Datasetexpression_12hrs.Phenotype.cls
#treated_versus_cont.Phenotype.cls
#treated_versus_cont_repos
PhenotypePhenotype.cls#treated_versus_cont_repos
Upregulated in classcont
GeneSetGO|GO:0000139
Enrichment Score (ES)-0.59347
Normalized Enrichment Score (NES)-1.5864801
Nominal p-value0.0
FDR q-value0.29423037
FWER p-Value1.0
Table: GSEA Results Summary



Fig 1: Enrichment plot: GO|GO:0000139   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
111079RER1 (RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae))59455.501-0.0079No
24247"MGAT2 (mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase)"72348.1090.0044No
351360"MBTPS2 (membrane-bound transcription factor peptidase, site 2)"76246.6990.0206No
42683"B4GALT1 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1)"79145.2280.0368No
5347734"SLC35B2 (solute carrier family 35, member B2)"175021.631-0.0023No
651463GPR89B (G protein-coupled receptor 89B)178121.3330.0045No
7162"AP1B1 (adaptor-related protein complex 1, beta 1 subunit)"202018.565-0.0001No
879694"MANEA (mannosidase, endo-alpha)"209717.9440.0031No
98704"B4GALT2 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2)"217017.3700.0062No
1064924"SLC30A5 (solute carrier family 30 (zinc transporter), member 5)"217517.3450.0127No
1155331"PHCA (phytoceramidase, alkaline)"218717.2370.0189No
121315"COPB1 (coatomer protein complex, subunit beta 1)"220717.0850.0246No
138905"AP1S2 (adaptor-related protein complex 1, sigma 2 subunit)"224016.7450.0295No
147355"SLC35A2 (solute carrier family 35 (UDP-galactose transporter), member A2)"231215.9240.0321No
155154PDGFA (platelet-derived growth factor alpha polypeptide)234515.5510.0366No
1622926ATF6 (activating transcription factor 6)252814.0540.0330No
1711316"COPE (coatomer protein complex, subunit epsilon)"253913.9820.0379No
18148867"SLC30A7 (solute carrier family 30 (zinc transporter), member 7)"263613.1820.0383No
19340481"ZDHHC21 (zinc finger, DHHC-type containing 21)"265713.0820.0424No
2011041"B3GNT1 (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1)"270512.8460.0450No
21205428C3orf58 (chromosome 3 open reading frame 58)285711.9180.0422No
2226958"COPG2 (coatomer protein complex, subunit gamma 2)"292911.4590.0431No
2310675CSPG5 (chondroitin sulfate proteoglycan 5 (neuroglycan C))293211.4200.0474No
249197"SLC33A1 (solute carrier family 33 (acetyl-CoA transporter), member 1)"296911.1710.0500No
258703"B4GALT3 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3)"305610.6960.0498No
268907"AP1M1 (adaptor-related protein complex 1, mu 1 subunit)"314510.2050.0494No
2757410SCYL1 (SCY1-like 1 (S. cerevisiae))314610.1950.0534No
28653519GPR89A (G protein-coupled receptor 89A)317010.0810.0562No
294121"MAN1A1 (mannosidase, alpha, class 1A, member 1)"32109.9070.0581No
30857"CAV1 (caveolin 1, caveolae protein, 22kDa)"34069.1370.0519No
3155676"SLC30A6 (solute carrier family 30 (zinc transporter), member 6)"36248.2410.0444No
32130340"AP1S3 (adaptor-related protein complex 1, sigma 3 subunit)"37747.6150.0400No
3384912"SLC35B4 (solute carrier family 35, member B4)"37847.5760.0424No
3453947"A4GALT (alpha 1,4-galactosyltransferase)"38937.1150.0399No
352590GALNT2 (UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2))40496.6370.0347No
3627032"ATP2C1 (ATPase, Ca++ transporting, type 2C, member 1)"40806.5130.0358No
371785DNM2 (dynamin 2)43195.7150.0262No
389215LARGE (like-glycosyltransferase)43215.7120.0284No
391174"AP1S1 (adaptor-related protein complex 1, sigma 1 subunit)"46824.7560.0124No
40160"AP2A1 (adaptor-related protein complex 2, alpha 1 subunit)"46984.7250.0135No
4123563CHST5 (carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5)48054.4630.0099No
42408"ARRB1 (arrestin, beta 1)"49284.1730.0055No
4326229"B3GAT3 (beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I))"49624.1070.0055No
4422818"COPZ1 (coatomer protein complex, subunit zeta 1)"49714.0940.0067No
454124"MAN2A1 (mannosidase, alpha, class 2A, member 1)"50513.9190.0043No
465155PDGFB (platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog))53743.286-0.0104No
4755738ARFGAP1 (ADP-ribosylation factor GTPase activating protein 1)54923.077-0.0150No
4810066SCAMP2 (secretory carrier membrane protein 2)55433.000-0.0164No
498720"MBTPS1 (membrane-bound transcription factor peptidase, site 1)"56402.856-0.0200No
5051070NOSIP (nitric oxide synthase interacting protein)57702.660-0.0254No
519570GOSR2 (golgi SNAP receptor complex member 2)57992.617-0.0257No
528702"B4GALT4 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4)"64091.867-0.0552No
5363971KIF13A (kinesin family member 13A)64471.822-0.0563No
5410564ARFGEF2 (ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited))66311.647-0.0648No
559331"B4GALT6 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 6)"67911.520-0.0721No
569334"B4GALT5 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 5)"70751.290-0.0856No
5723162MAPK8IP3 (mitogen-activated protein kinase 8 interacting protein 3)74481.035-0.1036No
5810905"MAN1A2 (mannosidase, alpha, class 1A, member 2)"75530.966-0.1084No
5955790CSGALNACT1 (chondroitin sulfate N-acetylgalactosaminyltransferase 1)77250.877-0.1165No
6028"ABO (ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase))"79420.764-0.1269No
6122820"COPG (coatomer protein complex, subunit gamma)"80400.715-0.1315No
629435CHST2 (carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2)80490.709-0.1316No
63166929SGMS2 (sphingomyelin synthase 2)82120.650-0.1394No
6484679"SLC9A7 (solute carrier family 9 (sodium/hydrogen exchanger), member 7)"82460.634-0.1408No
654684NCAM1 (neural cell adhesion molecule 1)83220.605-0.1442No
6656034PDGFC (platelet derived growth factor C)88250.436-0.1690No
678906"AP1G2 (adaptor-related protein complex 1, gamma 2 subunit)"88580.428-0.1704No
688128"ST8SIA2 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2)"89280.407-0.1736No
69192683SCAMP5 (secretory carrier membrane protein 5)90000.386-0.1770No
7055454CSGALNACT2 (chondroitin sulfate N-acetylgalactosaminyltransferase 2)93250.298-0.1930No
716456SH3GL2 (SH3-domain GRB2-like 2)95500.241-0.2040No
7283988NCALD (neurocalcin delta)97410.197-0.2133No
73340273"ABCB5 (ATP-binding cassette, sub-family B (MDR/TAP), member 5)"97800.186-0.2151No
7425834"MGAT4C (mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative))"100260.128-0.2272No
7551046"ST8SIA3 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3)"101560.096-0.2336No
7623057NMNAT2 (nicotinamide nucleotide adenylyltransferase 2)10599-0.003-0.2555No
7755016MARCH1 (membrane-associated ring finger (C3HC4) 1)10672-0.020-0.2590No
7827315FRAG1 (FGF receptor activating protein 1)10746-0.035-0.2626No
7925999CLIP3 (CAP-GLY domain containing linker protein 3)11138-0.129-0.2820No
8010164CHST4 (carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 4)11287-0.162-0.2892No
815243"ABCB1 (ATP-binding cassette, sub-family B (MDR/TAP), member 1)"11576-0.229-0.3034No
828647"ABCB11 (ATP-binding cassette, sub-family B (MDR/TAP), member 11)"11670-0.253-0.3079No
834249"MGAT5 (mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase)"11859-0.294-0.3171No
84261729STEAP2 (six transmembrane epithelial antigen of the prostate 2)12567-0.474-0.3520No
8554503"ZDHHC13 (zinc finger, DHHC-type containing 13)"12650-0.499-0.3559No
864846NOS3 (nitric oxide synthase 3 (endothelial cell))12844-0.558-0.3652No
872697"GJA1 (gap junction protein, alpha 1, 43kDa)"13031-0.617-0.3742No
889182RASSF9 (Ras association (RalGDS/AF-6) domain family (N-terminal) member 9)13400-0.741-0.3922No
894248"MGAT3 (mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase)"13452-0.761-0.3944No
905244"ABCB4 (ATP-binding cassette, sub-family B (MDR/TAP), member 4)"14018-1.004-0.4220No
917851"MALL (mal, T-cell differentiation protein-like)"14373-1.171-0.4391No
9280310PDGFD (platelet derived growth factor D)14589-1.289-0.4493No
9311276AP1GBP1 (AP1 gamma subunit binding protein 1)14922-1.502-0.4651No
942524FUT2 (fucosyltransferase 2 (secretor status included))15133-1.664-0.4749No
955627PROS1 (protein S (alpha))15212-1.731-0.4781No
969159PCSK7 (proprotein convertase subtilisin/kexin type 7)15325-1.811-0.4829No
97682BSG (basigin (Ok blood group))15661-2.107-0.4987No
984122"MAN2A2 (mannosidase, alpha, class 2A, member 2)"15683-2.131-0.4989No
9957134"MAN1C1 (mannosidase, alpha, class 1C, member 1)"15697-2.146-0.4988No
10023390"ZDHHC17 (zinc finger, DHHC-type containing 17)"16024-2.532-0.5139No
101540"ATP7B (ATPase, Cu++ transporting, beta polypeptide)"16396-3.056-0.5311No
10223315"SLC9A8 (solute carrier family 9 (sodium/hydrogen exchanger), member 8)"16766-3.718-0.5480No
10311046"SLC35D2 (solute carrier family 35, member D2)"16855-3.878-0.5508No
1048869"ST3GAL5 (ST3 beta-galactoside alpha-2,3-sialyltransferase 5)"16915-4.025-0.5522No
1058729GBF1 (golgi-specific brefeldin A resistance factor 1)16921-4.035-0.5509No
10626119LDLRAP1 (low density lipoprotein receptor adaptor protein 1)16987-4.212-0.5525No
1079583ENTPD4 (ectonucleoside triphosphate diphosphohydrolase 4)17067-4.432-0.5547No
1082131EXT1 (exostoses (multiple) 1)17217-4.784-0.5602No
1096484"ST3GAL4 (ST3 beta-galactoside alpha-2,3-sialyltransferase 4)"17316-5.032-0.5631No
11051226"COPZ2 (coatomer protein complex, subunit zeta 2)"17410-5.319-0.5657No
1118674VAMP4 (vesicle-associated membrane protein 4)17627-6.114-0.5740No
112259230SGMS1 (sphingomyelin synthase 1)17680-6.357-0.5741No
1135045FURIN (furin (paired basic amino acid cleaving enzyme))17734-6.604-0.5742No
11410053"AP1M2 (adaptor-related protein complex 1, mu 2 subunit)"17870-7.186-0.5781No
11523443"SLC35A3 (solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member A3)"17942-7.622-0.5786No
11655062"WIPI1 (WD repeat domain, phosphoinositide interacting 1)"17994-7.878-0.5781No
11755343"SLC35C1 (solute carrier family 35, member C1)"18000-7.911-0.5753No
11855501CHST12 (carbohydrate (chondroitin 4) sulfotransferase 12)18065-8.250-0.5753No
1194245"MGAT1 (mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase)"18149-8.754-0.5760No
12010228STX6 (syntaxin 6)18157-8.788-0.5729No
121373TRIM23 (tripartite motif-containing 23)18300-9.614-0.5762No
1229980DOPEY2 (dopey family member 2)18370-10.069-0.5757No
12311320"MGAT4A (mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A)"18544-11.464-0.5799No
1247903"ST8SIA4 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4)"18749-13.590-0.5847No
1252802"GOLGA3 (golgi autoantigen, golgin subfamily a, 3)"18903-15.393-0.5863No
1269914"ATP2C2 (ATPase, Ca++ transporting, type 2C, member 2)"19048-17.814-0.5866Yes
1273382"ICA1 (islet cell autoantigen 1, 69kDa)"19049-17.825-0.5796Yes
12827236ARFIP1 (ADP-ribosylation factor interacting protein 1)19054-17.923-0.5729Yes
1295768QSOX1 (quiescin Q6 sulfhydryl oxidase 1)19195-20.482-0.5719Yes
1303134"HLA-F (major histocompatibility complex, class I, F)"19233-21.099-0.5655Yes
131375ARF1 (ADP-ribosylation factor 1)19469-27.515-0.5665Yes
1323133"HLA-E (major histocompatibility complex, class I, E)"19478-27.797-0.5561Yes
1339276"COPB2 (coatomer protein complex, subunit beta 2 (beta prime))"19491-28.306-0.5458Yes
134372ARCN1 (archain 1)19503-28.429-0.5353Yes
13511282"MGAT4B (mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B)"19520-28.872-0.5249Yes
1366480"ST6GAL1 (ST6 beta-galactosamide alpha-2,6-sialyltranferase 1)"19564-30.376-0.5152Yes
1372530"FUT8 (fucosyltransferase 8 (alpha (1,6) fucosyltransferase))"19607-31.965-0.5049Yes
13810559"SLC35A1 (solute carrier family 35 (CMP-sialic acid transporter), member A1)"19693-36.496-0.4950Yes
1396892TAPBP (TAP binding protein (tapasin))19699-36.965-0.4809Yes
140164"AP1G1 (adaptor-related protein complex 1, gamma 1 subunit)"19805-42.696-0.4695Yes
14164285RHBDF1 (rhomboid 5 homolog 1 (Drosophila))19826-44.436-0.4533Yes
1423135"HLA-G (major histocompatibility complex, class I, G)"19863-47.478-0.4367Yes
1431314"COPA (coatomer protein complex, subunit alpha)"19938-55.406-0.4189Yes
14454812AFTPH (aftiphilin)19968-58.680-0.3975Yes
1451201"CLN3 (ceroid-lipofuscinosis, neuronal 3)"19985-61.160-0.3746Yes
1463105"HLA-A (major histocompatibility complex, class I, A)"20027-65.132-0.3514Yes
1473106"HLA-B (major histocompatibility complex, class I, B)"20100-78.491-0.3245Yes
1483107"HLA-C (major histocompatibility complex, class I, C)"20243-142.867-0.2762Yes
14911345GABARAPL2 (GABA(A) receptor-associated protein-like 2)20300-214.017-0.1959Yes
150567B2M (beta-2-microglobulin)20305-220.982-0.1104Yes
1512778GNAS (GNAS complex locus)20315-287.2330.0005Yes
Table: GSEA details [plain text format]



Fig 2: GO|GO:0000139   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: GO|GO:0000139: Random ES distribution   
Gene set null distribution of ES for GO|GO:0000139