#acl MagaliMichaut:read,write,delete,revert All:read #format wiki == Peer-reviewed journal == === 2011 === '''Putting genetic interactions into context through a global modular decomposition''', <
>Jeremy Bellay, Gowtham Atluri, Tina L. Sing, Kiana Toufighi, Michael Costanzo, Philippe Souza Moraes Ribeiro, Gaurav Pandey, Joshua Baller, Benjamin !VanderSluis, '''Magali Michaut''', Sangjo Han, Philip Kim, Grant W. Brown, Brenda J. Andrews, Charles Boone, Vipin Kumar, Chad L. Myers; <
>Genome research (accepted)<
> '''Protein Complexes are Central in the Yeast Genetic Landscape''', <
>'''Michaut M.''', Baryshnikova A., Costanzo M., Myers C.L., Andrews B.J., Boone C., Bader G.D.; <
>[[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001092|PLoS Computational Biology 7(2): e1001092 Feb 24 2011]] <
> [[http://www.ploscompbiol.org/article/browseIssue.action?issue=info%3Adoi%2F10.1371%2Fissue.pcbi.v07.i02|February 2011 Issue Cover]] <
> '''Bringing order to protein disorder through comparative genomics and genetic interactions''', <
>Bellay J*, Han S*, '''Michaut M*''', Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM;<
>[[http://genomebiology.com/2011/12/2/R14/abstract|Genome Biology 12(2):R14 Feb 15 2011]]<
>[[http://www.ncbi.nlm.nih.gov/pubmed/21324131|PubMed]] === 2010 === '''Highlights from the Sixth International Society for Computational Biology (ISCB) Student Council Symposium''', <
> Klijn C., Abeel T. and '''Michaut M.''';<
>[[http://www.biomedcentral.com/1471-2105/11?issue=S10| BMC Bioinformatics, 2010, 11(Suppl 10) 7 Dec 2010)]] <
>[[http://www.ncbi.nlm.nih.gov/pubmed/21495240| PudMed]] === 2009 === '''The !IntAct molecular interaction database in 2010''', <
>Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, '''Michaut M''', Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.; '''NAR''' (Oct. 2009). [[http://www.ncbi.nlm.nih.gov/pubmed/19850723| Pubmed]] '''Genome wide location analysis reveals a role for Sub1 in RNA polymerase III transcription''', <
> Tavenet A., Suleau A., Dubreuil G., Ferrari R., Ducrot C., '''Michaut M.''', Aude J.C., Dieci G., Lefebvre O., Conesa C., Acker J.; '''PNAS''', 106(34):14265-70 (Aug. 2009) [[http://www.ncbi.nlm.nih.gov/pubmed/19706510|PubMed]] [[http://www.pnas.org/content/106/34/14265.long|PNAS]] === 2008 === '''Highlights from the Fourth International Society for Computational Biology (ISCB) Student Council Symposium''', <
> '''Michaut M.''', Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; '''BMC Bioinformatics''', 2008, 9(Suppl 10):P1 (Oct. 2008). '''Genome-wide location analysis reveals a novel role of TFIIS in RNA polymerase III transcription''', <
> Ghavi-Helm Y., '''Michaut M.''', Acker J., Aude J.C., Thuriaux P., Werner M. and Soutourina J.; '''Genes & Development''', 22(14):1934-47 (Jul. 2008) [[http://www.ncbi.nlm.nih.gov/pubmed/18628399|PubMed]] [[http://genesdev.cshlp.org/content/22/14/1934.long|Genes&Dev]] '''InteroPORC: Automated Inference of Highly Conserved Protein Interaction Networks''', <
> '''Michaut M.''', Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; '''Bioinformatics''', 24(14): 1625-1631 (Jul. 2008) [[http://www.ncbi.nlm.nih.gov/pubmed/18508856|PubMed]] [[http://bioinformatics.oxfordjournals.org/content/24/14/1625.long|Bioinformatics]] === 2007 === '''Cadmium triggers an integrated reprogramming of the metabolism of ''Synechocystis'' PCC6803, under the control of the Slr1738 regulator''', <
> Houot L., Floutier M., Marteyn B., '''Michaut M.''', Picciocchi A., Legrain P., Aude J.C., Cassier-Chauvat C., Chauvat F.; '''BMC Genomics''', 24(14): 1625-1631 (Oct. 2007) [[http://www.ncbi.nlm.nih.gov/pubmed/17910763|PubMed]] [[http://www.biomedcentral.com/1471-2164/8/350|BioMed Central]] == Peer-reviewed conference == === 2011 === '''Protein Complexes are Central in the Yeast Genetic Landscape''', <
> '''Michaut M.''', A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; '''ISMB/ECCB 2011'''. '''Mapping Genetic Interactions in Various Contexts Provides Complementary Information''', <
> '''Michaut M.''', G. D. Bader; '''JOBIM 2011'''. === 2010 === '''Functional and structural disorder: comparative genomics and genetic interactions distinguish functional roles of disorder''', <
> J. Bellay, S. Han, '''M. Michaut''', G. D. Bader, C. L. Myers, P. M. Kim; '''JOBIM 2010'''. '''Exploring the Monochromatic Landscape in Yeast using Genetic Interactions and Known Processes Reveals the Importance of Protein Complexes''', <
> '''Michaut M.''', A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; '''JOBIM 2010'''. === 2008 === '''Inference of ''Synechocystis'' protein interaction network''', <
> '''Michaut M.''', Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; '''JOBIM 2008''', pages 99-104. === 2007 === '''Inference and validation of ''Synechocystis'' protein interaction network using orthology''', <
> '''Michaut M.''', Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; '''JOBIM 2007''', pages 229-234. == Book chapter == === 2007 === '''Mining biological data using pyramids''', <
> Polaillon G., Vescovo L., '''Michaut M.''', Aude J.C.; in Studies in Classification, Data Analysis, and Knowledge Organization, '''Springer-Verlag''', pages 397-408 (September 2007). == Other == === 2008 === '''Transcriptomic and proteomic data analysis to study responses to oxidative stress and heavy metals''', <
> '''Michaut M.''', PhD thesis, University of Orsay (November 2008)