[[TableOfContents()]] All: read = Introduction = This is the domain interaction team public wiki page mainly for all members to view the latest schedule, related public resources and news. Members can access other info [:InteractionTeam: here]. There is a Google group mailing list (interactionTeam@googlegroups.com) for disseminating news and announcements. New members must be invited to join the mailing list but any existing members can initiate an invitation as long as they have a Google account (Simply log into your Google account and access your googlegroup service). = Members = == Present == || '''Name'''||'''Research Project/Interests''' || || Andreas Ernst || || || Chris Tan || Signaling network evolution || || Dev Sidhu || || || David Gfeller || Specificity and robustness in PDZ networks || || Gary Bader || Biological network analysis and pathway information resources || || Shirley Hui || Domain specificity prediction || || Raffi Tonikian || Protein domain experimental specificity mapping || || Xiaojian Shao || Quantitative interaction prediction || || Xiaofeng Xin || Protein domain interaction experimental mapping || == Alumni == || '''Name'''||'''Research Project/Interests''' || || Ioana Ivan || Membrane interactions with PDZ domains || || Stacy Hung || Protein interaction prediction || || Lianet Lopez ||Protein domain interaction experimental mapping|| || Monica Raj (UBC, Vancouver) || Protein interaction prediction || || Moyez Dharsee || Protein interaction prediction || = Meetings = == Organization == 1. Meeting every 2 weeks 1. Brief WIP by everyone every alternate meeting == Schedule == From Fall 2007 onward '''Time''': Monday, 4.00 pm (unless indicated) '''Place''': CCBR, 6th floor meeting room (unless indicated) === 2008 === || '''Date'''||'''Presenter''' || '''Time/Location''' || '''Presentation Title''' || || Sep 22 || Chris || || ''Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains'', PNAS Sept 9, 2008 vol. 105 no. 36 13292-13297 || || Oct 6 || WIP || || || || Oct 20 || Rafi || || || || Nov 3 || WIP || || || || Nov 17 || David || || || || Dec 1 || WIP || || || || Dec 15 || Andreas || || || || Dec 29 || WIP || || || === 2009 === || '''Date'''||'''Presenter''' || '''Time/Location''' || '''Presentation Title''' || || Jan 12 || Shirley || || || || Jan 26 || WIP || || || || Feb 9 || Xiaojian || || || || Feb 22 || WIP || || || || Mar 9 || Shobhit || || || = Meeting Guide = == Journal Club Guide == These are good practices agreed by members 1. 3-4 papers discussed per journal club, related to a specific topic. 1. Paper(s) should be sent out one week before meeting, together with length of expected discussion time e.g. 5,15,30 minutes. Very important papers may take up the entire discussion session, however less important papers should be covered rapidly. 1. Paper(s) selected should be relevant to your own work, and preferably of general interest to members. 1. Include a brief introduction on the paper(s) and why you selected it (e.g. a landmark paper, of general interest, a technological advance, important discoveries, thought-provoking) 1. Summarize the paper at a high level. 1. More information is available at http://baderlab.org/Intranet/JournalClubGuidelines == Chairperson Guide == '''Mission''': To ensure meetings are conducted smoothly. This includes preparing the room (e.g. meeting room, projector, markers) '''''Before Meeting''''' 1. Remind the presenter of the next meeting (that it is her/his turn). 1. Send reminder to team members on date, time and venue of the next coming meeting (especially if there is change in the original schedule). 1. Ensure meeting room is available. CCBR meeting rooms are normally not locked. If not, get the key from Gary (he has keys to all CCBR meeting rooms). If Gary is not around, get the key from administration office at CCBR level 2. 1. Prepare projector if it is needed. Check with Gary. If not, get it from administration office at CCBR level 2. Laptop needed will be prepared by presenter. 1. Ensure markers and whiteboard eraser is available. '''''During Meeting''''' 1. Prepare and introduce agenda. It may be advisable to list "administrative issues" before a presentation or discussion. 1. Keep meeting on track (in term of agenda) 1. Keep meeting to the scheduled duration if time is a constraint 1. Moderate discussion and manage the group dynamics 1. Try not to let one person dominate. Ask for other opinions. If some people are silent, draw them out by asking for their thoughts. 1. Decide when to end debate on each topic. 1. Give a short summary or recap before going on to the next topic. '''''After Meeting''''' 1. Update wiki 1. Return projector == Booking a meeting room in CCBR == 1. The availability of CCBR meeting rooms can be found at http://tdccbr.med.utoronto.ca under "Seminar & Calender" menu. 1. To book a meeting room, email CCBR . Cancel a booking via the same email address. = Resources = == Papers by category == * [http://www.connotea.org/user/DIT/tag/DomainSpecificityPrediction Domain/Network Specificity] * [http://www.connotea.org/user/DIT/tag/NetworkEvolution Domain/Network Evolution] * [http://www.connotea.org/user/DIT/tag/ProteinInteractionPrediction Protein Interaction Prediction] * [http://www.connotea.org/user/DIT/tag/InteractionData Experimental methods or data for domain interactions] * Domain biology: * [http://www.connotea.org/user/DIT/tag/DomainPDZ PDZ Domains] * [http://www.connotea.org/user/DIT/tag/DomainSH3 SH3 Domains] * [http://www.connotea.org/user/DIT/tag/DomainWW WW Domains] == Other Groups and Researchers == === Protein Domain Groups/Researchers === * [http://cbm.bio.uniroma2.it/~manuela/ Manuela Helmer-Citterich] * [http://www.uniroma2.it/dottorato/CESARENI.htm Giovanni Cesareni]