Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence
This data is supplementary material for :
Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence
Supplemental Figures
Supplementary Materials.doc - Figure S1-4 with legends
Supplemental Tables
Table S1 - Quantitative Mouse PDZ Domain-peptide Interaction Matrix
Table S2 - Performance on Different Encoding
Table S3 - Performance on Random Binding Sites
Table S4 - Quantitative Human Scribble PDZ Domain-peptide Interaction Matrix
Table S5 - Blinding Testing on Worm and Fly
Table S6 - Performance of SemiSVR on Semi-Quantitative Assessment
Table S7 - Predicted Affinity Score for Putative Human PDZ Domain-peptide Pairs
Table S8 - Predicted Affinity Score for Putative Mouse PDZ Domain-peptide Pairs
Semi-quantitative Support Vector Regression Code
SemiSVR_code.Zip - Matlab code for SemiSVR (compressed).
PDZ Sequence
Mouse PDZ sequence : MousePDZSeq.fasta
Human Scribble PDZ sequence : Human_PDZSeq.fasta
C. elegens PDZ sequence : Celegans_PDZSeq.fasta
D. melanogaster PDZ Sequence : Fly_PDZSeq.fasta
SemiSVR Predictable Human PDZ Sequence : SemiSVRpredictableHumanPDZ.fa
SemiSVR Predictable Mouse PDZ Sequence : SemiSVRpredictableMousePDZ.fa