DDX5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5)19052-17.892-0.0286No
1876637SNRPG (small nuclear ribonucleoprotein polypeptide G)19107-18.986-0.0284No
1888621CDC2L5 (cell division cycle 2-like 5 (cholinesterase-related cell division controller))19181-20.200-0.0289No
1895725PTBP1 (polypyrimidine tract binding protein 1)19275-22.290-0.0301No
19051585"PCF11 (PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae))"19324-23.584-0.0289No
1917919BAT1 (HLA-B associated transcript 1)19345-24.118-0.0262No
19223020ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1)19614-32.261-0.0345No
193220988HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)19789-41.609-0.0368No
1943183HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2))19797-42.022-0.0307No
1956430"SFRS5 (splicing factor, arginine/serine-rich 5)"19923-53.636-0.0287No
19626986"PABPC1 (poly(A) binding protein, cytoplasmic 1)"20057-70.422-0.0245No
1975094PCBP2 (poly(rC) binding protein 2)20076-73.183-0.0142No
1985411"PNN (pinin, desmosome associated protein)"20269-172.9900.0028No
Table: GSEA details [plain text format]



Fig 2: GO|GO:0000377   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GO|GO:0000377: Random ES distribution   
Gene set null distribution of ES for GO|GO:0000377