Dataset | expression_12hrs.Phenotype.cls #treated_versus_cont.Phenotype.cls #treated_versus_cont_repos |
Phenotype | Phenotype.cls#treated_versus_cont_repos |
Upregulated in class | treated |
GeneSet | GO|GO:0005635 |
Enrichment Score (ES) | 0.6804419 |
Normalized Enrichment Score (NES) | 1.6087886 |
Nominal p-value | 0.0 |
FDR q-value | 0.049611915 |
FWER p-Value | 0.981 |
PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|---|
1 | 5901 | "RAN (RAN, member RAS oncogene family)" | 27 | 250.127 | 0.0564 | Yes | ||
2 | 10202 | DHRS2 (dehydrogenase/reductase (SDR family) member 2) | 31 | 238.843 | 0.1113 | Yes | ||
3 | 26509 | "FER1L3 (fer-1-like 3, myoferlin (C. elegans))" | 45 | 196.111 | 0.1559 | Yes | ||
4 | 1984 | EIF5A (eukaryotic translation initiation factor 5A) | 68 | 172.120 | 0.1945 | Yes | ||
5 | 51649 | MRPS23 (mitochondrial ribosomal protein S23) | 71 | 168.492 | 0.2333 | Yes | ||
6 | 10204 | NUTF2 (nuclear transport factor 2) | 111 | 139.450 | 0.2636 | Yes | ||
7 | 5902 | RANBP1 (RAN binding protein 1) | 172 | 109.952 | 0.2859 | Yes | ||
8 | 3837 | KPNB1 (karyopherin (importin) beta 1) | 180 | 107.701 | 0.3104 | Yes | ||
9 | 664 | BNIP3 (BCL2/adenovirus E1B 19kDa interacting protein 3) | 228 | 97.404 | 0.3306 | Yes | ||
10 | 8407 | TAGLN2 (transgelin 2) | 241 | 94.440 | 0.3518 | Yes | ||
11 | 11335 | "CBX3 (chromobox homolog 3 (HP1 gamma homolog, Drosophila))" | 267 | 90.758 | 0.3715 | Yes | ||
12 | 57122 | NUP107 (nucleoporin 107kDa) | 276 | 89.588 | 0.3918 | Yes | ||
13 | 8480 | RAE1 (RAE1 RNA export 1 homolog (S. pombe)) | 322 | 83.312 | 0.4087 | Yes | ||
14 | 4085 | MAD2L1 (MAD2 mitotic arrest deficient-like 1 (yeast)) | 360 | 77.868 | 0.4249 | Yes | ||
15 | 11260 | "XPOT (exportin, tRNA (nuclear export receptor for tRNAs))" | 367 | 76.844 | 0.4423 | Yes | ||
16 | 1717 | DHCR7 (7-dehydrocholesterol reductase) | 382 | 75.084 | 0.4589 | Yes | ||
17 | 7112 | TMPO (thymopoietin) | 392 | 73.400 | 0.4754 | Yes | ||
18 | 4001 | LMNB1 (lamin B1) | 410 | 71.266 | 0.4910 | Yes | ||
19 | 27346 | TMEM97 (transmembrane protein 97) | 420 | 69.895 | 0.5067 | Yes | ||
20 | 51154 | MRTO4 (mRNA turnover 4 homolog (S. cerevisiae)) | 434 | 68.377 | 0.5218 | Yes | ||
21 | 2643 | GCH1 (GTP cyclohydrolase 1) | 456 | 65.524 | 0.5359 | Yes | ||
22 | 81929 | SEH1L (SEH1-like (S. cerevisiae)) | 491 | 62.765 | 0.5487 | Yes | ||
23 | 129401 | NUP35 (nucleoporin 35kDa) | 502 | 61.873 | 0.5625 | Yes | ||
24 | 7514 | "XPO1 (exportin 1 (CRM1 homolog, yeast))" | 539 | 59.462 | 0.5744 | Yes | ||
25 | 10885 | WDR3 (WD repeat domain 3) | 698 | 49.508 | 0.5780 | Yes | ||
26 | 27000 | "DNAJC2 (DnaJ (Hsp40) homolog, subfamily C, member 2)" | 724 | 48.037 | 0.5878 | Yes | ||
27 | 79023 | NUP37 (nucleoporin 37kDa) | 770 | 46.189 | 0.5963 | Yes | ||
28 | 55706 | TMEM48 (transmembrane protein 48) | 806 | 44.541 | 0.6048 | Yes | ||
29 | 10527 | IPO7 (importin 7) | 886 | 41.082 | 0.6104 | Yes | ||
30 | 9972 | NUP153 (nucleoporin 153kDa) | 924 | 39.672 | 0.6177 | Yes | ||
31 | 23636 | NUP62 (nucleoporin 62kDa) | 980 | 37.692 | 0.6237 | Yes | ||
32 | 9589 | WTAP (Wilms tumor 1 associated protein) | 994 | 37.201 | 0.6316 | Yes | ||
33 | 79711 | IPO4 (importin 4) | 1030 | 35.811 | 0.6381 | Yes | ||
34 | 55151 | TMEM38B (transmembrane protein 38B) | 1124 | 33.161 | 0.6412 | Yes | ||
35 | 23165 | NUP205 (nucleoporin 205kDa) | 1143 | 32.605 | 0.6478 | Yes | ||
36 | 1019 | CDK4 (cyclin-dependent kinase 4) | 1511 | 25.210 | 0.6354 | Yes | ||
37 | 23 | "ABCF1 (ATP-binding cassette, sub-family F (GCN20), member 1)" | 1527 | 24.943 | 0.6404 | Yes | ||
38 | 53371 | NUP54 (nucleoporin 54kDa) | 1604 | 23.859 | 0.6422 | Yes | ||
39 | 5987 | TRIM27 (tripartite motif-containing 27) | 1615 | 23.691 | 0.6471 | Yes | ||
40 | 29057 | "FAM156A (family with sequence similarity 156, member A)" | 1640 | 23.371 | 0.6513 | Yes | ||
41 | 9631 | NUP155 (nucleoporin 155kDa) | 1641 | 23.360 | 0.6567 | Yes | ||
42 | 9818 | NUPL1 (nucleoporin like 1) | 1670 | 22.944 | 0.6606 | Yes | ||
43 | 57142 | RTN4 (reticulon 4) | 1735 | 21.961 | 0.6625 | Yes | ||
44 | 596 | BCL2 (B-cell CLL/lymphoma 2) | 1760 | 21.505 | 0.6663 | Yes | ||
45 | 1615 | DARS (aspartyl-tRNA synthetase) | 1784 | 21.311 | 0.6701 | Yes | ||
46 | 23468 | "CBX5 (chromobox homolog 5 (HP1 alpha homolog, Drosophila))" | 1800 | 21.060 | 0.6742 | Yes | ||
47 | 23279 | NUP160 (nucleoporin 160kDa) | 1804 | 20.988 | 0.6789 | Yes | ||
48 | 23224 | "SYNE2 (spectrin repeat containing, nuclear envelope 2)" | 1868 | 20.287 | 0.6804 | Yes | ||
49 | 5903 | RANBP2 (RAN binding protein 2) | 2164 | 17.399 | 0.6698 | No | ||
50 | 80314 | EPC1 (enhancer of polycomb homolog 1 (Drosophila)) | 2171 | 17.362 | 0.6735 | No | ||
51 | 3843 | IPO5 (importin 5) | 2329 | 15.804 | 0.6694 | No | ||
52 | 9801 | MRPL19 (mitochondrial ribosomal protein L19) | 2365 | 15.436 | 0.6712 | No | ||
53 | 1192 | CLIC1 (chloride intracellular channel 1) | 2373 | 15.349 | 0.6744 | No | ||
54 | 663 | BNIP2 (BCL2/adenovirus E1B 19kDa interacting protein 2) | 2446 | 14.750 | 0.6743 | No | ||
55 | 22926 | ATF6 (activating transcription factor 6) | 2528 | 14.054 | 0.6735 | No | ||
56 | 5422 | "POLA1 (polymerase (DNA directed), alpha 1, catalytic subunit)" | 2543 | 13.945 | 0.6760 | No | ||
57 | 5108 | PCM1 (pericentriolar material 1) | 2551 | 13.878 | 0.6789 | No | ||
58 | 23511 | NUP188 (nucleoporin 188kDa) | 2623 | 13.256 | 0.6784 | No | ||
59 | 1104 | RCC1 (regulator of chromosome condensation 1) | 2700 | 12.870 | 0.6776 | No | ||
60 | 9688 | NUP93 (nucleoporin 93kDa) | 2709 | 12.814 | 0.6802 | No | ||
61 | 55746 | NUP133 (nucleoporin 133kDa) | 2787 | 12.281 | 0.6792 | No | ||
62 | 81488 | "GRINL1A (glutamate receptor, ionotropic, N-methyl D-aspartate-like 1A)" | 2886 | 11.747 | 0.6770 | No | ||
63 | 23411 | SIRT1 (sirtuin (silent mating type information regulation 2 homolog) 1 (S. cerevisiae)) | 2933 | 11.420 | 0.6774 | No | ||
64 | 5905 | RANGAP1 (Ran GTPase activating protein 1) | 2997 | 11.060 | 0.6768 | No | ||
65 | 10456 | HAX1 (HCLS1 associated protein X-1) | 3251 | 9.709 | 0.6665 | No | ||
66 | 79902 | NUP85 (nucleoporin 85kDa) | 3289 | 9.586 | 0.6669 | No | ||
67 | 348995 | NUP43 (nucleoporin 43kDa) | 3355 | 9.350 | 0.6658 | No | ||
68 | 23225 | NUP210 (nucleoporin 210kDa) | 3396 | 9.169 | 0.6660 | No | ||
69 | 9782 | MATR3 (matrin 3) | 3491 | 8.770 | 0.6633 | No | ||
70 | 8481 | OFD1 (oral-facial-digital syndrome 1) | 3498 | 8.751 | 0.6650 | No | ||
71 | 2010 | EMD (emerin) | 3549 | 8.598 | 0.6645 | No | ||
72 | 3930 | LBR (lamin B receptor) | 3589 | 8.404 | 0.6645 | No | ||
73 | 7341 | SUMO1 (SMT3 suppressor of mif two 3 homolog 1 (S. cerevisiae)) | 3657 | 8.157 | 0.6631 | No | ||
74 | 79073 | TMEM109 (transmembrane protein 109) | 3933 | 6.993 | 0.6511 | No | ||
75 | 5048 | "PAFAH1B1 (platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa)" | 3950 | 6.956 | 0.6519 | No | ||
76 | 23353 | UNC84A (unc-84 homolog A (C. elegans)) | 4057 | 6.598 | 0.6482 | No | ||
77 | 142 | PARP1 (poly (ADP-ribose) polymerase 1) | 4089 | 6.479 | 0.6481 | No | ||
78 | 25909 | AHCTF1 (AT hook containing transcription factor 1) | 4464 | 5.335 | 0.6308 | No | ||
79 | 23592 | LEMD3 (LEM domain containing 3) | 4495 | 5.262 | 0.6305 | No | ||
80 | 8379 | MAD1L1 (MAD1 mitotic arrest deficient-like 1 (yeast)) | 4753 | 4.581 | 0.6189 | No | ||
81 | 23039 | XPO7 (exportin 7) | 4783 | 4.527 | 0.6185 | No | ||
82 | 23200 | "ATP11B (ATPase, class VI, type 11B)" | 4812 | 4.447 | 0.6181 | No | ||
83 | 9883 | POM121 (POM121 membrane glycoprotein (rat)) | 5027 | 3.978 | 0.6084 | No | ||
84 | 10553 | "HTATIP2 (HIV-1 Tat interactive protein 2, 30kDa)" | 5584 | 2.943 | 0.5815 | No | ||
85 | 10280 | "OPRS1 (opioid receptor, sigma 1)" | 5587 | 2.940 | 0.5821 | No | ||
86 | 2623 | GATA1 (GATA binding protein 1 (globin transcription factor 1)) | 5648 | 2.850 | 0.5798 | No | ||
87 | 4928 | NUP98 (nucleoporin 98kDa) | 5721 | 2.716 | 0.5768 | No | ||
88 | 11270 | NRM (nurim (nuclear envelope membrane protein)) | 5730 | 2.709 | 0.5771 | No | ||
89 | 662 | BNIP1 (BCL2/adenovirus E1B 19kDa interacting protein 1) | 5901 | 2.495 | 0.5692 | No | ||
90 | 241 | ALOX5AP (arachidonate 5-lipoxygenase-activating protein) | 6162 | 2.159 | 0.5568 | No | ||
91 | 6720 | SREBF1 (sterol regulatory element binding transcription factor 1) | 6174 | 2.148 | 0.5568 | No | ||
92 | 822 | "CAPG (capping protein (actin filament), gelsolin-like)" | 7120 | 1.254 | 0.5102 | No | ||
93 | 23399 | DULLARD (dullard homolog (Xenopus laevis)) | 7124 | 1.252 | 0.5104 | No | ||
94 | 57534 | MIB1 (mindbomb homolog 1 (Drosophila)) | 7786 | 0.844 | 0.4778 | No | ||
95 | 3710 | "ITPR3 (inositol 1,4,5-triphosphate receptor, type 3)" | 8025 | 0.723 | 0.4661 | No | ||
96 | 161176 | C14orf49 (chromosome 14 open reading frame 49) | 8308 | 0.611 | 0.4523 | No | ||
97 | 4086 | SMAD1 (SMAD family member 1) | 8706 | 0.479 | 0.4327 | No | ||
98 | 79041 | TMEM38A (transmembrane protein 38A) | 9226 | 0.324 | 0.4071 | No | ||
99 | 6783 | "SULT1E1 (sulfotransferase family 1E, estrogen-preferring, member 1)" | 9415 | 0.275 | 0.3978 | No | ||
100 | 3000 | "GUCY2D (guanylate cyclase 2D, membrane (retina-specific))" | 9476 | 0.260 | 0.3949 | No | ||
101 | 2986 | "GUCY2F (guanylate cyclase 2F, retinal)" | 9670 | 0.216 | 0.3854 | No | ||
102 | 2692 | GHRHR (growth hormone releasing hormone receptor) | 9952 | 0.146 | 0.3715 | No | ||
103 | 144165 | PRICKLE1 (prickle homolog 1 (Drosophila)) | 10110 | 0.108 | 0.3637 | No | ||
104 | 358 | AQP1 (aquaporin 1 (Colton blood group)) | 10226 | 0.078 | 0.3581 | No | ||
105 | 9472 | AKAP6 (A kinase (PRKA) anchor protein 6) | 10376 | 0.044 | 0.3507 | No | ||
106 | 11262 | SP140 (SP140 nuclear body protein) | 10507 | 0.013 | 0.3442 | No | ||
107 | 23439 | "ATP1B4 (ATPase, (Na+)/K+ transporting, beta 4 polypeptide)" | 10727 | -0.031 | 0.3334 | No | ||
108 | 59343 | SENP2 (SUMO1/sentrin/SMT3 specific peptidase 2) | 11845 | -0.290 | 0.2781 | No | ||
109 | 90523 | C6orf142 (chromosome 6 open reading frame 142) | 13012 | -0.611 | 0.2204 | No | ||
110 | 5733 | PTGER3 (prostaglandin E receptor 3 (subtype EP3)) | 13411 | -0.745 | 0.2009 | No | ||
111 | 7468 | WHSC1 (Wolf-Hirschhorn syndrome candidate 1) | 14027 | -1.008 | 0.1706 | No | ||
112 | 129787 | TMEM18 (transmembrane protein 18) | 14600 | -1.296 | 0.1425 | No | ||
113 | 894 | CCND2 (cyclin D2) | 14670 | -1.339 | 0.1394 | No | ||
114 | 4864 | "NPC1 (Niemann-Pick disease, type C1)" | 14730 | -1.383 | 0.1368 | No | ||
115 | 11277 | TREX1 (three prime repair exonuclease 1) | 14986 | -1.554 | 0.1245 | No | ||
116 | 7189 | TRAF6 (TNF receptor-associated factor 6) | 15046 | -1.595 | 0.1220 | No | ||
117 | 240 | ALOX5 (arachidonate 5-lipoxygenase) | 15060 | -1.608 | 0.1217 | No | ||
118 | 23345 | "SYNE1 (spectrin repeat containing, nuclear envelope 1)" | 15075 | -1.620 | 0.1214 | No | ||
119 | 4258 | MGST2 (microsomal glutathione S-transferase 2) | 15356 | -1.835 | 0.1079 | No | ||
120 | 3267 | HRB (HIV-1 Rev binding protein) | 15546 | -2.007 | 0.0990 | No | ||
121 | 221496 | LEMD2 (LEM domain containing 2) | 15923 | -2.395 | 0.0809 | No | ||
122 | 10901 | DHRS4 (dehydrogenase/reductase (SDR family) member 4) | 16015 | -2.513 | 0.0770 | No | ||
123 | 64901 | RANBP17 (RAN binding protein 17) | 16198 | -2.754 | 0.0686 | No | ||
124 | 4056 | LTC4S (leukotriene C4 synthase) | 16400 | -3.062 | 0.0594 | No | ||
125 | 327 | APEH (N-acylaminoacyl-peptide hydrolase) | 16847 | -3.861 | 0.0381 | No | ||
126 | 2781 | "GNAZ (guanine nucleotide binding protein (G protein), alpha z polypeptide)" | 16899 | -3.990 | 0.0365 | No | ||
127 | 64960 | MRPS15 (mitochondrial ribosomal protein S15) | 16917 | -4.026 | 0.0366 | No | ||
128 | 8658 | "TNKS (tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase)" | 16951 | -4.120 | 0.0359 | No | ||
129 | 9123 | "SLC16A3 (solute carrier family 16, member 3 (monocarboxylic acid transporter 4))" | 16969 | -4.170 | 0.0360 | No | ||
130 | 8086 | "AAAS (achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A))" | 16985 | -4.211 | 0.0363 | No | ||
131 | 57540 | PTCHD2 (patched domain containing 2) | 17039 | -4.369 | 0.0347 | No | ||
132 | 4000 | LMNA (lamin A/C) | 17307 | -5.012 | 0.0226 | No | ||
133 | 5002 | "SLC22A18 (solute carrier family 22, member 18)" | 17319 | -5.043 | 0.0232 | No | ||
134 | 9400 | RECQL5 (RecQ protein-like 5) | 17367 | -5.184 | 0.0221 | No | ||
135 | 54884 | "RETSAT (retinol saturase (all-trans-retinol 13,14-reductase))" | 17413 | -5.330 | 0.0211 | No | ||
136 | 7175 | TPR (translocated promoter region (to activated MET oncogene)) | 17416 | -5.336 | 0.0222 | No | ||
137 | 55219 | TMEM57 (transmembrane protein 57) | 17459 | -5.488 | 0.0214 | No | ||
138 | 163183 | C19orf46 (chromosome 19 open reading frame 46) | 17491 | -5.597 | 0.0211 | No | ||
139 | 5664 | PSEN2 (presenilin 2 (Alzheimer disease 4)) | 18005 | -7.937 | -0.0025 | No | ||
140 | 665 | BNIP3L (BCL2/adenovirus E1B 19kDa interacting protein 3-like) | 18121 | -8.583 | -0.0062 | No | ||
141 | 1063 | "CENPF (centromere protein F, 350/400ka (mitosin))" | 18214 | -9.131 | -0.0087 | No | ||
142 | 23001 | WDFY3 (WD repeat and FYVE domain containing 3) | 18326 | -9.779 | -0.0119 | No | ||
143 | 2644 | GCHFR (GTP cyclohydrolase I feedback regulator) | 18349 | -9.921 | -0.0107 | No | ||
144 | 5371 | PML (promyelocytic leukemia) | 18450 | -10.797 | -0.0132 | No | ||
145 | 4088 | SMAD3 (SMAD family member 3) | 18573 | -11.772 | -0.0165 | No | ||
146 | 80351 | "TNKS2 (tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2)" | 18583 | -11.868 | -0.0142 | No | ||
147 | 6396 | SEC13 (SEC13 homolog (S. cerevisiae)) | 18834 | -14.381 | -0.0233 | No | ||
148 | 25777 | UNC84B (unc-84 homolog B (C. elegans)) | 19082 | -18.544 | -0.0312 | No | ||
149 | 311 | ANXA11 (annexin A11) | 19313 | -23.233 | -0.0373 | No | ||
150 | 5663 | PSEN1 (presenilin 1) | 19728 | -38.379 | -0.0490 | No | ||
151 | 9805 | SCRN1 (secernin 1) | 19942 | -56.468 | -0.0465 | No | ||
152 | 6277 | S100A6 (S100 calcium binding protein A6) | 20039 | -67.107 | -0.0358 | No | ||
153 | 28996 | HIPK2 (homeodomain interacting protein kinase 2) | 20050 | -69.317 | -0.0203 | No | ||
154 | 29956 | "LASS2 (LAG1 homolog, ceramide synthase 2)" | 20072 | -72.378 | -0.0046 | No | ||
155 | 4646 | MYO6 (myosin VI) | 20081 | -74.165 | 0.0121 | No |