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Toronto Computational Biology Seminars

We maintain an up to date list of [:Seminars:computational biology relevant seminars in Toronto]. You can subscribe to the page to get e-mail alerts whenever a new seminar is added, or you can subscribe to the RSS feed for this website at the RecentChanges page.

["Seminars"]

Additional seminar lists:

[http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine]
[http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments

Banting and Best has journal club on Tuesdays at 12:30pm and seminars on Friday at 12:30pm. TDCCBR has seminars Fridays at 1pm in the red room. The Hughes lab genomics journal club is at 4pm Wednesdays. Medical Genetics invited speaker seminars are at 4pm Mondays and student seminars are at 3pm Tuesdays.

Conferences

A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page.

Toronto Computational Biology Community

University of Toronto

Mainly computational
[http://baderlab.org Gary Bader]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Biomolecular interaction networks and pathways
[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]	Computer Science	Computational biology algorithms, machine learning
[http://www.cs.toronto.edu/~brudno/ Michael Brudno]	Computer Science, Donnelly Centre for Cellular and Biomedical Research	Computational biology algorithms
[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]	Biochemistry	Computational protein folding
[http://www.psi.toronto.edu/ Brendan Frey]	Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research	Bayesian networks, machine learning algorithms
[http://www.blueprint.org Chris Hogue]	Biochemistry	Molecular interaction database, pathway simulation, protein folding
[http://www.cs.toronto.edu/~juris/ Igor Jurisica]	Ontario Cancer Institute @ MaRS, Computer Science	Cancer informatics
[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]	UofT, Mississauga	Quantitive biology, cell system simulation
[http://www.psi.toronto.edu/~quaid/ Quaid Morris]	Donnelly Centre for Cellular and Biomedical Research, Computer Science	Machine learning algorithms
[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]	Hospital for Sick Children @ MaRS	Comparitive genomics, cell system simulation
[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]	Hospital for Sick Children	Molecular dynamics simulations of proteins
[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]	Botany	Arabidopsis thaliana gene expression analysis
[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]	Biochemistry, Molecular and Medical Genetics	Structural bioinformatics, protein engineering
[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]	University Health Network @ MaRS	Molecular evolution
[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]	Mechanical and Industrial Engineering	Data management
[http://www.sickkids.on.ca/research/custom/wodak.asp Shoshana Wodak]	Hospital for Sick Children	Transcription factor-DNA binding, protein docking and engineering
[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Comarative genomics, evolution, regulatory element prediction
Mainly wet lab
[http://www.utoronto.ca/boonelab/ Charlie Boone]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Genetic and physical interactions in yeast
[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]	Institute for Biomaterials and Biomedical Engineering	Genetic ciruits, DNA computing
[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]	Botany	Comparative and evolutionary genomics, molecular evolution
[http://www.utoronto.ca/emililab/ Andrew Emili]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Proteomics, functional genomics, bioinformatics, mass spectrometry
[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Proteomics, transcription regulation
[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]	Biochemistry	Molecular chapersones
[http://hugheslab.med.utoronto.ca/ Tim Hughes]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Functional genomics using gene expression microarrays
[http://pawsonlab.mshri.on.ca/ Tony Pawson]	Samuel Lunenfeld Research Institute	Cell signaling, protein interaction domains
[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]	Ontario Cancer Institute	X-ray crystallography
[http://www.tcag.ca/scherer/ Steve Scherer]	Hospital for Sick Children @ MaRS, The Centre for Applied Genomics	Human genetics
[http://www.wlstanfordlab.com/ William Stanford]	Institute of Biomaterials and Biomedical Engineering	Mouse mutants, stem cells
[http://www.mshri.on.ca/tyers/ Mike Tyers]	Samuel Lunenfeld Research Institute	Cell division in yeast, proteomics, interaction databases
[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]	Samuel Lunenfeld Research Institute	Protein kinases, DNA microarrays
[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]	Samuel Lunenfeld Research Institute	TGF-beta pathway, protein interaction networks
[http://bigten.med.utoronto.ca Christopher Yip]	Institute of Biomaterials and Biomedical Engineering	Single molecule imaging, protein assembly
Biostats and epidemiology
[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]	Samuel Lunenfeld Research Institute	Statistical genetics, microarray analysis
[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]	Hospital for Sick Children	Genetic epidemiology, microarray analysis
[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]	Samuel Lunenfeld Research Institute	Statistical genetics and cancer
Bioethics
[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]	Joint Centre for Bioethics	Genomics and global health
Centres
[http://www.ccb.sickkids.ca/ Centre for Computational Biology]	Hospital for Sick Children	Support and services
[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]	SLRI, UHN, SickKids, St. Michael's	Mouse phenogenomics
[http://www.cmhd.ca/ Centre for Modeling Human Disease]	Centre for Phenogenomics	Gene trap database
[http://www.crio.on.ca/ Cancer Research Institute of Ontario]	MaRS	Coming soon

York University

[http://www.cs.yorku.ca/~datta/ Suprakash Datta]	Computer Science	Genomic signal processing
[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]	Mathematics and Statistics	Microarray analysis
[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]	Computer Science	Databases, algorithms
[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]	Mathematics and Statistics	Protein structure

Sites

See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],BR organized by Boris Steipe, for an Ontario-wide list.	attachment:CBIO_Logo_Name.gif
See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],BR organized by Francis Ouellette, for a Canada-wide list.	attachment:bioinfoca.jpg

Companies

Bioinformatics
Unleashed Informatics	http://unleashedinformatics.com/\|\|200 Elm Street	Bioinformatics databases e.g. BIND, SeqHound
Benetech	http://www.benetech.com/\|\|180 Bloor St. W. Suite 500	Clinical software, LIMS
cStar Technologies	http://www.cstartech.com/\|\|1122 Finch Ave. W.	Wireless sample tracking
Clinical informatics
McDougall Scientific	http://www.mcd-sci.on.ca\|\|789 Don Mills Rd. Suite 305	Clinical statistical analysis, data management
Medical Databanks	http://www.medicaldatabanks.com/\|\|880 Ellesmere Rd., 3rd Floor	Clinical research, data management
RamSoft	http://www.ramsoft.biz/\|\|243 College Street, Suite 100	Medical imaging software
Chemiinformatics
Advanced Chemistry Development	https://www.acdlabs.com/\|\|110 Yonge Street, 14th floor	Chemistry software
SimBioSys	http://www.simbiosys.ca/\|\|135 Queen's Plate Drive Unit 520	Computational chemistry, docking
Biomedical graphics
AXS Biomedical Animation Studio	http://axs3d.com/\|\|MaRS building	Biomedical 3D animation
Genomics
ChondroGene	http://www.chondrogene.com/\|\|800 Petrolia Road (401 & Keele)	Molecular diagnostics
CombiMatrix	http://www.combimatrix.com/\|\|MaRS\|\|Custom DNA microarrays
Tm Bioscience	http://www.tmbioscience.com/\|\|439 University Ave, Suite 900	DNA-based diagnostics
Proteomics
MDS Sciex	http://www.mdssciex.com\|\|71 Four Valley Drive, Concord, ON	Mass spectrometry instruments/software
Biotech hubs
MaRS Discovery District (Medical and Related Services)	http://www.marsdd.com/\|\|MaRS building	Biotechnology hub

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+Banting and Best has journal club on Tuesdays at 12:30pm and seminars on Friday at 12:30pm. TDCCBR has seminars Fridays at 1pm in the  red room. The Hughes lab genomics journal club is at 4pm Wednesdays. Medical Genetics invited speaker seminars are at 4pm Mondays and student seminars are at 3pm Tuesdays.
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-||||||||<(>'''Mainly computational'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly computational||||||<style="background-color: #E0E0FF;"> ||
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-||||||||<(>'''Mainly wet lab'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly wet lab||||||<style="background-color: #E0E0FF;"> ||
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+||[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Proteomics, transcription regulation||
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+||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography||
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-||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography||
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+||[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]||Samuel Lunenfeld Research Institute||TGF-beta pathway, protein interaction networks||
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-||||||||<(>'''Biostats and epidemiology'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biostats and epidemiology||||||<style="background-color: #E0E0FF;"> ||
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-||||||||<(>'''Bioethics'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioethics||||||<style="background-color: #E0E0FF;"> ||
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-||||||||<(>'''Centres'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Centres||||||<style="background-color: #E0E0FF;"> ||
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-||[http://www.yorku.ca/mkant/ Mariana Kant]||Computer Science||Databases, algorithms||
+||[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]||Computer Science||Databases, algorithms||
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-||||||||<(>'''Bioinformatics'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioinformatics||||||<style="background-color: #E0E0FF;"> ||
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-||||||||<(>'''Chemiinformatics'''||
+||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS||
||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Clinical informatics||||||<style="background-color: #E0E0FF;"> ||
||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management||
||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management||
||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Chemiinformatics||||||<style="background-color: #E0E0FF;"> ||
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-||||||||<(>'''Biomedical graphics'''||
+||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biomedical graphics||||||<style="background-color: #E0E0FF;"> ||
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-||UofT Biomedical Communications program||http://www.bmc.med.utoronto.ca/BMC/||UofT MSB||M.Sc. program||
||||||||<(>'''Genomics'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Genomics||||||<style="background-color: #E0E0FF;"> ||
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-||||||||<(>'''General'''||
+||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Proteomics||||||<style="background-color: #E0E0FF;"> ||
||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biotech hubs||||||<style="background-color: #E0E0FF;"> ||