Dataset | expression_12hrs.Phenotype.cls #treated_versus_cont.Phenotype.cls #treated_versus_cont_repos |
Phenotype | Phenotype.cls#treated_versus_cont_repos |
Upregulated in class | cont |
GeneSet | PATHWAY INTERACTION DATABASE NCI-NATURE CURATED DATA|BMP RECEPTOR SIGNALING |
Enrichment Score (ES) | -0.7195168 |
Normalized Enrichment Score (NES) | -1.6264127 |
Nominal p-value | 0.015243903 |
FDR q-value | 0.2565163 |
FWER p-Value | 1.0 |
PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
---|---|---|---|---|---|---|---|---|
1 | 657 | "BMPR1A (bone morphogenetic protein receptor, type IA)" | 2168 | 17.378 | -0.0778 | No | ||
2 | 10468 | FST (follistatin) | 3072 | 10.587 | -0.1046 | No | ||
3 | 6885 | MAP3K7 (mitogen-activated protein kinase kinase kinase 7) | 3408 | 9.133 | -0.1058 | No | ||
4 | 4092 | SMAD7 (SMAD family member 7) | 4318 | 5.717 | -0.1410 | No | ||
5 | 9765 | "ZFYVE16 (zinc finger, FYVE domain containing 16)" | 4470 | 5.329 | -0.1395 | No | ||
6 | 56963 | "RGMA (RGM domain family, member A)" | 4543 | 5.124 | -0.1345 | No | ||
7 | 57154 | SMURF1 (SMAD specific E3 ubiquitin protein ligase 1) | 4836 | 4.388 | -0.1415 | No | ||
8 | 4090 | SMAD5 (SMAD family member 5) | 4982 | 4.072 | -0.1419 | No | ||
9 | 10217 | "CTDSPL (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like)" | 5108 | 3.800 | -0.1417 | No | ||
10 | 4093 | SMAD9 (SMAD family member 9) | 5227 | 3.546 | -0.1415 | No | ||
11 | 64750 | SMURF2 (SMAD specific E3 ubiquitin protein ligase 2) | 6820 | 1.493 | -0.2175 | No | ||
12 | 9350 | "CER1 (cerberus 1, cysteine knot superfamily, homolog (Xenopus laevis))" | 7023 | 1.334 | -0.2252 | No | ||
13 | 197 | AHSG (alpha-2-HS-glycoprotein) | 7151 | 1.229 | -0.2294 | No | ||
14 | 9241 | NOG (noggin) | 7883 | 0.792 | -0.2642 | No | ||
15 | 2932 | GSK3B (glycogen synthase kinase 3 beta) | 8018 | 0.725 | -0.2695 | No | ||
16 | 4086 | SMAD1 (SMAD family member 1) | 8706 | 0.479 | -0.3026 | No | ||
17 | 148738 | HFE2 (hemochromatosis type 2 (juvenile)) | 10038 | 0.124 | -0.3680 | No | ||
18 | 4089 | SMAD4 (SMAD family member 4) | 10664 | -0.017 | -0.3988 | No | ||
19 | 8646 | CHRD (chordin) | 10767 | -0.040 | -0.4038 | No | ||
20 | 91851 | CHRDL1 (chordin-like 1) | 10806 | -0.049 | -0.4056 | No | ||
21 | 25928 | SOSTDC1 (sclerostin domain containing 1) | 11292 | -0.162 | -0.4292 | No | ||
22 | 26585 | "GREM1 (gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis))" | 11493 | -0.211 | -0.4387 | No | ||
23 | 23645 | "PPP1R15A (protein phosphatase 1, regulatory (inhibitor) subunit 15A)" | 14285 | -1.125 | -0.5744 | No | ||
24 | 650 | BMP2 (bone morphogenetic protein 2) | 14423 | -1.193 | -0.5792 | No | ||
25 | 654 | BMP6 (bone morphogenetic protein 6) | 14674 | -1.340 | -0.5893 | No | ||
26 | 10454 | MAP3K7IP1 (mitogen-activated protein kinase kinase kinase 7 interacting protein 1) | 14980 | -1.550 | -0.6017 | No | ||
27 | 8021 | NUP214 (nucleoporin 214kDa) | 16014 | -2.513 | -0.6484 | No | ||
28 | 23118 | MAP3K7IP2 (mitogen-activated protein kinase kinase kinase 7 interacting protein 2) | 16913 | -4.022 | -0.6859 | No | ||
29 | 285704 | "RGMB (RGM domain family, member B)" | 17595 | -5.989 | -0.7095 | Yes | ||
30 | 5494 | "PPM1A (protein phosphatase 1A (formerly 2C), magnesium-dependent, alpha isoform)" | 17598 | -6.003 | -0.6995 | Yes | ||
31 | 5594 | MAPK1 (mitogen-activated protein kinase 1) | 18001 | -7.922 | -0.7061 | Yes | ||
32 | 658 | "BMPR1B (bone morphogenetic protein receptor, type IB)" | 18057 | -8.183 | -0.6951 | Yes | ||
33 | 659 | "BMPR2 (bone morphogenetic protein receptor, type II (serine/threonine kinase))" | 18100 | -8.454 | -0.6830 | Yes | ||
34 | 652 | BMP4 (bone morphogenetic protein 4) | 18378 | -10.143 | -0.6797 | Yes | ||
35 | 4091 | SMAD6 (SMAD family member 6) | 18569 | -11.753 | -0.6693 | Yes | ||
36 | 5499 | "PPP1CA (protein phosphatase 1, catalytic subunit, alpha isoform)" | 18582 | -11.854 | -0.6501 | Yes | ||
37 | 6497 | SKI (v-ski sarcoma viral oncogene homolog (avian)) | 18818 | -14.221 | -0.6378 | Yes | ||
38 | 331 | XIAP (X-linked inhibitor of apoptosis) | 19246 | -21.495 | -0.6229 | Yes | ||
39 | 655 | BMP7 (bone morphogenetic protein 7) | 19353 | -24.367 | -0.5873 | Yes | ||
40 | 58190 | "CTDSP1 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1)" | 19546 | -29.714 | -0.5470 | Yes | ||
41 | 10106 | "CTDSP2 (CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2)" | 19706 | -37.333 | -0.4923 | Yes | ||
42 | 25805 | BAMBI (BMP and activin membrane-bound inhibitor homolog (Xenopus laevis)) | 20317 | -312.036 | 0.0004 | Yes |