Dataset | expression_12hrs.Phenotype.cls #treated_versus_cont.Phenotype.cls #treated_versus_cont_repos
Phenotype | Phenotype.cls#treated_versus_cont_repos
Upregulated in class | cont
GeneSet | GO|GO:0001046
Enrichment Score (ES) | -0.89898753
Normalized Enrichment Score (NES) | -1.5749193
Nominal p-value | 0.014319809
FDR q-value | 0.30423152
FWER p-Value | 1.0
Table: GSEA Results Summary

Fig 1: Enrichment plot: GO|GO:0001046
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

| PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT
1 | 6658 | SOX3 (SRY (sex determining region Y)-box 3) |  |  | 2144 | 17.526 | -0.0729 | No
2 | 6662 | SOX9 (SRY (sex determining region Y)-box 9) |  |  | 5204 | 3.599 | -0.2167 | No
3 | 6656 | SOX1 (SRY (sex determining region Y)-box 1) |  |  | 5773 | 2.657 | -0.2398 | No
4 | 30812 | SOX8 (SRY (sex determining region Y)-box 8) |  |  | 8253 | 0.631 | -0.3606 | No
5 | 5080 | PAX6 (paired box 6) |  |  | 14826 | -1.435 | -0.6814 | No
6 | 7849 | PAX8 (paired box 8) |  |  | 15035 | -1.587 | -0.6887 | No
7 | 84166 | "NLRC5 (NLR family, CARD domain containing 5)" |  |  | 16156 | -2.702 | -0.7388 | No
8 | 5978 | REST (RE1-silencing transcription factor) |  |  | 17117 | -4.547 | -0.7776 | No
9 | 6659 | SOX4 (SRY (sex determining region Y)-box 4) |  |  | 19584 | -30.987 | -0.8412 | Yes
10 | 6772 | "STAT1 (signal transducer and activator of transcription 1, 91kDa)" |  |  | 20302 | -215.432 | -0.4751 | Yes
11 | 2625 | GATA3 (GATA binding protein 3) |  |  | 20312 | -255.499 | 0.0006 | Yes
Table: GSEA details [plain text format]

Fig 2: GO|GO:0001046
Blue-Pink O' Gram in the Space of the Analyzed GeneSet
Fig 3: GO|GO:0001046: Random ES distribution
Gene set null distribution of ES for GO|GO:0001046