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= Daniele Merico =

=== Contact ===
__Location__: Common Lab Area, 6th Floor (CCBR)<<BR>>
__Email__: <<MailTo(daniele DOT merico AT gmail DOT com)>><<BR>>
__Skype__: the-amerigo<<BR>>
__Linked-In__: [[http://www.linkedin.com/profile?viewProfile=&key=4048991&goback=%2Econ-*3conbro*40*4*051*4false*4*02*40%2Ebcc_2220874_1/|Daniele Merico]]<<BR>>

== Project Directory (Private) ==
 * [[DanieleMerico/MouseHeart|Mouse Heart Disease Model Project]] (Transcriptomics, Proteomics, miRNA, Pathways)
 * [[EnrichmentMap|Enrichment Map: Network Visualization of Enrichment Results]]
 * [[DanieleMerico/PathwayViz|Visualization of BioPAX encoded Pathways]]
 * Functional Enrichment and Pathway Analysis in human genetics  
   * [[DanieleMerico/Autism_CNV|De-novo CNV in Autism: Pathway Analysis]]
   * [[DanieleMerico/Asylum_CNV|Neuropsychological Disorders Meta-Analysis]]

== Past Collaborations ==
 * '''Clinical Phenotype Ontology'''
   * Gianluca Colombo (UNIMIB - DISCo, Milano, Italy)
 * '''Functional Landscape of RET Receptor Transcriptional Program'''
   * Marco Antoniotti (UNIMIB - DISCo, Milano, Italy)
   * Maria Grazia Borrello (Istituto Tumori - Milano, Italy)
   * Gariboldi Manuela (Istituto Tumori / IFOM/IEO - Milano, Italy)
 * '''Functional Landscape of p63 Transcription Factor Targets'''
   * Roberto Mantovani (UNIMI - DSBB, Milano, Italy)
   * Alessandro Terrinoni (Universita La Sapienza, Roma, Italy)

== R Code Directory (Public) ==
=== Microarray Data Analysis ===
 * [[DanieleMerico/HowtoDirectory/ExprSet|Affymetrix Microarray Data Processing]]
 * [[DanieleMerico/Code/Hierarchical_Pearson|Hierarchical Clustering using Pearson Correlaton]]
=== Gene-set Enrichment Analysis ===
 * [[DanieleMerico/Code/Bioc2GMT|Generate gene set collections from Bioconductor libraries]]
 * [[DanieleMerico/Code/Read_GMT|Reads a GMT file into a R list object, or binary matrix]]
=== ID Conversion ===
 * [[DanieleMerico/Code/Conv_Eg_Symbols|Entrez-Gene ID and Symbols]]

== Educational Material ==
 * [[attachment:CCBR_GeneExpressionLecture_2009_06.ppt|CCBR course on Microarray Data Analysis]]
 * [[attachment:OBI_EnrPathwAnalysis_I_v13.ppt|OBI course on Pathway Analysis]]

== CV and Publications ==
 * [[attachment:cvDanieleMericoEng29General.pdf|Complete CV (includes Publications)]]

== Trivia & Amenities ==
 * How not to build an ontology: The [[http://en.wikipedia.org/wiki/Celestial_Emporium_of_Benevolent_Recognition|Celestial Emporium of Benevolent Knowledge's Taxonomy]]

== Old Version ==
[[/Old|Old version of this page]]

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