#acl BaderLabGroup:read,write,revert,delete All:

= Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence =
This data is supplementary material for :

''Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence''

== Supplemental Figures ==
 * [[attachment:Supplementary Materials.doc]] - Figure S1-4 with legends

== Supplemental Tables ==
 * [[attachment:MousePDZdomainpeptideMap.xls|Table S1]] - Quantitative Mouse PDZ Domain-peptide Interaction Matrix
 * [[attachment:SemiSVR_DifferentEncoding.xls|Table S2]] - Performance on Different Encoding
 * [[attachment:SemiSVR_RandomBindingSites.xls|Table S3]] - Performance on Random Binding Sites
 * [[attachment:HumanScribbles.xls|Table S4]] -  Quantitative Human Scribble PDZ Domain-peptide Interaction Matrix
 * [[attachment:Worm_Fly_BlindTesting.xls|Table S5]] -  Blinding Testing on Worm and Fly 
 * [[attachment:SemiSVR_SemiQuantitativeAssessment.xls|Table S6]] - Performance of SemiSVR on Semi-Quantitative Assessment
 * [[attachment:SemiSVR_Prediction_HumanPDZ.xls|Table S7]] - Predicted Affinity Score for Putative Human PDZ Domain-peptide Pairs
 * [[attachment:SemiSVR_Prediction_MousePDZ.xls|Table S8]] - Predicted Affinity Score for Putative Mouse PDZ Domain-peptide Pairs

== Semi-quantitative Support Vector Regression Code ==
 * [[attachment:SemiSVR_code.Zip]] - Matlab code for SemiSVR (compressed). 

== PDZ Sequence ==
 * Mouse PDZ sequence : [[attachment:MousePDZSeq.fasta]]
 * Human Scribble PDZ sequence : [[attachment:HumanPDZSeq.fasta]]
 * ''C. elegens'' PDZ sequence : [[attachment:Celengans_PDZSeq.fasta]]
 * ''D. melanogaster'' PDZ Sequence : [[attachment:Fly_PDZSeq.fasta]]
 * SemiSVR Predictable Human PDZ Sequence : [[attachment:SemiSVRPredictableHumanPDZ.fa]]
 * SemiSVR Predictable Mouse PDZ Sequence : [[attachment:SemiSVRPredictableMousePDZ.fa]]