Dataset | expression_12hrs.Phenotype.cls #treated_versus_cont.Phenotype.cls #treated_versus_cont_repos
Phenotype | Phenotype.cls#treated_versus_cont_repos
Upregulated in class | cont
GeneSet | GO|GO:0012507
Enrichment Score (ES) | -0.8141148
Normalized Enrichment Score (NES) | -1.5708942
Nominal p-value | 0.020231213
FDR q-value | 0.3049475
FWER p-Value | 1.0
Table: GSEA Results Summary

Fig 1: Enrichment plot: GO|GO:0012507
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

| PROBE | DESCRIPTION (from dataset) | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT
1 | 203547 | LOC203547 (hypothetical protein LOC203547) |  |  | 1126 | 33.003 | -0.0158 | No
2 | 90411 | MCFD2 (multiple coagulation factor deficiency 2) |  |  | 1169 | 31.966 | 0.0206 | No
3 | 10427 | "SEC24B (SEC24 related gene family, member B (S. cerevisiae))" |  |  | 5222 | 3.561 | -0.1746 | No
4 | 9871 | "SEC24D (SEC24 related gene family, member D (S. cerevisiae))" |  |  | 15378 | -1.853 | -0.6724 | No
5 | 51128 | SAR1B (SAR1 gene homolog B (S. cerevisiae)) |  |  | 16892 | -3.976 | -0.7422 | No
6 | 9632 | "SEC24C (SEC24 related gene family, member C (S. cerevisiae))" |  |  | 18266 | -9.369 | -0.7985 | No
7 | 10802 | "SEC24A (SEC24 related gene family, member A (S. cerevisiae))" |  |  | 18548 | -11.495 | -0.7985 | Yes
8 | 6396 | SEC13 (SEC13 homolog (S. cerevisiae)) |  |  | 18834 | -14.381 | -0.7953 | Yes
9 | 10484 | SEC23A (Sec23 homolog A (S. cerevisiae)) |  |  | 19218 | -20.816 | -0.7891 | Yes
10 | 3134 | "HLA-F (major histocompatibility complex, class I, F)" |  |  | 19233 | -21.099 | -0.7644 | Yes
11 | 3133 | "HLA-E (major histocompatibility complex, class I, E)" |  |  | 19478 | -27.797 | -0.7430 | Yes
12 | 22872 | SEC31A (SEC31 homolog A (S. cerevisiae)) |  |  | 19760 | -39.650 | -0.7091 | Yes
13 | 3135 | "HLA-G (major histocompatibility complex, class I, G)" |  |  | 19863 | -47.478 | -0.6571 | Yes
14 | 3998 | "LMAN1 (lectin, mannose-binding, 1)" |  |  | 19954 | -57.564 | -0.5923 | Yes
15 | 3105 | "HLA-A (major histocompatibility complex, class I, A)" |  |  | 20027 | -65.132 | -0.5175 | Yes
16 | 3106 | "HLA-B (major histocompatibility complex, class I, B)" |  |  | 20100 | -78.491 | -0.4266 | Yes
17 | 3107 | "HLA-C (major histocompatibility complex, class I, C)" |  |  | 20243 | -142.867 | -0.2618 | Yes
18 | 567 | B2M (beta-2-microglobulin) |  |  | 20305 | -220.982 | 0.0010 | Yes
Table: GSEA details [plain text format]

Fig 2: GO|GO:0012507
Blue-Pink O' Gram in the Space of the Analyzed GeneSet
Fig 3: GO|GO:0012507: Random ES distribution
Gene set null distribution of ES for GO|GO:0012507