#acl All:read LaylaOesper:write,delete,revert
= Semantic Network Summary Plugin Download Page =
== Brief Description ==
The Semantic Network Summary is a Cytsocape plugin that generates a word tag cloud from a user-defined node selection, summarizing an attribute of choice. For instance, if selected nodes are proteins, and the string attribute "full protein name" is selected, every string will be broken down into words, which will be plotted on a panel with size proportional to their frequency.

It is also possible to use the plugin to cluster words that appear together in the selected nodes. For instance, if node A has name attribute "Origin Recognition Complex 1" and node B has name attribute "Origin Recognition Complex 2", then the words "Origin", "Recognition" and "Complex" will be clustered together, following the order in which they appear. The plugin operates on any network and on any selected attributes, although it has been specifically designed for string attributes such as gene names or gene ontology annotations.

== Plugin Download ==
Updated 7/20/2010

 * [[attachment:SemanticNetworkSummary_v0.5.zip]]

== Sample Data Download ==
[[attachment:AlzheimerEM.cys]]

 * [[GSoC2010_UseExamples|Guided tutorial]] on the basic functioning of the Semantic Network Summary plugin.
 * [[GSoC2010_ParameterTutorial|Parameter tutorial]] on using all of the parameters available for the Semantic Network Summary plugin.

== User Guide ==
[[GSoC2010_UserManual|User Guide Link]]