#acl All:read This page focuses on the Toronto Computational Biology community. = Seminars = An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar). Additional seminar lists: * [[http://www.biochemistry.utoronto.ca/department/cette_semaine.html|Cette Semaine]] * [[http://www.utoronto.ca/reg/notices_main.pl|University of Toronto Web Notice System]] maintains seminars for a few departments * [[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year|Chemistry]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year|Computer Science]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year|Medicine]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year|Statistics]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year|multiple departments]] * [[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML|Statistical methods for genomics at SLRI]] * [[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/|Centre for Mathematical Medicine seminars]] = Conferences = A [[Conferences|list of conferences]] that members of the Bader lab will attend or have attended is on the [[Conferences]] page. A general [[FutureConferences|list of interesting upcoming conferences]] is on the [[FutureConferences|Future Conferences]] page. = Courses = The University of Toronto [[Courses|offers a number of courses and programs]] in computational biology. Seneca College also offers a [[http://bioinformatics.senecac.on.ca/|bioinformatics program]]. The University of Waterloo [[http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml|undergraduate bioinformatics co-op program]] and [[http://monod.uwaterloo.ca/|bioinformatics research group]]. = Toronto Computational Biology Community = == University of Toronto == ||Mainly computational|||||| || ||[[http://baderlab.org|Gary Bader]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science||Biomolecular interaction networks and pathways, molecular profiles, cancer|| ||[[http://www.oicr.on.ca/research/batada.htm|Nizar Batada]]||Ontario Institute for Cancer Research||Epigenetics, noncoding RNA, genomics|| ||[[http://www.cs.toronto.edu/~bonner/|Anthony Bonner]]||Computer Science||Computational biology algorithms, machine learning|| ||[[http://www.cs.toronto.edu/~brudno/|Michael Brudno]]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[[http://ashercutter.net/|Asher Cutter]]||Ecology & Evolutionary Biology||Evolutionary genetics|| ||[[http://biochemistry.utoronto.ca/chan/bch.html|Hue-Sun Chan]]||Biochemistry, Medical Genetics||Computational protein folding|| ||[[http://www.psi.toronto.edu/|Brendan Frey]]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[[http://www.cs.toronto.edu/~juris/|Igor Jurisica]]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[[http://www.cs.toronto.edu/~lilien/|Ryan Lilien]]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology|| ||[[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62|Radhakrishnan Mahadevan]]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis|| ||[[http://www.utm.utoronto.ca/~mcmillen/|David McMillen]]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[[http://www.psi.toronto.edu/~quaid/|Quaid Morris]]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[[http://labs.eeb.utoronto.ca/moses/|Alan Moses]]||Cell and Systems Biology, Computer Science||Sequence analysis, evolution|| ||[[http://www.oicr.on.ca/aboutOicr_Staff.htm|Francis Ouellette]]||Ontario Institute of Cancer Research||Databases, gene finding|| ||[[http://www.biochemistry.utoronto.ca/parkinson/lab/|John Parkinson]]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparative genomics, cell system simulation|| ||[[http://biochemistry.utoronto.ca/pomes/bch.html|Regis Pomes]]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab|Nicholas Provart]]||Cell and Systems Biology||Arabidopsis thaliana gene expression analysis|| ||[[http://biochemistry.utoronto.ca/steipe/|Boris Steipe]]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering|| ||[[http://www.cs.toronto.edu/~roweis/|Sam Roweis]]||Computer Science||Machine learning, Analysis of large datasets|| ||[[http://www.uhnresearch.ca/labs/tillier/home.htm|Elisabeth Tillier]]||University Health Network @ MaRS||Molecular evolution|| ||[[http://www.mie.utoronto.ca/staff/profiles/thodoros/|Thodoros Topaloglou]]||Mechanical and Industrial Engineering||Data management|| ||[[http://biochemistry.utoronto.ca/wodak/bch.html|Shoshana Wodak]]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering|| ||[[http://www.utoronto.ca/zhanglab/|Zhaolei Zhang]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comparative genomics, evolution, regulatory element prediction|| ||Mainly wet lab|||||| || ||[[http://www.utoronto.ca/andrewslab/|Brenda Andrews]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[[http://www.utoronto.ca/boonelab/|Charlie Boone]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[[http://lambda.med.utoronto.ca/Davidson/|Alan Davidson]]||Biochemistry, Medical Genetics||Protein folding, protein interactions|| ||[[http://www.ecf.utoronto.ca/~sdavies/|Stephen Davies]]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/|David Guttman]]||Cell and Systems Biology||Comparative and evolutionary genomics, molecular evolution|| ||[[http://www.utoronto.ca/emililab/|Andrew Emili]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[[http://chemogenomics.med.utoronto.ca/|Guri Giaever]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM|Jack Greenblatt]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation|| ||[[http://biochemistry.utoronto.ca/houry/Labpage/index.html|Walid Houry]]||Biochemistry||Molecular chapersones|| ||[[http://hugheslab.med.utoronto.ca/|Tim Hughes]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays|| ||[[http://chemogenomics.med.utoronto.ca/|Corey Nislow]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[[http://pawsonlab.mshri.on.ca/|Tony Pawson]]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains|| ||[[http://xtal.oci.utoronto.ca/prive/index.html|Gil Privé]]||Ontario Cancer Institute||X-ray crystallography|| ||[[http://www.tcag.ca/scherer/|Steve Scherer]]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics|| ||[[http://www.utoronto.ca/cancyto/|Jeremy Squire]]||Princess Margaret Hospital||Microarrays and cancer|| ||[[http://www.wlstanfordlab.com/|William Stanford]]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[[http://individual.utoronto.ca/ktruong/|Kevin Truong]]||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering||Protein engineering, bioinformatics|| ||[[http://www.mshri.on.ca/tyers/|Mike Tyers]]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases|| ||[[http://kinase.uhnres.utoronto.ca/|Jim Woodgett]]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays|| ||[[http://www.mshri.on.ca/bios/Wrana.html|Jeff Wrana]]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks|| ||[[http://bigten.med.utoronto.ca|Christopher Yip]]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly|| ||Biostats and epidemiology|||||| || ||[[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph|Joseph Beyene]]||Hospital for Sick Children||Interest in gene expression microarray analysis|| ||[[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais|Laurent Briollais]]||Samuel Lunenfeld Research Institute||Genetic interactions, graphical models|| ||[[http://www.mshri.on.ca/mitacs/members/profiles.html|Shelley Bull]]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[[http://142.150.180.17/faculty_template.asp?GetFile=GCelia|Celia Greenwood]]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[[http://fisher.utstat.toronto.edu/~rafal/welcome.html|Rafal Kustra]]||Public Health Sciences||Mining large datasets, microarray analysis|| ||[[http://www.mshri.on.ca/bios/Mclaughlin.html|John McLaughlin]]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||[[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094|David Tritchler]]||Princess Margaret Hospital||Interest in gene expression microarray analysis|| ||Bioethics|||||| || ||[[http://www.utoronto.ca/jcb/about/singer.htm|Peter Singer]]||Joint Centre for Bioethics||Genomics and global health|| ||Centres|||||| || ||[[http://www.ccb.sickkids.ca/|Centre for Computational Biology]]||Hospital for Sick Children||Support and services|| ||[[http://www.phenogenomics.ca|Toronto Centre for Phenogenomics]]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics|| ||[[http://www.cmhd.ca/|Centre for Modeling Human Disease]]||Centre for Phenogenomics||Gene trap database|| ||[[http://www.ehealthinnovation.org/|Centre for Global eHealth Innovation]]||University Health Network, University of Toronto||eHealth|| ||[[http://www.ocbn.ca/|Ontario Cancer Biomarker Network]]||MaRS||Cancer Biomarkers|| ||[[http://www.crio.on.ca/|Cancer Research Institute of Ontario]]||MaRS||Coming soon|| ||[[http://www.fields.utoronto.ca/programs/scientific/CMM/|Centre for Mathematical Medicine]]||Fields Institute||Medical Applications of Math|| == York University == ||[[http://www.cs.yorku.ca/~datta/|Suprakash Datta]]||Computer Science||Genomic signal processing|| ||[[http://www.math.yorku.ca/~jgrigull/|Jörg Grigull]]||Mathematics and Statistics||Microarray analysis|| ||[[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument|Mariana Kant]]||Computer Science||Databases, algorithms|| ||[[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html|Walter Whiteley]]||Mathematics and Statistics||Protein structure|| == Sites == ||See the [[http://cbio.ca/|Computational Biology Institute of Ontario]] [[http://cbio.ca/community.html|community website]],<
> organized by Boris Steipe, for an Ontario-wide list.||{{attachment:CBIO_Logo_Name.gif}}|| ||See the [[http://bioinformatics.ca/|bioinformatics.ca]] [[http://bioinformatics.ca/bioinformatics_resources/people/|community website]],<
> organized by Francis Ouellette, for a Canada-wide list.||{{attachment:bioinfoca.jpg}}|| ||See the [[http://www.gchelpdesk.ualberta.ca/|Canadian Bioinformatics Help Desk]] for help with bioinformatics tools||{{attachment:helpdesk.jpg}}|| == Companies == ||Bioinformatics|||||| || ||Unleashed Informatics||http://unleashedinformatics.com/||200 Elm Street||Bioinformatics databases e.g. BIND, !SeqHound|| ||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS|| ||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking|| ||Clinical informatics|||||| || ||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management|| ||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management|| ||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software|| ||Chemiinformatics|||||| || ||Advanced Chemistry Development||https://www.acdlabs.com/||110 Yonge Street, 14th floor||Chemistry software|| ||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking|| ||Biomedical graphics|||||| || ||AXS Biomedical Animation Studio||http://axs3d.com/||MaRS building||Biomedical 3D animation|| ||Genomics|||||| || ||!ChondroGene||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)||Molecular diagnostics|| ||!CombiMatrix||http://www.combimatrix.com/||MaRS||Custom DNA microarrays|| ||Tm Bioscience||http://www.tmbioscience.com/||439 University Ave, Suite 900||DNA-based diagnostics|| ||Proteomics|||||| || ||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software|| ||Infochromics||http://www.infochromics.com/||MaRS building||Proteomics data analysis software|| ||Pharmaceutical|||||| || ||Sanofi Pasteur||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West||Vaccine development|| ||Biotech hubs|||||| || ||MaRS Discovery District (Medical and Related Services)||http://www.marsdd.com/||MaRS building||Biotechnology hub||