#acl DavidGfeller:read,write,delete,revert All:read
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== Peer-reviewed journals ==

=== 2009 ===
'''Interpreting biological data using networks''', <<BR>> Merico D*, Gfeller D*, Bader G; '''Nature Biotechnology''', ''in press''. 

'''Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of uncharacterized endocytosis proteins''' <<BR>> Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Yu H, Winsor B, Vidal M, Davidson AR, Gerstein MB, Bader GD, Volkmer R, Cesareni G, Drubin DG, Kim PM, Sidhu SS, Boone C; '''PLoS Biology''', ''in press''.

=== 2008 ===
'''Synchronization and Spectral Coarse Graining in Oscillator Networks'''<<BR>> Gfeller D, De Los Rios P; '''Phys. Rev. Lett.''' 100, 174104 (2008) [[attachment:Sync-Gfeller-PRL-2008.pdf|PDF]]

=== 2007 ===

'''Spectral Coarse Graining of Complex Networks'''<<BR>> Gfeller D, De Los Rios P; '''Phys. Rev. Lett.''' 99, 038701 (2007) [[attachment:SCG-Gfeller-PRL-2007.pdf|PDF]]

'''Uncovering the topology of configuration space networks'''<<BR>>
Gfeller D, Morton de Lachapelle D, De Los Rios P, Caldarelli P, Rao F; '''Phys. Rev. E''' 76, 026113 (2007) [[attachment:ConfNet-Gfeller-PRE-2007.pdf|PDF]]

'''Complex Network Analysis of Free-energy Landscapes'''<<BR>> Gfeller D, De Los Rios P, Caflisch A, Rao F;
'''PNAS''' 104, 1817-1822 (2007) [[attachment:Alanine-Gfeller-PNAS-2007.pdf|PDF]]

=== 2005 ===

'''Finding instabilities in the community structure of complex networks'''<<BR>>
Gfeller D, Chappelier J-C, De Los Rios P; '''Phys. Rev. E''' 72 056135 (2005) [[attachment:Instabilities-Gfeller-PRE-2005.pdf|PDF]]


== Thesis ==

'''Simplifying complex networks: form a clustering to a coarse graining strategy''' Gfeller D, PhD Thesis.<<BR>>
EPFL Doctoral School Award (2007 EPFL best thesis). [[attachment:thesis-Gfeller-2007.pdf|PDF]]

== Conference papers ==

'''Synonym Dictionary Improvement through  Markov Clustering and Clustering Stability'''<<BR>> Gfeller D, Chappelier J-C, De Los Rios P; Proceedings of International Symposium an Applied Stochastic Models and Data Analysis (ASMDA'05) (2005) [[attachment:Ling-Gfeller-ASMDA-2005.pdf|PDF]]

== Conference talks and Seminar ==

Seminar at University of Z\"urich", Switzerland, 2005<<BR>>
Seminar at Max Planck Institute, Leipzig, 2006<<BR>>
Seminar at Boston University, 2006<<BR>>
Talk at International Workshop on Structure and Function of complex networks, 2006, Torino, Italy<<BR>>
Talk at International School of Complexity, Biological Networks, 2006, Erice, Italy<<BR>>
Talk at Biowire 2007, Cambridge, UK<<BR>>
Seminar at University of Toronto, Canada, 2007<<BR>>
Seminar at Mc Gill, Montreal, Canada, 2007<<BR>>

* equal contribution