#acl All:read DanieleMerico:write,delete,revert

= Gene-set Collections =
== 10-09-2010 Release GO-Pathways-PFAM ==
=== Sources ===
 * Gene-Ontology BP, CC, MF (up-propagated, all evidence codes)
 * KEGG Pathways
 * NCI Pathways
 * Biocarta Pathways
 * PFAM Protein Domains
=== R Code and Release Notes ===
R code to format the gene-sets
 * [[attachment:GeneSet_DB_v01_exec20100910.R|R Code]]
=== Gene-sets (GMT format) ===
GMT is the standard gene-set format adopted by a few resources, such as GSEA. Original [[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats#GMT:_Gene_Matrix_Transposed_file_format_.28.2A.gmt.29|description page]]
 * [[attachment:GO_K_NCI_BIOC_PF_Hs_eg.GMT|Human]]
 * [[attachment:GO_K_NCI_BIOC_PF_Mm_eg.GMT|Mouse]]
 * [[attachment:GO_K_NCI_BIOC_PF_Rn_eg.GMT|Rat]]
=== Orthology Table ===
 * [[attachment:Homologene_Build65_20100910.txt|NCBI Homologene Build 65]]
== Questions? ==
 * email: daniele [dot] merico [atsign] gmail [dot] com