#acl DanieleMerico:read,write,delete,revert All:read
= Temporary Uploads =
== Current ==
=== PhD Thesis ===
 * [[attachment:PhD_Thesis_DanieleMerico_Final_MainBody.pdf]]
=== Novartis ===
 * [[attachment:Novartis.RData|Novartis RData]]
== Old ==
=== Gene Lists ===
 * [[attachment:Autism_Genes_DiseaseHub.txt|Autism from Disease Hub]]
=== Gene-set Collections ===
 * [[attachment:Hs_GO_KEGG_NCI.GMT|Gene Ontology, KEGG, NCI, PFAM]]
=== GSEA/EM Test Data ===
 * '''MCF7 Estrogen Treatment'''
   * [[attachment:MCF7_ExprMx_v2.txt|Gene Expression Table (txt)]]
   * [[attachment:MCF7_Estrogen_Pheno.CLS|GSEA Phenotype File (CLS)]]
   * [[attachment:MCF7_GSEA_Full.zip|Full GSEA results]]
=== WikiPathways ===
 * [[attachment:Hs_contributed.zip|Human collection]]
=== OBI ===
 * [[attachment:assignment_gse4600.docx|Yi Yan]]
=== Other Data ===
 * TNotch
   * [[attachment:TNotch_GeneLogisticFit_R_DM.zip|Logistic Fit for gene scoring]]
=== Enrichment Map BioPathways Presentation ===
[[attachment:ISMB09_DanieleMerico_EnrichmentMaps_06_def.ppt]]
=== Python NumPy Library ===
[[attachment:numpy-1.3.0-win32-superpack-python2.5.exe]]
=== Reactome Mouse Pathway data set (Dec 5, 2008) ===
[[attachment:mouse.owl]]
=== Utility Folder ===
[[attachment:Utility.zip]]
=== Debugging EM ===
==== Expression Matrix Display Bug ====
 * [[attachment:InputData.zip|Input Data]]
 * [[attachment:new_test.cys|Session]] 
==== Post-Analysis Bug ====
 * [[attachment:PostAnalysisBug_MapInput.zip|EM Input]]
 * [[attachment:PostAnalysis_Session_pval0002_fdr0075_ovlp025.cys|EM Session]]
 * [[attachment:PostAnalysis_miR1_TScan5.gmt|Post-analysis gmt (miR-1 set)]]
=== CNV ===
 * [[attachment:Temp_CNV_DiseaseGenes_Detail.pdf]]
 * [[attachment:Temp_CNV_DiseaseGenes_Full.pdf]]