#acl DavidGfeller:read,write,delete,revert All:read
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== Peer-reviewed journals ==

=== 2009 ===

'''Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of uncharacterized endocytosis proteins''' <<BR>> Tonikian R, Xin X, Toret CP, Gfeller D, Landgraf C, Panni S, Paoluzi S, Castagnoli L, Yu H, Winsor B, Vidal M, Davidson AR, Gerstein MB, Bader GD, Volkmer R, Cesareni G, Drubin DG, Kim PM, Sidhu SS, Boone C; '''PLoS Biology''' 7(10), e1000218 (2009).

'''How to visually interpret biological data using networks''', <<BR>> Merico D*, Gfeller D*, Bader G; '''Nature Biotechnology''' 27, 921-924 (2009) [[attachment:Primer.pdf|PDF]] <<BR>> Network Data: [[http://www.baderlab.org/NetworkPrimerNBT|http://www.baderlab.org/NetworkPrimerNBT]]. 


=== 2008 ===
'''Synchronization and Spectral Coarse Graining in Oscillator Networks'''<<BR>> Gfeller D, De Los Rios P; '''Phys. Rev. Lett.''' 100, 174104 (2008) [[attachment:Sync-Gfeller-PRL-2008.pdf|PDF]]

=== 2007 ===

'''Spectral Coarse Graining of Complex Networks'''<<BR>> Gfeller D, De Los Rios P; '''Phys. Rev. Lett.''' 99, 038701 (2007) [[attachment:SCG-Gfeller-PRL-2007.pdf|PDF]]

'''Uncovering the topology of configuration space networks'''<<BR>>
Gfeller D, Morton de Lachapelle D, De Los Rios P, Caldarelli P, Rao F; '''Phys. Rev. E''' 76, 026113 (2007) [[attachment:ConfNet-Gfeller-PRE-2007.pdf|PDF]]

'''Complex Network Analysis of Free-energy Landscapes'''<<BR>> Gfeller D, De Los Rios P, Caflisch A, Rao F;
'''PNAS''' 104, 1817-1822 (2007) [[attachment:Alanine-Gfeller-PNAS-2007.pdf|PDF]]

=== 2005 ===

'''Finding instabilities in the community structure of complex networks'''<<BR>>
Gfeller D, Chappelier J-C, De Los Rios P; '''Phys. Rev. E''' 72 056135 (2005) [[attachment:Instabilities-Gfeller-PRE-2005.pdf|PDF]]


== Thesis ==

'''Simplifying complex networks: form a clustering to a coarse graining strategy''' Gfeller D, PhD Thesis.<<BR>>
EPFL Doctoral School Award (2007 EPFL best thesis). [[attachment:thesis-Gfeller-2007.pdf|PDF]]

== Conference papers ==

'''Synonym Dictionary Improvement through  Markov Clustering and Clustering Stability'''<<BR>> Gfeller D, Chappelier J-C, De Los Rios P; Proceedings of International Symposium an Applied Stochastic Models and Data Analysis (ASMDA'05) (2005) [[attachment:Ling-Gfeller-ASMDA-2005.pdf|PDF]]

== Conference talks, posters and Seminar ==

Poster, Protein Modules and Networks in Health and Disease, Seefeld (2009)<<BR>>
Poster, ISMB (2008)<<BR>>
Seminar at Mc Gill, Peter Swain, Montreal, Canada, 2007<<BR>>
Seminar at University of Toronto, Gary Bader, Canada, 2007<<BR>>
Talk at Biowire 2007, Cambridge, UK<<BR>>
Talk at International School of Complexity, Biological Networks, 2006, Erice, Italy<<BR>>
Talk at International Workshop on Structure and Function of complex networks, 2006, Torino, Italy<<BR>>
Seminar at Boston University, Daniel Segre, 2006<<BR>>
Seminar at Max Planck Institute, Leipzig, 2006<<BR>>
Seminar at University of Z\"urich", Amedeo Caflisch, Switzerland, 2005<<BR>>


* equal contribution