Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classtreated
GeneSetGO|GO:0006396
Enrichment Score (ES)0.6410106
Normalized Enrichment Score (NES)1.6389427
Nominal p-value0.0
FDR q-value0.033299156
FWER p-Value0.84
Table: GSEA Results Summary



Fig 1: Enrichment plot: GO|GO:0006396   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
11973"EIF4A1 (eukaryotic translation initiation factor 4A, isoform 1)"7376.7250.0278Yes
255651"NOLA2 (nucleolar protein family A, member 2 (H/ACA small nucleolar RNPs))"16288.7670.0489Yes
36432"SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)"38213.9760.0638Yes
43735KARS (lysyl-tRNA synthetase)40210.7150.0795Yes
56635SNRPE (small nuclear ribonucleoprotein polypeptide E)43207.4330.0949Yes
64904YBX1 (Y box binding protein 1)52184.1770.1082Yes
76434"SFRS10 (splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila))"63174.6510.1207Yes
86627SNRPA1 (small nuclear ribonucleoprotein polypeptide A')87156.3830.1312Yes
93187HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1 (H))89155.6030.1428Yes
106636SNRPF (small nuclear ribonucleoprotein polypeptide F)93154.3880.1542Yes
1151602NOP5/NOP58 (nucleolar protein NOP5/NOP58)106143.5740.1643Yes
1210436EMG1 (EMG1 nucleolar protein homolog (S. cerevisiae))107143.2520.1750Yes
139221NOLC1 (nucleolar and coiled-body phosphoprotein 1)110140.4150.1853Yes
143184"HNRNPD (heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa))"114136.8580.1954Yes
156426"SFRS1 (splicing factor, arginine/serine-rich 1)"119133.0170.2051Yes
166209RPS15 (ribosomal protein S15)122130.5170.2148Yes
176231RPS26 (ribosomal protein S26)154119.3130.2221Yes
1810189THOC4 (THO complex 4)158117.0780.2307Yes
194809NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae))162113.7000.2390Yes
2025929GEMIN5 (gem (nuclear organelle) associated protein 5)175109.0630.2466Yes
212521FUS (fusion (involved in t(12;16) in malignant liposarcoma))182107.3020.2543Yes
226634SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa)196103.4340.2613Yes
239939RBM8A (RNA binding motif protein 8A)201102.6130.2688Yes
2487178PNPT1 (polyribonucleotide nucleotidyltransferase 1)22598.2510.2750Yes
2551639"SF3B14 (splicing factor 3B, 14 kDa subunit)"23296.6860.2819Yes
266135RPL11 (ribosomal protein L11)24793.7090.2882Yes
275431"POLR2B (polymerase (RNA) II (DNA directed) polypeptide B, 140kDa)"24893.7050.2951Yes
2892856"IMP4 (IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast))"25592.3090.3017Yes
296427"SFRS2 (splicing factor, arginine/serine-rich 2)"27390.1070.3076Yes
3010907TXNL4A (thioredoxin-like 4A)28388.4840.3137Yes
3110286BCAS2 (breast carcinoma amplified sequence 2)29286.8780.3198Yes
326301SARS (seryl-tRNA synthetase)29486.3830.3262Yes
336428"SFRS3 (splicing factor, arginine/serine-rich 3)"30285.6640.3323Yes
341977EIF4E (eukaryotic translation initiation factor 4E)30684.6410.3384Yes
356201RPS7 (ribosomal protein S7)32183.3590.3439Yes
3679622C16orf33 (chromosome 16 open reading frame 33)33282.2060.3496Yes
372966"GTF2H2 (general transcription factor IIH, polypeptide 2, 44kDa)"33780.9800.3554Yes
3829883"CNOT7 (CCR4-NOT transcription complex, subunit 7)"34580.0290.3610Yes
396632SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa)35278.9030.3666Yes
4010528NOL5A (nucleolar protein 5A (56kDa with KKE/D repeat))35378.8900.3725Yes
416741SSB (Sjogren syndrome antigen B (autoantigen La))39073.8580.3762Yes
4255759WDR12 (WD repeat domain 12)39572.8650.3814Yes
4310492"SYNCRIP (synaptotagmin binding, cytoplasmic RNA interacting protein)"39672.7550.3869Yes
4410419PRMT5 (protein arginine methyltransferase 5)41371.0430.3914Yes
456629SNRPB2 (small nuclear ribonucleoprotein polypeptide B'')42169.8440.3962Yes
465436POLR2G (polymerase (RNA) II (DNA directed) polypeptide G)43967.7680.4004Yes
473192HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A))45066.4000.4049Yes
4823246BOP1 (block of proliferation 1)46265.0150.4092Yes
496217RPS16 (ribosomal protein S16)46664.9090.4139Yes
509987HNRPDL (heterogeneous nuclear ribonucleoprotein D-like)48263.6610.4179Yes
5127339PRPF19 (PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae))49562.3700.4219Yes
527307U2AF1 (U2 small nuclear RNA auxiliary factor 1)50961.5550.4259Yes
5351645PPIL1 (peptidylprolyl isomerase (cyclophilin)-like 1)51061.5150.4304Yes
5410772FUSIP1 (FUS interacting protein (serine/arginine-rich) 1)51161.4190.4350Yes
556633SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)52860.4710.4387Yes
565435POLR2F (polymerase (RNA) II (DNA directed) polypeptide F)53160.3460.4431Yes
57902CCNH (cyclin H)53659.5430.4474Yes
586129RPL7 (ribosomal protein L7)54359.1900.4515Yes
599045RPL14 (ribosomal protein L14)55758.2010.4552Yes
609128PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast))55858.1800.4595Yes
6127258"LSM3 (LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae))"56157.8750.4637Yes
623189HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3 (2H9))56357.7910.4680Yes
6351690"LSM7 (LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae))"56957.4700.4720Yes
6483443"SF3B5 (splicing factor 3b, subunit 5, 10kDa)"60554.8530.4744Yes
6584844PHF5A (PHD finger protein 5A)61654.0600.4779Yes
666229RPS24 (ribosomal protein S24)63253.3400.4811Yes
675441"POLR2L (polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa)"65551.8330.4839Yes
6851095"TRNT1 (tRNA nucleotidyl transferase, CCA-adding, 1)"66451.2050.4873Yes
696628SNRPB (small nuclear ribonucleoprotein polypeptides B and B1)69749.7170.4894Yes
7023450"SF3B3 (splicing factor 3b, subunit 3, 130kDa)"71148.6050.4924Yes
7123435TARDBP (TAR DNA binding protein)74147.5360.4945Yes
721479"CSTF3 (cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa)"76746.2720.4967Yes
7311052"CPSF6 (cleavage and polyadenylation specific factor 6, 68kDa)"77146.1370.5000Yes
7410236HNRNPR (heterogeneous nuclear ribonucleoprotein R)80344.7120.5017Yes
759775"EIF4A3 (eukaryotic translation initiation factor 4A, isoform 3)"82943.5000.5037Yes
762926GRSF1 (G-rich RNA sequence binding factor 1)83643.2760.5067Yes
776421SFPQ (splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated))85842.2920.5088Yes
784686"NCBP1 (nuclear cap binding protein subunit 1, 80kDa)"86042.2660.5119Yes
7910262"SF3B4 (splicing factor 3b, subunit 4, 49kDa)"88241.2580.5139Yes
80283989TSEN54 (tRNA splicing endonuclease 54 homolog (S. cerevisiae))89040.9180.5166Yes
8110625IVNS1ABP (influenza virus NS1A binding protein)89240.7950.5196Yes
824234METTL1 (methyltransferase like 1)91340.2020.5216Yes
836626SNRPA (small nuclear ribonucleoprotein polypeptide A)92040.0410.5243Yes
8479084WDR77 (WD repeat domain 77)95038.4490.5257Yes
857884SLBP (stem-loop binding protein)96637.9850.5278Yes
8679833GEMIN6 (gem (nuclear organelle) associated protein 6)96737.9740.5306Yes
8711157"LSM6 (LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae))"97537.7830.5331Yes
8822916"NCBP2 (nuclear cap binding protein subunit 2, 20kDa)"98637.5280.5354Yes
8923405"DICER1 (dicer 1, ribonuclease type III)"99537.1810.5377Yes
906732SRPK1 (SFRS protein kinase 1)99737.1470.5404Yes
914116"MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))"100936.6190.5426Yes
9223481"PES1 (pescadillo homolog 1, containing BRCT domain (zebrafish))"102536.0270.5446Yes
939295"SFRS11 (splicing factor, arginine/serine-rich 11)"104235.3880.5464Yes
9484967"LSM10 (LSM10, U7 small nuclear RNA associated)"106534.7190.5479Yes
9580324PUS1 (pseudouridylate synthase 1)106634.6890.5505Yes
9651747CROP (cisplatin resistance-associated overexpressed protein)107834.4350.5525Yes
9729896TRA2A (transformer-2 alpha)109233.9950.5544Yes
9888745C6orf153 (chromosome 6 open reading frame 153)110333.6190.5564Yes
998446DUSP11 (dual specificity phosphatase 11 (RNA/RNP complex 1-interacting))110433.6100.5589Yes
10010921"RNPS1 (RNA binding protein S1, serine-rich domain)"110733.5360.5613Yes
10111338U2AF2 (U2 small nuclear RNA auxiliary factor 2)111233.3720.5636Yes
10251119SBDS (Shwachman-Bodian-Diamond syndrome)112033.2040.5657Yes
10356342PPAN (peter pan homolog (Drosophila))114132.6790.5671Yes
10427316"RBMX (RNA binding motif protein, X-linked)"114232.6050.5696Yes
1055438"POLR2I (polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa)"115732.2490.5713Yes
10654888"NSUN2 (NOL1/NOP2/Sun domain family, member 2)"116132.0540.5735Yes
1071207"CLNS1A (chloride channel, nucleotide-sensitive, 1A)"118631.4530.5747Yes
10811168PSIP1 (PC4 and SFRS1 interacting protein 1)118831.4040.5769Yes
10954512EXOSC4 (exosome component 4)118931.2930.5793Yes
1103185HNRNPF (heterogeneous nuclear ribonucleoprotein F)121730.7320.5802Yes
1116606"SMN1 (survival of motor neuron 1, telomeric)"123330.3500.5817Yes
1123188HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2 (H'))126529.7600.5824Yes
1132967"GTF2H3 (general transcription factor IIH, polypeptide 3, 34kDa)"127329.6250.5843Yes
11410199MPHOSPH10 (M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein))128529.3800.5859Yes
1155434"POLR2E (polymerase (RNA) II (DNA directed) polypeptide E, 25kDa)"132828.2680.5859Yes
11651503CWC15 (CWC15 homolog (S. cerevisiae))133928.0130.5875Yes
11751428DDX41 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 41)134527.8800.5893Yes
11855149PAPD1 (PAP associated domain containing 1)134927.8000.5912Yes
11956915EXOSC5 (exosome component 5)135327.7710.5932Yes
1206165RPL35A (ribosomal protein L35a)135727.7020.5951Yes
12110465PPIH (peptidylprolyl isomerase H (cyclophilin H))136427.5840.5968Yes
12227257"LSM1 (LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae))"136927.5240.5987Yes
12329960FTSJ2 (FtsJ homolog 2 (E. coli))138527.2900.6000Yes
12451493C22orf28 (chromosome 22 open reading frame 28)139027.1850.6018Yes
1255393EXOSC9 (exosome component 9)139127.1610.6038Yes
12651755"CRKRS (Cdc2-related kinase, arginine/serine-rich)"139327.1470.6058Yes
12710657"KHDRBS1 (KH domain containing, RNA binding, signal transduction associated 1)"139627.0530.6077Yes
12811218DDX20 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 20)142026.7190.6085Yes
12958517RBM25 (RNA binding motif protein 25)142626.5940.6103Yes
13057508INTS2 (integrator complex subunit 2)144926.2160.6111Yes
1316100RP9 (retinitis pigmentosa 9 (autosomal dominant))146626.0440.6123Yes
13223517SKIV2L2 (superkiller viralicidic activity 2-like 2 (S. cerevisiae))152924.8940.6110Yes
13326747NUFIP1 (nuclear fragile X mental retardation protein interacting protein 1)153124.8650.6128Yes
1348575"PRKRA (protein kinase, interferon-inducible double stranded RNA dependent activator)"157424.2820.6125Yes
13550628GEMIN4 (gem (nuclear organelle) associated protein 4)158924.0860.6136Yes
1368243SMC1A (structural maintenance of chromosomes 1A)159723.9870.6150Yes
137351APP (amyloid beta (A4) precursor protein)160223.9150.6166Yes
1387072TIA1 (TIA1 cytotoxic granule-associated RNA binding protein)164623.2600.6162Yes
13981605URM1 (ubiquitin related modifier 1 homolog (S. cerevisiae))165723.1360.6174Yes
14051808"RNUXA (RNA U, small nuclear RNA export adaptor (phosphorylation regulated))"166023.1000.6191Yes
1418602NOL14 (nucleolar protein 14)168622.5950.6195Yes
14210785WDR4 (WD repeat domain 4)173221.9740.6189Yes
1435433POLR2D (polymerase (RNA) II (DNA directed) polypeptide D)174721.7110.6198Yes
1441653DDX1 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 1)175421.6030.6211Yes
145580BARD1 (BRCA1 associated RING domain 1)175621.5560.6226Yes
1465432"POLR2C (polymerase (RNA) II (DNA directed) polypeptide C, 33kDa)"177221.3890.6235Yes
14765109UPF3B (UPF3 regulator of nonsense transcripts homolog B (yeast))177821.3410.6248Yes
1489125RQCD1 (RCD1 required for cell differentiation1 homolog (S. pombe))180520.9710.6251Yes
1497538"ZFP36 (zinc finger protein 36, C3H type, homolog (mouse))"183620.6650.6251Yes
1506631SNRPC (small nuclear ribonucleoprotein polypeptide C)187120.2400.6249Yes
15123536"ADAT1 (adenosine deaminase, tRNA-specific 1)"187420.1960.6263Yes
15255656INTS8 (integrator complex subunit 8)188520.1240.6273Yes
15385437ZCRB1 (zinc finger CCHC-type and RNA binding motif 1)190819.8670.6277Yes
15480746TSEN2 (tRNA splicing endonuclease 2 homolog (S. cerevisiae))191319.8420.6290Yes
155154007C6orf151 (chromosome 6 open reading frame 151)192019.7740.6302Yes
1565073PARN (poly(A)-specific ribonuclease (deadenylation nuclease))195819.3490.6297Yes
1576429"SFRS4 (splicing factor, arginine/serine-rich 4)"197019.1040.6306Yes
15816AARS (alanyl-tRNA synthetase)202718.5290.6292Yes
15951319RSRC1 (arginine/serine-rich coiled-coil 1)204318.4080.6298Yes
1602963"GTF2F2 (general transcription factor IIF, polypeptide 2, 30kDa)"205618.2640.6306Yes
16179760GEMIN7 (gem (nuclear organelle) associated protein 7)205718.2560.6319Yes
16251010EXOSC3 (exosome component 3)207318.0990.6325Yes
16351362CDC40 (cell division cycle 40 homolog (S. cerevisiae))209817.9420.6327Yes
1646431"SFRS6 (splicing factor, arginine/serine-rich 6)"211317.8000.6333Yes
1659584RBM39 (RNA binding motif protein 39)212017.7550.6343Yes
1669360PPIG (peptidylprolyl isomerase G (cyclophilin G))215417.4500.6340Yes
16710667"FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial)"215817.4460.6351Yes
1686625SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen))215917.4430.6364Yes
16910285SMNDC1 (survival motor neuron domain containing 1)221017.0430.6352Yes
1705356"PLRG1 (pleiotropic regulator 1 (PRL1 homolog, Arabidopsis))"223916.7590.6350Yes
1716895TARBP2 (TAR (HIV-1) RNA binding protein 2)225116.6370.6357Yes
17227340"UTP20 (UTP20, small subunit (SSU) processome component, homolog (yeast))"225716.5250.6367Yes
1731660DHX9 (DEAH (Asp-Glu-Ala-His) box polypeptide 9)225816.5210.6379Yes
1745515"PPP2CA (protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform)"226416.4270.6389Yes
17554974THG1L (tRNA-histidine guanylyltransferase 1-like (S. cerevisiae))226616.4100.6401Yes
17624144TFIP11 (tuftelin interacting protein 11)227816.2070.6407Yes
1778761"PABPC4 (poly(A) binding protein, cytoplasmic 4 (inducible form))"229716.0610.6410Yes
1789410WDR57 (WD repeat domain 57 (U5 snRNP specific))243414.8490.6353No
17910283SDCCAG10 (serologically defined colon cancer antigen 10)245414.7280.6354No
1808570KHSRP (KH-type splicing regulatory protein)246014.7000.6363No
18123210JMJD6 (jumonji domain containing 6)248714.4200.6360No
18280004RBM35B (RNA binding motif protein 35B)250514.2230.6363No
1836832"SUPV3L1 (suppressor of var1, 3-like 1 (S. cerevisiae))"251314.1830.6370No
18465123INTS3 (integrator complex subunit 3)255013.8830.6362No
1855093PCBP1 (poly(rC) binding protein 1)260613.4290.6344No
18610200MPHOSPH6 (M-phase phosphoprotein 6)262813.2310.6344No
187348180C16orf84 (chromosome 16 open reading frame 84)264313.1270.6346No
18880789INTS5 (integrator complex subunit 5)264513.1140.6356No
1899416DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)265313.0870.6362No
19055174INTS10 (integrator complex subunit 10)267312.9980.6362No
19155749CCAR1 (cell division cycle and apoptosis regulator 1)268412.9530.6367No
19229894"CPSF1 (cleavage and polyadenylation specific factor 1, 160kDa)"272012.7110.6359No
193636BICD1 (bicaudal D homolog 1 (Drosophila))279812.2120.6329No
1948220DGCR14 (DiGeorge syndrome critical region gene 14)280812.1670.6334No
19579050NOC4L (nucleolar complex associated 4 homolog (S. cerevisiae))284811.9620.6323No
19651163DBR1 (debranching enzyme homolog 1 (S. cerevisiae))285411.9380.6329No
19723398PPWD1 (peptidylprolyl isomerase domain and WD repeat containing 1)287211.8290.6330No
19810946"SF3A3 (splicing factor 3a, subunit 3, 60kDa)"290611.6230.6322No
1994849"CNOT3 (CCR4-NOT transcription complex, subunit 3)"291511.5390.6326No
2005936RBM4 (RNA binding motif protein 4)294111.3800.6322No
20179691QTRTD1 (queuine tRNA-ribosyltransferase domain containing 1)298311.1000.6310No
2022483FRG1 (FSHD region gene 1)310710.3980.6256No
2039984THOC1 (THO complex 1)312310.3550.6256No
204162989DEDD2 (death effector domain containing 2)313210.2760.6260No
20527304MOCS3 (molybdenum cofactor synthesis 3)313510.2570.6266No
20657819"LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))"313610.2510.6274No
20711051NUDT21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21)313910.2330.6281No
20865083NOL6 (nucleolar protein family 6 (RNA-associated))31929.9990.6262No
2094087SMAD2 (SMAD family member 2)32089.9120.6262No
21011030RBPMS (RNA binding protein with multiple splicing)32329.7800.6258No
21179707NOL9 (nucleolar protein 9)32849.6050.6239No
21251692"CPSF3 (cleavage and polyadenylation specific factor 3, 73kDa)"32999.5330.6239No
21396764TGS1 (trimethylguanosine synthase homolog (S. cerevisiae))33889.2000.6202No
2142968"GTF2H4 (general transcription factor IIH, polypeptide 4, 52kDa)"34169.1030.6195No
21510450PPIE (peptidylprolyl isomerase E (cyclophilin E))34259.0670.6198No
2166733SRPK2 (SFRS protein kinase 2)34768.8310.6179No
21790459THEX1 (three prime histone mRNA exonuclease 1)34818.8030.6184No
21879869"FLJ12529 (pre-mRNA cleavage factor I, 59 kDa subunit)"34828.7990.6190No
21910250SRRM1 (serine/arginine repetitive matrix 1)34848.7950.6196No
2206433"SFRS8 (splicing factor, arginine/serine-rich 8 (suppressor-of-white-apricot homolog, Drosophila))"35748.4570.6158No
2214331"MNAT1 (menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis))"35838.4170.6160No
22210291"SF3A1 (splicing factor 3a, subunit 1, 120kDa)"35978.3600.6160No
2239343EFTUD2 (elongation factor Tu GTP binding domain containing 2)36178.2800.6157No
22411193WBP4 (WW domain binding protein 4 (formin binding protein 21))36208.2670.6162No
2255430"POLR2A (polymerase (RNA) II (DNA directed) polypeptide A, 220kDa)"36268.2310.6165No
22655571C2orf29 (chromosome 2 open reading frame 29)36568.1610.6157No
2276829SUPT5H (suppressor of Ty 5 homolog (S. cerevisiae))36987.9420.6142No
2284154MBNL1 (muscleblind-like (Drosophila))37167.8770.6140No
2299716AQR (aquarius homolog (mouse))37227.8600.6143No
23022894DIS3 (DIS3 mitotic control homolog (S. cerevisiae))37837.5770.6118No
23110914PAPOLA (poly(A) polymerase alpha)38757.1870.6078No
2329129PRPF3 (PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae))39117.0550.6066No
23385456"TNKS1BP1 (tankyrase 1 binding protein 1, 182kDa)"39836.8580.6035No
2343191HNRNPL (heterogeneous nuclear ribonucleoprotein L)40066.7660.6029No
23555544RBM38 (RNA binding motif protein 38)40366.6860.6020No
23651329ARL6IP4 (ADP-ribosylation-like factor 6 interacting protein 4)40406.6740.6023No
2375937"RBMS1 (RNA binding motif, single stranded interacting protein 1)"40616.5800.6018No
23855756INTS9 (integrator complex subunit 9)41626.2160.5972No
2398487SIP1 (survival of motor neuron protein interacting protein 1)42336.0090.5942No
24010438C1D (nuclear DNA-binding protein)43265.7000.5900No
24157461ISY1 (ISY1 splicing factor homolog (S. cerevisiae))43855.5050.5875No
2426651SON (SON DNA binding protein)43955.4840.5874No
24384081CCDC55 (coiled-coil domain containing 55)44055.4720.5874No
24425888ZNF473 (zinc finger protein 473)44095.4670.5876No
24525904"CNOT10 (CCR4-NOT transcription complex, subunit 10)"44175.4550.5877No
24679753SNIP1 (Smad nuclear interacting protein 1)44345.4150.5873No
24784292MORG1 (mitogen-activated protein kinase organizer 1)44365.4090.5877No
24826512INTS6 (integrator complex subunit 6)44395.4040.5880No
24958509C19orf29 (chromosome 19 open reading frame 29)44435.3910.5882No
25057117INTS12 (integrator complex subunit 12)45715.0630.5822No
2515437POLR2H (polymerase (RNA) II (DNA directed) polypeptide H)45965.0000.5814No
2529092SART1 (squamous cell carcinoma antigen recognized by T cells)47074.7030.5762No
253988CDC5L (CDC5 cell division cycle 5-like (S. pombe))49154.2040.5661No
25454487DGCR8 (DiGeorge syndrome critical region gene 8)49314.1660.5657No
25557472"CNOT6 (CCR4-NOT transcription complex, subunit 6)"50343.9550.5608No
25655696RBM22 (RNA binding motif protein 22)50373.9490.5610No
25722938SNW1 (SNW domain containing 1)50773.8810.5594No
2582068"ERCC2 (excision repair cross-complementing rodent repair deficiency, complementation group 2)"51593.7020.5556No
25910421CD2BP2 (CD2 (cytoplasmic tail) binding protein 2)53573.3070.5459No
26081890QTRT1 (queuine tRNA-ribosyltransferase 1)54383.1760.5421No
26125896INTS7 (integrator complex subunit 7)54523.1620.5417No
2621478"CSTF2 (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa)"54943.0740.5399No
26327161"EIF2C2 (eukaryotic translation initiation factor 2C, 2)"55393.0050.5379No
26457703KIAA1604 (KIAA1604 protein)55702.9610.5366No
26555109AGGF1 (angiogenic factor with G patch and FHA domains 1)57522.6820.5277No
26610978"CLP1 (CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae))"57832.6370.5264No
2672071"ERCC3 (excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing))"59442.4390.5186No
26823543RBM9 (RNA binding motif protein 9)59802.3990.5170No
269134353"LSM11 (LSM11, U7 small nuclear RNA associated)"60242.3460.5150No
2702965"GTF2H1 (general transcription factor IIH, polypeptide 1, 62kDa)"61552.1630.5086No
2715394EXOSC10 (exosome component 10)62762.0230.5028No
2725440"POLR2K (polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa)"63211.9700.5007No
2732962"GTF2F1 (general transcription factor IIF, polypeptide 1, 74kDa)"63881.8940.4975No
274652147"LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)"65321.7500.4905No
27560625DHX35 (DEAH (Asp-Glu-Ala-His) box polypeptide 35)66641.6200.4840No
27655687TRMU (tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase)66831.6070.4832No
27757794SF4 (splicing factor 4)66911.5970.4830No
2786638SNRPN (small nuclear ribonucleoprotein polypeptide N)67671.5380.4793No
27954802TRIT1 (tRNA isopentenyltransferase 1)70321.3240.4662No
28027254"CSDC2 (cold shock domain containing C2, RNA binding)"72441.1640.4557No
281130951C2orf65 (chromosome 2 open reading frame 65)72911.1390.4534No
28210180RBM6 (RNA binding motif protein 6)73001.1330.4531No
28310569SLU7 (SLU7 splicing factor homolog (S. cerevisiae))74241.0510.4470No
28410658"CUGBP1 (CUG triplet repeat, RNA binding protein 1)"74271.0480.4470No
28523144ZC3H3 (zinc finger CCCH-type containing 3)75160.9860.4426No
28610713USP39 (ubiquitin specific peptidase 39)78090.8320.4280No
28710949HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0)79900.7410.4190No
2887490WT1 (Wilms tumor 1)85590.5260.3906No
2894086SMAD1 (SMAD family member 1)87060.4790.3833No
2906125RPL5 (ribosomal protein L5)87410.4650.3816No
2915940"RBMY1A1 (RNA binding motif protein, Y-linked, family 1, member A1)"88360.4320.3769No
2927536SF1 (splicing factor 1)92850.3090.3544No
2939169"SFRS2IP (splicing factor, arginine/serine-rich 2, interacting protein)"95340.2470.3420No
29410922FASTK (Fas-activated serine/threonine kinase)95540.2400.3410No
2958106"PABPN1 (poly(A) binding protein, nuclear 1)"98660.1670.3254No
296389421LIN28B (lin-28 homolog B (C. elegans))99430.1480.3216No
29710659"CUGBP2 (CUG triplet repeat, RNA binding protein 2)"101460.0980.3115No
2985939"RBMS2 (RNA binding motif, single stranded interacting protein 2)"103280.0550.3024No
29910891"PPARGC1A (peroxisome proliferator-activated receptor gamma, coactivator 1 alpha)"10683-0.0220.2846No
300339"APOBEC1 (apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1)"10946-0.0820.2714No
30179727LIN28 (lin-28 homolog (C. elegans))11232-0.1500.2571No
30260677"BRUNOL6 (bruno-like 6, RNA binding protein (Drosophila))"12006-0.3240.2183No
303129450C2orf60 (chromosome 2 open reading frame 60)12356-0.4160.2008No
3041996"ELAVL4 (ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D))"12623-0.4900.1875No
30510212DDX39 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 39)12643-0.4970.1866No
30679039DDX54 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 54)12713-0.5170.1832No
307135295SRrp35 (serine-arginine repressor protein (35 kDa))12746-0.5270.1816No
30884687"PPP1R9B (protein phosphatase 1, regulatory (inhibitor) subunit 9B)"13293-0.6990.1542No
30956853"BRUNOL4 (bruno-like 4, RNA binding protein (Drosophila))"13321-0.7110.1529No
3103181HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1)13361-0.7270.1510No
31184530KIAA1853 (KIAA1853)13416-0.7490.1483No
3124857NOVA1 (neuro-oncological ventral antigen 1)13618-0.8230.1383No
313246175"CNOT6L (CCR4-NOT transcription complex, subunit 6-like)"13657-0.8350.1365No
31422944"KIN (KIN, antigenic determinant of recA protein homolog (mouse))"14422-1.1930.0982No
3159785DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)14908-1.4910.0739No
3162334"AFF2 (AF4/FMR2 family, member 2)"14921-1.5020.0734No
31753981"CPSF2 (cleavage and polyadenylation specific factor 2, 100kDa)"15120-1.6540.0636No
31822803XRN2 (5'-3' exoribonuclease 2)15213-1.7320.0591No
31956949XAB2 (XPA binding protein 2)15293-1.7870.0553No
32091801"ALKBH8 (alkB, alkylation repair homolog 8 (E. coli))"15416-1.8850.0493No
32179670"ZCCHC6 (zinc finger, CCHC domain containing 6)"15419-1.8870.0493No
3228175"SF3A2 (splicing factor 3a, subunit 2, 66kDa)"15425-1.8930.0492No
32355124PIWIL2 (piwi-like 2 (Drosophila))15626-2.0710.0393No
3246038"RNASE4 (ribonuclease, RNase A family, 4)"15670-2.1150.0373No
32522913"RALY (RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)))"15765-2.2250.0328No
32623070FTSJD2 (FtsJ methyltransferase domain containing 2)15816-2.2700.0304No
32723451"SF3B1 (splicing factor 3b, subunit 1, 155kDa)"15886-2.3480.0271No
32851691"LSM8 (LSM8 homolog, U6 small nuclear RNA associated (S. cerevisiae))"15943-2.4250.0245No
3298899PRPF4B (PRP4 pre-mRNA processing factor 4 homolog B (yeast))16019-2.5210.0209No
33055599"RNPC3 (RNA-binding region (RNP1, RRM) containing 3)"16088-2.6240.0177No
33110081PDCD7 (programmed cell death 7)16146-2.6940.0150No
3325303"PIN4 (protein (peptidylprolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin))"16171-2.7210.0140No
3336202RPS8 (ribosomal protein S8)16179-2.7280.0139No
33454960GEMIN8 (gem (nuclear organelle) associated protein 8)16351-2.9920.0055No
33554496PRMT7 (protein arginine methyltransferase 7)16473-3.176-0.0003No
3368732RNGTT (RNA guanylyltransferase and 5'-phosphatase)16653-3.499-0.0090No
33726121PRPF31 (PRP31 pre-mRNA processing factor 31 homolog (S. cerevisiae))16741-3.692-0.0131No
338167153PAPD4 (PAP associated domain containing 4)16804-3.786-0.0160No
33955796MBNL3 (muscleblind-like 3 (Drosophila))16864-3.915-0.0186No
3408731RNMT (RNA (guanine-7-) methyltransferase)16887-3.967-0.0195No
34123318"ZCCHC11 (zinc finger, CCHC domain containing 11)"16916-4.026-0.0206No
34292105INTS4 (integrator complex subunit 4)16949-4.118-0.0219No
34364852"TUT1 (terminal uridylyl transferase 1, U6 snRNA-specific)"16954-4.129-0.0218No
34410073SNUPN (snurportin 1)16960-4.145-0.0217No
3458926SNURF (SNRPN upstream reading frame)16996-4.251-0.0231No
34629890RBM15B (RNA binding motif protein 15B)17097-4.517-0.0278No
3471659DHX8 (DEAH (Asp-Glu-Ala-His) box polypeptide 8)17140-4.610-0.0296No
34811189TNRC4 (trinucleotide repeat containing 4)17169-4.667-0.0307No
349255967PAN3 (PAN3 polyA specific ribonuclease subunit homolog (S. cerevisiae))17263-4.886-0.0350No
35026173INTS1 (integrator complex subunit 1)17371-5.197-0.0399No
35111100HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U-like 1)17403-5.300-0.0411No
3528405SPOP (speckle-type POZ protein)17566-5.865-0.0488No
353104"ADARB1 (adenosine deaminase, RNA-specific, B1 (RED1 homolog rat))"17599-6.004-0.0500No
3549924PAN2 (PAN2 polyA specific ribonuclease subunit homolog (S. cerevisiae))17665-6.269-0.0528No
35555094GPATCH1 (G patch domain containing 1)17675-6.324-0.0527No
35610181RBM5 (RNA binding motif protein 5)17795-6.897-0.0582No
35710594PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae))17881-7.246-0.0619No
35855954"ZMAT5 (zinc finger, matrin type 5)"17918-7.477-0.0632No
3594670HNRNPM (heterogeneous nuclear ribonucleoprotein M)17936-7.587-0.0635No
36054853WDR55 (WD repeat domain 55)18030-8.043-0.0675No
36123064SETX (senataxin)18052-8.159-0.0680No
3621477"CSTF1 (cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa)"18059-8.190-0.0677No
36364121RRAGC (Ras-related GTP binding C)18123-8.605-0.0702No
3645439"POLR2J (polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa)"18134-8.661-0.0701No
3653178HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1)18139-8.691-0.0696No
3668233"ZRSR2 (zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2)"18162-8.812-0.0701No
3674850"CNOT4 (CCR4-NOT transcription complex, subunit 4)"18305-9.643-0.0765No
36892906HNRPLL (heterogeneous nuclear ribonucleoprotein L-like)18417-10.515-0.0813No
3693190HNRNPK (heterogeneous nuclear ribonucleoprotein K)18557-11.620-0.0874No
37023524SRRM2 (serine/arginine repetitive matrix 2)18558-11.635-0.0865No
3714088SMAD3 (SMAD family member 3)18573-11.772-0.0863No
37255596"ZCCHC8 (zinc finger, CCHC domain containing 8)"18579-11.840-0.0857No
37324148PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae))18644-12.510-0.0880No
37422826"DNAJC8 (DnaJ (Hsp40) homolog, subfamily C, member 8)"18654-12.595-0.0875No
37525949"SYF2 (SYF2 homolog, RNA splicing factor (S. cerevisiae))"18657-12.624-0.0867No
3766310ATXN1 (ataxin 1)18704-13.104-0.0880No
37711066U1SNRNPBP (U11/U12 snRNP 35K)18778-13.831-0.0906No
37827332ZNF638 (zinc finger protein 638)18804-14.070-0.0908No
37953938PPIL3 (peptidylprolyl isomerase (cyclophilin)-like 3)18919-15.513-0.0954No
38051340CRNKL1 (crooked neck pre-mRNA splicing factor-like 1 (Drosophila))18946-16.005-0.0955No
3819337"CNOT8 (CCR4-NOT transcription complex, subunit 8)"18952-16.069-0.0946No
3828683"SFRS9 (splicing factor, arginine/serine-rich 9)"18964-16.250-0.0939No
38310992"SF3B2 (splicing factor 3b, subunit 2, 145kDa)"19037-17.576-0.0962No
3841655DDX5 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 5)19052-17.892-0.0956No
3856637SNRPG (small nuclear ribonucleoprotein polypeptide G)19107-18.986-0.0969No
3866227RPS21 (ribosomal protein S21)19135-19.508-0.0968No
38710605PAIP1 (poly(A) binding protein interacting protein 1)19140-19.575-0.0955No
3888621CDC2L5 (cell division cycle 2-like 5 (cholinesterase-related cell division controller))19181-20.200-0.0960No
3895725PTBP1 (polypyrimidine tract binding protein 1)19275-22.290-0.0990No
3903921RPSA (ribosomal protein SA)19315-23.344-0.0993No
39151585"PCF11 (PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae))"19324-23.584-0.0979No
3927919BAT1 (HLA-B associated transcript 1)19345-24.118-0.0971No
3934343"MOV10 (Mov10, Moloney leukemia virus 10, homolog (mouse))"19381-25.088-0.0970No
3941981"EIF4G1 (eukaryotic translation initiation factor 4 gamma, 1)"19404-25.689-0.0962No
39551593ARS2 (arsenate resistance protein 2)19417-26.154-0.0948No
39610150MBNL2 (muscleblind-like 2 (Drosophila))19456-27.111-0.0947No
3974848"CNOT2 (CCR4-NOT transcription complex, subunit 2)"19536-29.484-0.0965No
39823020ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1)19614-32.261-0.0979No
3995935"RBM3 (RNA binding motif (RNP1, RRM) protein 3)"19692-36.478-0.0991No
4001022CDK7 (cyclin-dependent kinase 7)19757-39.600-0.0993No
401220988HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)19789-41.609-0.0978No
4023183HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2))19797-42.022-0.0950No
4035518"PPP2R1A (protein phosphatase 2 (formerly 2A), regulatory subunit A , alpha isoform)"19806-42.722-0.0922No
4046207RPS13 (ribosomal protein S13)19847-45.786-0.0908No
4056430"SFRS5 (splicing factor, arginine/serine-rich 5)"19923-53.636-0.0906No
4061975EIF4B (eukaryotic translation initiation factor 4B)19927-54.393-0.0867No
4071665DHX15 (DEAH (Asp-Glu-Ala-His) box polypeptide 15)19932-54.709-0.0828No
40823019"CNOT1 (CCR4-NOT transcription complex, subunit 1)"19973-59.113-0.0804No
4097832"BTG2 (BTG family, member 2)"20013-63.562-0.0776No
41026986"PABPC1 (poly(A) binding protein, cytoplasmic 1)"20057-70.422-0.0745No
4115094PCBP2 (poly(rC) binding protein 2)20076-73.183-0.0700No
4126194RPS6 (ribosomal protein S6)20091-76.100-0.0650No
4136208RPS14 (ribosomal protein S14)20109-82.199-0.0597No
4141974"EIF4A2 (eukaryotic translation initiation factor 4A, isoform 2)"20136-89.935-0.0543No
41554845RBM35A (RNA binding motif protein 35A)20137-90.088-0.0476No
41610521DDX17 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 17)20160-97.760-0.0414No
4176234RPS28 (ribosomal protein S28)20178-103.480-0.0345No
4185411"PNN (pinin, desmosome associated protein)"20269-172.990-0.0262No
4196218RPS17 (ribosomal protein S17)20283-190.183-0.0126No
4206223RPS19 (ribosomal protein S19)20288-196.6800.0019No
Table: GSEA details [plain text format]



Fig 2: GO|GO:0006396   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GO|GO:0006396: Random ES distribution   
Gene set null distribution of ES for GO|GO:0006396