Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classtreated
GeneSetREACTOME|REACT_1675.1
Enrichment Score (ES)0.7272599
Normalized Enrichment Score (NES)1.7164828
Nominal p-value0.0
FDR q-value0.009526097
FWER p-Value0.104
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME|REACT_1675.1   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
16432"SFRS7 (splicing factor, arginine/serine-rich 7, 35kDa)"38213.9760.0355Yes
26635SNRPE (small nuclear ribonucleoprotein polypeptide E)43207.4330.0716Yes
34904YBX1 (Y box binding protein 1)52184.1770.1034Yes
46627SNRPA1 (small nuclear ribonucleoprotein polypeptide A')87156.3830.1290Yes
53187HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1 (H))89155.6030.1562Yes
66636SNRPF (small nuclear ribonucleoprotein polypeptide F)93154.3880.1830Yes
73184"HNRNPD (heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa))"114136.8580.2060Yes
86426"SFRS1 (splicing factor, arginine/serine-rich 1)"119133.0170.2290Yes
910189THOC4 (THO complex 4)158117.0780.2476Yes
104809NHP2L1 (NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae))162113.7000.2673Yes
112521FUS (fusion (involved in t(12;16) in malignant liposarcoma))182107.3020.2852Yes
126634SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide 18kDa)196103.4340.3026Yes
139939RBM8A (RNA binding motif protein 8A)201102.6130.3203Yes
1451639"SF3B14 (splicing factor 3B, 14 kDa subunit)"23296.6860.3358Yes
155431"POLR2B (polymerase (RNA) II (DNA directed) polypeptide B, 140kDa)"24893.7050.3514Yes
166427"SFRS2 (splicing factor, arginine/serine-rich 2)"27390.1070.3660Yes
1757122NUP107 (nucleoporin 107kDa)27689.5880.3815Yes
1810907TXNL4A (thioredoxin-like 4A)28388.4840.3967Yes
196428"SFRS3 (splicing factor, arginine/serine-rich 3)"30285.6640.4108Yes
201977EIF4E (eukaryotic translation initiation factor 4E)30684.6410.4254Yes
218480RAE1 (RAE1 RNA export 1 homolog (S. pombe))32283.3120.4392Yes
222966"GTF2H2 (general transcription factor IIH, polypeptide 2, 44kDa)"33780.9800.4527Yes
236632SNRPD1 (small nuclear ribonucleoprotein D1 polypeptide 16kDa)35278.9030.4658Yes
246629SNRPB2 (small nuclear ribonucleoprotein polypeptide B'')42169.8440.4746Yes
255436POLR2G (polymerase (RNA) II (DNA directed) polypeptide G)43967.7680.4856Yes
263192HNRNPU (heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A))45066.4000.4968Yes
27129401NUP35 (nucleoporin 35kDa)50261.8730.5051Yes
287307U2AF1 (U2 small nuclear RNA auxiliary factor 1)50961.5550.5155Yes
296633SNRPD2 (small nuclear ribonucleoprotein D2 polypeptide 16.5kDa)52860.4710.5252Yes
305435POLR2F (polymerase (RNA) II (DNA directed) polypeptide F)53160.3460.5356Yes
31902CCNH (cyclin H)53659.5430.5459Yes
329128PRPF4 (PRP4 pre-mRNA processing factor 4 homolog (yeast))55858.1800.5550Yes
3383443"SF3B5 (splicing factor 3b, subunit 5, 10kDa)"60554.8530.5623Yes
3484844PHF5A (PHD finger protein 5A)61654.0600.5712Yes
355441"POLR2L (polymerase (RNA) II (DNA directed) polypeptide L, 7.6kDa)"65551.8330.5784Yes
366628SNRPB (small nuclear ribonucleoprotein polypeptides B and B1)69749.7170.5851Yes
3723450"SF3B3 (splicing factor 3b, subunit 3, 130kDa)"71148.6050.5929Yes
381479"CSTF3 (cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kDa)"76746.2720.5983Yes
3979023NUP37 (nucleoporin 37kDa)77046.1890.6063Yes
4010236HNRNPR (heterogeneous nuclear ribonucleoprotein R)80344.7120.6125Yes
414686"NCBP1 (nuclear cap binding protein subunit 1, 80kDa)"86042.2660.6171Yes
4210262"SF3B4 (splicing factor 3b, subunit 4, 49kDa)"88241.2580.6233Yes
436626SNRPA (small nuclear ribonucleoprotein polypeptide A)92040.0410.6285Yes
449972NUP153 (nucleoporin 153kDa)92439.6720.6352Yes
457884SLBP (stem-loop binding protein)96637.9850.6399Yes
4623636NUP62 (nucleoporin 62kDa)98037.6920.6458Yes
4722916"NCBP2 (nuclear cap binding protein subunit 2, 20kDa)"98637.5280.6521Yes
484116"MAGOH (mago-nashi homolog, proliferation-associated (Drosophila))"100936.6190.6574Yes
4956339METTL3 (methyltransferase like 3)101236.5450.6637Yes
509295"SFRS11 (splicing factor, arginine/serine-rich 11)"104235.3880.6685Yes
5184967"LSM10 (LSM10, U7 small nuclear RNA associated)"106534.7190.6734Yes
5210921"RNPS1 (RNA binding protein S1, serine-rich domain)"110733.5360.6773Yes
5311338U2AF2 (U2 small nuclear RNA auxiliary factor 2)111233.3720.6829Yes
5410762NUP50 (nucleoporin 50kDa)113232.8600.6877Yes
5527316"RBMX (RNA binding motif protein, X-linked)"114232.6050.6930Yes
5623165NUP205 (nucleoporin 205kDa)114332.6050.6987Yes
574927NUP88 (nucleoporin 88kDa)114932.4550.7041Yes
585438"POLR2I (polymerase (RNA) II (DNA directed) polypeptide I, 14.5kDa)"115732.2490.7094Yes
593185HNRNPF (heterogeneous nuclear ribonucleoprotein F)121730.7320.7118Yes
603188HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2 (H'))126529.7600.7147Yes
612967"GTF2H3 (general transcription factor IIH, polypeptide 3, 34kDa)"127329.6250.7195Yes
625434"POLR2E (polymerase (RNA) II (DNA directed) polypeptide E, 25kDa)"132828.2680.7218Yes
638243SMC1A (structural maintenance of chromosomes 1A)159723.9870.7127Yes
6453371NUP54 (nucleoporin 54kDa)160423.8590.7166Yes
659631NUP155 (nucleoporin 155kDa)164123.3600.7189Yes
665433POLR2D (polymerase (RNA) II (DNA directed) polypeptide D)174721.7110.7175Yes
675432"POLR2C (polymerase (RNA) II (DNA directed) polypeptide C, 33kDa)"177221.3890.7200Yes
6865109UPF3B (UPF3 regulator of nonsense transcripts homolog B (yeast))177821.3410.7235Yes
6923279NUP160 (nucleoporin 160kDa)180420.9880.7259Yes
706429"SFRS4 (splicing factor, arginine/serine-rich 4)"197019.1040.7211Yes
712963"GTF2F2 (general transcription factor IIF, polypeptide 2, 30kDa)"205618.2640.7201Yes
7251362CDC40 (cell division cycle 40 homolog (S. cerevisiae))209817.9420.7212Yes
736431"SFRS6 (splicing factor, arginine/serine-rich 6)"211317.8000.7236Yes
746625SNRP70 (small nuclear ribonucleoprotein 70kDa polypeptide (RNP antigen))215917.4430.7244Yes
755903RANBP2 (RAN binding protein 2)216417.3990.7273Yes
761660DHX9 (DEAH (Asp-Glu-Ala-His) box polypeptide 9)225816.5210.7255No
779410WDR57 (WD repeat domain 57 (U5 snRNP specific))243414.8490.7195No
785093PCBP1 (poly(rC) binding protein 1)260613.4290.7133No
7923511NUP188 (nucleoporin 188kDa)262313.2560.7149No
809416DDX23 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 23)265313.0870.7157No
8155749CCAR1 (cell division cycle and apoptosis regulator 1)268412.9530.7165No
829688NUP93 (nucleoporin 93kDa)270912.8140.7175No
8329894"CPSF1 (cleavage and polyadenylation specific factor 1, 160kDa)"272012.7110.7193No
8455746NUP133 (nucleoporin 133kDa)278712.2810.7181No
8510482NXF1 (nuclear RNA export factor 1)281112.1450.7191No
8610946"SF3A3 (splicing factor 3a, subunit 3, 60kDa)"290611.6230.7165No
8757819"LSM2 (LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae))"313610.2510.7069No
8811051NUDT21 (nudix (nucleoside diphosphate linked moiety X)-type motif 21)313910.2330.7086No
8979902NUP85 (nucleoporin 85kDa)32899.5860.7029No
9051692"CPSF3 (cleavage and polyadenylation specific factor 3, 73kDa)"32999.5330.7041No
91348995NUP43 (nucleoporin 43kDa)33559.3500.7030No
9223225NUP210 (nucleoporin 210kDa)33969.1690.7027No
932968"GTF2H4 (general transcription factor IIH, polypeptide 4, 52kDa)"34169.1030.7033No
9479869"FLJ12529 (pre-mRNA cleavage factor I, 59 kDa subunit)"34828.7990.7016No
9510250SRRM1 (serine/arginine repetitive matrix 1)34848.7950.7031No
964331"MNAT1 (menage a trois homolog 1, cyclin H assembly factor (Xenopus laevis))"35838.4170.6997No
9710291"SF3A1 (splicing factor 3a, subunit 1, 120kDa)"35978.3600.7005No
989343EFTUD2 (elongation factor Tu GTP binding domain containing 2)36178.2800.7011No
995430"POLR2A (polymerase (RNA) II (DNA directed) polypeptide A, 220kDa)"36268.2310.7021No
10010914PAPOLA (poly(A) polymerase alpha)38757.1870.6911No
1013191HNRNPL (heterogeneous nuclear ribonucleoprotein L)40066.7660.6858No
10225888ZNF473 (zinc finger protein 473)44095.4670.6668No
1035437POLR2H (polymerase (RNA) II (DNA directed) polypeptide H)45965.0000.6585No
1049883POM121 (POM121 membrane glycoprotein (rat))50273.9780.6379No
1052068"ERCC2 (excision repair cross-complementing rodent repair deficiency, complementation group 2)"51593.7020.6320No
10610421CD2BP2 (CD2 (cytoplasmic tail) binding protein 2)53573.3070.6228No
1071478"CSTF2 (cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa)"54943.0740.6166No
10810978"CLP1 (CLP1, cleavage and polyadenylation factor I subunit, homolog (S. cerevisiae))"57832.6370.6028No
1092071"ERCC3 (excision repair cross-complementing rodent repair deficiency, complementation group 3 (xeroderma pigmentosum group B complementing))"59442.4390.5953No
110134353"LSM11 (LSM11, U7 small nuclear RNA associated)"60242.3460.5918No
1112965"GTF2H1 (general transcription factor IIH, polypeptide 1, 62kDa)"61552.1630.5857No
1125440"POLR2K (polymerase (RNA) II (DNA directed) polypeptide K, 7.0kDa)"63211.9700.5779No
1132962"GTF2F1 (general transcription factor IIF, polypeptide 1, 74kDa)"63881.8940.5750No
114652147"LOC652147 (similar to U5 snRNP-specific protein, 200 kDa)"65321.7500.5682No
11557794SF4 (splicing factor 4)66911.5970.5606No
11610949HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0)79900.7410.4964No
1178106"PABPN1 (poly(A) binding protein, nuclear 1)"98660.1670.4035No
118339"APOBEC1 (apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1)"10946-0.0820.3500No
1193181HNRNPA2B1 (heterogeneous nuclear ribonucleoprotein A2/B1)13361-0.7270.2305No
1209785DHX38 (DEAH (Asp-Glu-Ala-His) box polypeptide 38)14908-1.4910.1541No
12153981"CPSF2 (cleavage and polyadenylation specific factor 2, 100kDa)"15120-1.6540.1440No
1228175"SF3A2 (splicing factor 3a, subunit 2, 66kDa)"15425-1.8930.1292No
12323451"SF3B1 (splicing factor 3b, subunit 1, 155kDa)"15886-2.3480.1068No
1248021NUP214 (nucleoporin 214kDa)16014-2.5130.1010No
1258732RNGTT (RNA guanylyltransferase and 5'-phosphatase)16653-3.4990.0700No
1268731RNMT (RNA (guanine-7-) methyltransferase)16887-3.9670.0591No
1278086"AAAS (achalasia, adrenocortical insufficiency, alacrimia (Allgrove, triple-A))"16985-4.2110.0550No
12811100HNRNPUL1 (heterogeneous nuclear ribonucleoprotein U-like 1)17403-5.3000.0353No
1297175TPR (translocated promoter region (to activated MET oncogene))17416-5.3360.0356No
130104"ADARB1 (adenosine deaminase, RNA-specific, B1 (RED1 homolog rat))"17599-6.0040.0277No
13110181RBM5 (RNA binding motif protein 5)17795-6.8970.0192No
13210594PRPF8 (PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae))17881-7.2460.0162No
1334670HNRNPM (heterogeneous nuclear ribonucleoprotein M)17936-7.5870.0149No
1341477"CSTF1 (cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa)"18059-8.1900.0103No
1355439"POLR2J (polymerase (RNA) II (DNA directed) polypeptide J, 13.3kDa)"18134-8.6610.0081No
1363178HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1)18139-8.6910.0094No
13711097NUPL2 (nucleoporin like 2)18164-8.8500.0098No
1383190HNRNPK (heterogeneous nuclear ribonucleoprotein K)18557-11.620-0.0076No
13924148PRPF6 (PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae))18644-12.510-0.0097No
14022826"DNAJC8 (DnaJ (Hsp40) homolog, subfamily C, member 8)"18654-12.595-0.0079No
1418683"SFRS9 (splicing factor, arginine/serine-rich 9)"18964-16.250-0.0204No
14210992"SF3B2 (splicing factor 3b, subunit 2, 145kDa)"19037-17.576-0.0209No
1436637SNRPG (small nuclear ribonucleoprotein polypeptide G)19107-18.986-0.0210No
1445725PTBP1 (polypyrimidine tract binding protein 1)19275-22.290-0.0254No
14551585"PCF11 (PCF11, cleavage and polyadenylation factor subunit, homolog (S. cerevisiae))"19324-23.584-0.0236No
14623020ASCC3L1 (activating signal cointegrator 1 complex subunit 3-like 1)19614-32.261-0.0323No
1471022CDK7 (cyclin-dependent kinase 7)19757-39.600-0.0324No
148220988HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)19789-41.609-0.0267No
1493183HNRNPC (heterogeneous nuclear ribonucleoprotein C (C1/C2))19797-42.022-0.0197No
1506430"SFRS5 (splicing factor, arginine/serine-rich 5)"19923-53.636-0.0165No
1515094PCBP2 (poly(rC) binding protein 2)20076-73.183-0.0113No
152103"ADAR (adenosine deaminase, RNA-specific)"20231-134.6770.0047No
Table: GSEA details [plain text format]



Fig 2: REACTOME|REACT_1675.1   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REACTOME|REACT_1675.1: Random ES distribution   
Gene set null distribution of ES for REACTOME|REACT_1675.1