#acl All:read This page focuses on the Toronto Computational Biology community. = Seminars = An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar). Additional seminar lists: * [http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine] * [http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments * [http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry] * [http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science] * [http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine] * [http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics] * [http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments] * [http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML Statistical methods for genomics at SLRI] * [http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/ Centre for Mathematical Medicine seminars] = Conferences = A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page. A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page. = Courses = The University of Toronto [:Courses:offers a number of courses and programs] in computational biology. Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program]. The University of Waterloo [http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml undergraduate bioinformatics co-op program] and [http://monod.uwaterloo.ca/ bioinformatics research group]. = Toronto Computational Biology Community = == University of Toronto == ||Mainly computational|||||| || ||[http://baderlab.org Gary Bader]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Biomolecular interaction networks and pathways, molecular profiles, cancer|| ||[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]||Computer Science||Computational biology algorithms, machine learning|| ||[http://www.cs.toronto.edu/~brudno/ Michael Brudno]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[http://ashercutter.net/ Asher Cutter]||Ecology & Evolutionary Biology||Evolutionary genetics|| ||[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]||Biochemistry, Medical Genetics||Computational protein folding|| ||[http://www.psi.toronto.edu/ Brendan Frey]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[http://www.cs.toronto.edu/~juris/ Igor Jurisica]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[http://www.cs.toronto.edu/~lilien/ Ryan Lilien]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology|| ||[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62 Radhakrishnan Mahadevan]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis|| ||[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[http://www.psi.toronto.edu/~quaid/ Quaid Morris]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparitive genomics, cell system simulation|| ||[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]||Cell and Systems Biology||Arabidopsis thaliana gene expression analysis|| ||[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering|| ||[http://www.cs.toronto.edu/~roweis/ Sam Roweis]||Computer Science||Machine learning, Analysis of large datasets|| ||[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]||University Health Network @ MaRS||Molecular evolution|| ||[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]||Mechanical and Industrial Engineering||Data management|| ||[http://biochemistry.utoronto.ca/wodak/bch.html Shoshana Wodak]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering|| ||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comarative genomics, evolution, regulatory element prediction|| ||Mainly wet lab|||||| || ||[http://www.utoronto.ca/andrewslab/ Brenda Andrews]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[http://www.utoronto.ca/boonelab/ Charlie Boone]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]||Biochemistry, Medical Genetics||Protein folding, protein interactions|| ||[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]||Cell and Systems Biology||Comparative and evolutionary genomics, molecular evolution|| ||[http://www.utoronto.ca/emililab/ Andrew Emili]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[http://chemogenomics.med.utoronto.ca/ Guri Giaever]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation|| ||[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]||Biochemistry||Molecular chapersones|| ||[http://hugheslab.med.utoronto.ca/ Tim Hughes]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays|| ||[http://chemogenomics.med.utoronto.ca/ Corey Nislow]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[http://pawsonlab.mshri.on.ca/ Tony Pawson]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains|| ||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography|| ||[http://www.tcag.ca/scherer/ Steve Scherer]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics|| ||[http://www.utoronto.ca/cancyto/ Jeremy Squire]||Princess Margaret Hospital||Microarrays and cancer|| ||[http://www.wlstanfordlab.com/ William Stanford]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[http://individual.utoronto.ca/ktruong/ Kevin Truong]||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering||Protein engineering, bioinformatics|| ||[http://www.mshri.on.ca/tyers/ Mike Tyers]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases|| ||[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays|| ||[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks|| ||[http://bigten.med.utoronto.ca Christopher Yip]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly|| ||Biostats and epidemiology|||||| || ||[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph Joseph Beyene]||Hospital for Sick Children||Interest in gene expression microarray analysis|| ||[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais Laurent Briollais]||Samuel Lunenfeld Research Institute||Genetic interactions, graphical models|| ||[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[http://fisher.utstat.toronto.edu/~rafal/welcome.html Rafal Kustra]||Public Health Sciences||Mining large datasets, microarray analysis|| ||[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]||Princess Margaret Hospital||Interest in gene expression microarray analysis|| ||Bioethics|||||| || ||[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]||Joint Centre for Bioethics||Genomics and global health|| ||Centres|||||| || ||[http://www.ccb.sickkids.ca/ Centre for Computational Biology]||Hospital for Sick Children||Support and services|| ||[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics|| ||[http://www.cmhd.ca/ Centre for Modeling Human Disease]||Centre for Phenogenomics||Gene trap database|| ||[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]||University Health Network, University of Toronto||eHealth|| ||[http://www.ocbn.ca/ Ontario Cancer Biomarker Network]||MaRS||Cancer Biomarkers|| ||[http://www.crio.on.ca/ Cancer Research Institute of Ontario]||MaRS||Coming soon|| ||[http://www.fields.utoronto.ca/programs/scientific/CMM/ Centre for Mathematical Medicine]||Fields Institute||Medical Applications of Math|| == York University == ||[http://www.cs.yorku.ca/~datta/ Suprakash Datta]||Computer Science||Genomic signal processing|| ||[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]||Mathematics and Statistics||Microarray analysis|| ||[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]||Computer Science||Databases, algorithms|| ||[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]||Mathematics and Statistics||Protein structure|| == Sites == ||See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],[[BR]] organized by Boris Steipe, for an Ontario-wide list.||attachment:CBIO_Logo_Name.gif|| ||See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],[[BR]] organized by Francis Ouellette, for a Canada-wide list.||attachment:bioinfoca.jpg|| ||See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools||attachment:helpdesk.jpg|| == Companies == ||Bioinformatics|||||| || ||Unleashed Informatics||http://unleashedinformatics.com/||200 Elm Street||Bioinformatics databases e.g. BIND, !SeqHound|| ||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS|| ||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking|| ||Clinical informatics|||||| || ||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management|| ||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management|| ||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software|| ||Chemiinformatics|||||| || ||Advanced Chemistry Development||https://www.acdlabs.com/||110 Yonge Street, 14th floor||Chemistry software|| ||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking|| ||Biomedical graphics|||||| || ||AXS Biomedical Animation Studio||http://axs3d.com/||MaRS building||Biomedical 3D animation|| ||Genomics|||||| || ||!ChondroGene||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)||Molecular diagnostics|| ||!CombiMatrix||http://www.combimatrix.com/||MaRS||Custom DNA microarrays|| ||Tm Bioscience||http://www.tmbioscience.com/||439 University Ave, Suite 900||DNA-based diagnostics|| ||Proteomics|||||| || ||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software|| ||Infochromics||http://www.infochromics.com/||MaRS building||Proteomics data analysis software|| ||Pharmaceutical|||||| || ||Sanofi Pasteur||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West||Vaccine development|| ||Biotech hubs|||||| || ||MaRS Discovery District (Medical and Related Services)||http://www.marsdd.com/||MaRS building||Biotechnology hub||