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=== 2011 === '''Putting genetic interactions into context through a global modular decomposition''', <<BR>>Jeremy Bellay, Gowtham Atluri, Tina L. Sing, Kiana Toufighi, Michael Costanzo, Philippe Souza Moraes Ribeiro, Gaurav Pandey, Joshua Baller, Benjamin !VanderSluis, '''Magali Michaut''', Sangjo Han, Philip Kim, Grant W. Brown, Brenda J. Andrews, Charles Boone, Vipin Kumar, Chad L. Myers; <<BR>>Genome research (accepted)<<BR>> '''Protein Complexes are Central in the Yeast Genetic Landscape''', <<BR>>'''Michaut M.''', Baryshnikova A., Costanzo M., Myers C.L., Andrews B.J., Boone C., Bader G.D.; <<BR>>[[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1001092|PLoS Computational Biology 7(2): e1001092 Feb 24 2011]] <<BR>> [[http://www.ploscompbiol.org/article/browseIssue.action?issue=info%3Adoi%2F10.1371%2Fissue.pcbi.v07.i02|February 2011 Issue Cover]] <<BR>> '''Bringing order to protein disorder through comparative genomics and genetic interactions''', <<BR>>Bellay J*, Han S*, '''Michaut M*''', Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM;<<BR>>[[http://genomebiology.com/2011/12/2/R14/abstract|Genome Biology 12(2):R14 Feb 15 2011]]<<BR>>[[http://www.ncbi.nlm.nih.gov/pubmed/21324131|PubMed]] === 2010 === '''Highlights from the Sixth International Society for Computational Biology (ISCB) Student Council Symposium''', <<BR>> Klijn C., Abeel T. and '''Michaut M.''';<<BR>>[[http://www.biomedcentral.com/1471-2105/11?issue=S10| BMC Bioinformatics, 2010, 11(Suppl 10) 7 Dec 2010)]] |
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| '''The !IntAct molecular interaction database in 2010''', <<BR>> Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, '''Michaut M''', Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.; '''NAR''' (Oct. 2009). | '''The !IntAct molecular interaction database in 2010''', <<BR>>Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, '''Michaut M''', Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.; '''NAR''' (Oct. 2009). |
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| '''Genome wide location analysis reveals a role for Sub1 in RNA polymerase III transcription''', <<BR>> Tavenet A., Suleau A., Dubreuil G., Ferrari R., Ducrot C., '''Michaut M.''', Aude J.C., Dieci G., Lefebvre O., Conesa C., Acker J.; '''PNAS''', 106(34):14265-70 (Aug. 2009). | '''Genome wide location analysis reveals a role for Sub1 in RNA polymerase III transcription''', <<BR>> Tavenet A., Suleau A., Dubreuil G., Ferrari R., Ducrot C., '''Michaut M.''', Aude J.C., Dieci G., Lefebvre O., Conesa C., Acker J.; '''PNAS''', 106(34):14265-70 (Aug. 2009) [[http://www.ncbi.nlm.nih.gov/pubmed/19706510|PubMed]] [[http://www.pnas.org/content/106/34/14265.long|PNAS]] |
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| '''Genome-wide location analysis reveals a novel role of TFIIS in RNA polymerase III transcription''', <<BR>> Ghavi-Helm Y., '''Michaut M.''', Acker J., Aude J.C., Thuriaux P., Werner M. and Soutourina J.; '''Genes & Development''', 22(14):1934-47 (Jul. 2008). | '''Genome-wide location analysis reveals a novel role of TFIIS in RNA polymerase III transcription''', <<BR>> Ghavi-Helm Y., '''Michaut M.''', Acker J., Aude J.C., Thuriaux P., Werner M. and Soutourina J.; '''Genes & Development''', 22(14):1934-47 (Jul. 2008) [[http://www.ncbi.nlm.nih.gov/pubmed/18628399|PubMed]] [[http://genesdev.cshlp.org/content/22/14/1934.long|Genes&Dev]] |
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| '''InteroPORC: Automated Inference of Highly Conserved Protein Interaction Networks''', <<BR>> '''Michaut M.''', Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; '''Bioinformatics''', 24(14): 1625-1631 (Jul. 2008). | '''InteroPORC: Automated Inference of Highly Conserved Protein Interaction Networks''', <<BR>> '''Michaut M.''', Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; '''Bioinformatics''', 24(14): 1625-1631 (Jul. 2008) [[http://www.ncbi.nlm.nih.gov/pubmed/18508856|PubMed]] [[http://bioinformatics.oxfordjournals.org/content/24/14/1625.long|Bioinformatics]] |
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| '''Cadmium triggers an integrated reprogramming of the metabolism of ''Synechocystis'' PCC6803, under the control of the Slr1738 regulator''', <<BR>> Houot L., Floutier M., Marteyn B., '''Michaut M.''', Picciocchi A., Legrain P., Aude J.C., Cassier-Chauvat C., Chauvat F.; '''BMC Genomics''', 24(14): 1625-1631 (Oct. 2007). | '''Cadmium triggers an integrated reprogramming of the metabolism of ''Synechocystis'' PCC6803, under the control of the Slr1738 regulator''', <<BR>> Houot L., Floutier M., Marteyn B., '''Michaut M.''', Picciocchi A., Legrain P., Aude J.C., Cassier-Chauvat C., Chauvat F.; '''BMC Genomics''', 24(14): 1625-1631 (Oct. 2007) [[http://www.ncbi.nlm.nih.gov/pubmed/17910763|PubMed]] [[http://www.biomedcentral.com/1471-2164/8/350|BioMed Central]] |
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=== 2011 === '''Protein Complexes are Central in the Yeast Genetic Landscape''', <<BR>> '''Michaut M.''', A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; '''ISMB/ECCB 2011'''. '''Mapping Genetic Interactions in Various Contexts Provides Complementary Information''', <<BR>> '''Michaut M.''', G. D. Bader; '''JOBIM 2011'''. |
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Peer-reviewed journal
2011
Putting genetic interactions into context through a global modular decomposition,
Jeremy Bellay, Gowtham Atluri, Tina L. Sing, Kiana Toufighi, Michael Costanzo, Philippe Souza Moraes Ribeiro, Gaurav Pandey, Joshua Baller, Benjamin VanderSluis, Magali Michaut, Sangjo Han, Philip Kim, Grant W. Brown, Brenda J. Andrews, Charles Boone, Vipin Kumar, Chad L. Myers;
Genome research (accepted)
Protein Complexes are Central in the Yeast Genetic Landscape,
Michaut M., Baryshnikova A., Costanzo M., Myers C.L., Andrews B.J., Boone C., Bader G.D.;
PLoS Computational Biology 7(2): e1001092 Feb 24 2011
February 2011 Issue Cover
Bringing order to protein disorder through comparative genomics and genetic interactions,
Bellay J*, Han S*, Michaut M*, Kim T, Costanzo M, Andrews BJ, Boone C, Bader GD, Myers CL, Kim PM;
Genome Biology 12(2):R14 Feb 15 2011
PubMed
2010
Highlights from the Sixth International Society for Computational Biology (ISCB) Student Council Symposium,
Klijn C., Abeel T. and Michaut M.;
BMC Bioinformatics, 2010, 11(Suppl 10) 7 Dec 2010)
2009
The IntAct molecular interaction database in 2010,
Aranda B, Achuthan P, Alam-Faruque Y, Armean I, Bridge A, Derow C, Feuermann M, Ghanbarian AT, Kerrien S, Khadake J, Kerssemakers J, Leroy C, Menden M, Michaut M, Montecchi-Palazzi L, Neuhauser SN, Orchard S, Perreau V, Roechert B, van Eijk K, Hermjakob H.; NAR (Oct. 2009). Pubmed
Genome wide location analysis reveals a role for Sub1 in RNA polymerase III transcription,
Tavenet A., Suleau A., Dubreuil G., Ferrari R., Ducrot C., Michaut M., Aude J.C., Dieci G., Lefebvre O., Conesa C., Acker J.; PNAS, 106(34):14265-70 (Aug. 2009) PubMed PNAS
2008
Highlights from the Fourth International Society for Computational Biology (ISCB) Student Council Symposium,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; BMC Bioinformatics, 2008, 9(Suppl 10):P1 (Oct. 2008).
Genome-wide location analysis reveals a novel role of TFIIS in RNA polymerase III transcription,
Ghavi-Helm Y., Michaut M., Acker J., Aude J.C., Thuriaux P., Werner M. and Soutourina J.; Genes & Development, 22(14):1934-47 (Jul. 2008) PubMed Genes&Dev
InteroPORC: Automated Inference of Highly Conserved Protein Interaction Networks,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; Bioinformatics, 24(14): 1625-1631 (Jul. 2008) PubMed Bioinformatics
2007
Cadmium triggers an integrated reprogramming of the metabolism of Synechocystis PCC6803, under the control of the Slr1738 regulator,
Houot L., Floutier M., Marteyn B., Michaut M., Picciocchi A., Legrain P., Aude J.C., Cassier-Chauvat C., Chauvat F.; BMC Genomics, 24(14): 1625-1631 (Oct. 2007) PubMed BioMed Central
Peer-reviewed conference
2011
Protein Complexes are Central in the Yeast Genetic Landscape,
Michaut M., A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; ISMB/ECCB 2011.
Mapping Genetic Interactions in Various Contexts Provides Complementary Information,
Michaut M., G. D. Bader; JOBIM 2011.
2010
Functional and structural disorder: comparative genomics and genetic interactions distinguish functional roles of disorder,
J. Bellay, S. Han, M. Michaut, G. D. Bader, C. L. Myers, P. M. Kim; JOBIM 2010.
Exploring the Monochromatic Landscape in Yeast using Genetic Interactions and Known Processes Reveals the Importance of Protein Complexes,
Michaut M., A.Baryshnikova, M. Costanzo, C. L. Myers, B. Andrews, C. Boone, G. D. Bader; JOBIM 2010.
2008
Inference of Synechocystis protein interaction network,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; JOBIM 2008, pages 99-104.
2007
Inference and validation of Synechocystis protein interaction network using orthology,
Michaut M., Kerrien S., Montecchi-Palazzi L., Chauvat F., Cassier-Chauvat C., Aude J.C., Legrain P., Hermjakob H.; JOBIM 2007, pages 229-234.
Book chapter
2007
Mining biological data using pyramids,
Polaillon G., Vescovo L., Michaut M., Aude J.C.; in Studies in Classification, Data Analysis, and Knowledge Organization, Springer-Verlag, pages 397-408 (September 2007).
Other
2008
Transcriptomic and proteomic data analysis to study responses to oxidative stress and heavy metals,
Michaut M., PhD thesis, University of Orsay (November 2008)