Papers to Read

Pathway And Network Analysis

Characterizing regulatory path motifs in integrated networks using perturbational data
Genome Biology
http://genomebiology.com/2010/11/3/R32/abstract

Enrichment Analysis

GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach
Bioinformatics Oxford
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/7/905?etoc

Autism And Neurobiology

Gene Expression Signature database
Genome Biology
http://genomebiology.com/2007/8/7/R133

Genetics and Association Studies

Genome Sequence

Genome-wide functional analysis of human 5' untranslated region introns
Genome Biology
http://genomebiology.com/2010/11/3/R29

Transcriptomics And Microarray Analysis

Conserved developmental transcriptomes in evolutionary divergent species
Genome Biology
http://genomebiology.com/2010/11/3/R35
Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data
Bioinformatics Oxford
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/26/7/896?etoc

Expression Regulation and Epigenomics

ChIPs and regulatory bits
Nature Biotechnology
http://www.nature.com/nbt/journal/v28/n2/full/nbt0210-142.html

Cancer

Tumour microenvironment: Macrophages lead the way
Nature Reviews
http://www.nature.com/nrc/journal/v10/n3/full/nrc2816.html
Dissecting cancer through mathematics: from the cell to the animal model
Nature Reviews
http://www.nature.com/nrc/journal/v10/n3/full/nrc2808.html

Old Stack

GENERAL INTEREST

http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6VRT-4YK7PTR-4&_user=994540&_coverDate=03%2F11%2F2010&_rdoc=1&_fmt=high&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000050024&_version=1&_urlVersion=0&_userid=994540&md5=1fe2cec854708aaa237fb5f71fcd8771

http://www.sciencemag.org/cgi/content/abstract/science.1186802v1

http://www.nature.com/nrg/journal/v11/n4/full/nrg2771.html

http://www.nature.com/nrg/journal/v11/n4/full/nrg2773.html#Disease-susceptibility

http://www.nature.com/nrg/journal/v11/n4/full/nrg2773.html#Human-genetic-variation

http://www.nature.com/nrg/series/gwas/index.html

http://www.nature.com/nrg/journal/v11/n4/full/nrg2750.html

http://www.nature.com/nature/journal/v464/n7288/full/nature08845.html

http://www.nature.com/nrc/journal/v10/n4/full/nrc2817.html

http://www.nature.com/nrc/journal/v10/n4/full/nrc2820.html

AUTISM

http://www.nature.com/nrn/journal/v11/n4/full/nrn2807.html

http://stke.sciencemag.org/cgi/content/abstract/sigtrans;2/68/ra19?view=abstract

http://www.jbc.org/content/280/7/5972

http://www.nature.com/nrn/journal/v11/n4/full/nrn2805.html

COMPUTATIONAL GENETICS

http://www.nature.com/ng/journal/vaop/ncurrent/abs/ng.546.html

http://www.nature.com/ng/journal/vaop/ncurrent/abs/ng.548.html

MIRNA

http://genome.cshlp.org/content/18/4/610.abstract?ijkey=60b3fac85112a114551a20387b808134d0b63c4a&keytype2=tf_ipsecsha

OTHER GENERAL INTEREST

http://bib.oxfordjournals.org/cgi/content/full/11/2/210?etoc

http://bib.oxfordjournals.org/cgi/content/full/11/2/181?etoc

http://genomebiology.com/2010/11/2/R23/abstract

BisoGenet: a new tool for gene network building, visualization and analysis

Lists2Networks: Integrated analysis of gene/protein lists