|
Size: 12644
Comment:
|
Size: 16213
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 1: | Line 1: |
| = Toronto Computational Biology Seminars = | #acl All:read This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at http://www.compbio.utoronto.ca/ which has more up to date information than this site. |
| Line 3: | Line 4: |
| We maintain an up to date list of [:Seminars:computational biology relevant seminars in Toronto]. You can subscribe to the page to get e-mail alerts whenever a new seminar is added, or you can subscribe to the RSS feed for this website at the RecentChanges page. | = Seminars = An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar). |
| Line 6: | Line 8: |
| * [http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine] * [http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments * [http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry] * [http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science] * [http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine] * [http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics] * [http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments] |
|
| Line 14: | Line 9: |
| Banting and Best has journal club on Tuesdays at 12:30pm and seminars on Friday at 12:30pm. TDCCBR has seminars Fridays at 1pm in the red room. The Hughes lab genomics journal club is at 4pm Wednesdays. Medical Genetics invited speaker seminars are at 4pm Mondays and student seminars are at 3pm Tuesdays. We also maintain an ["Events"] page, for interesting computational related events. |
* [[http://cettesemaine.utoronto.ca/|Cette Semaine]] * [[http://www.utoronto.ca/reg/notices_main.pl|University of Toronto Web Notice System]] maintains seminars for a few departments * [[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year|Chemistry]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year|Computer Science]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year|Medicine]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year|Statistics]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year|multiple departments]] * [[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML|Statistical methods for genomics at SLRI]] * [[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/|Centre for Mathematical Medicine seminars]] |
| Line 19: | Line 20: |
A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page. A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page. |
A [[Conferences|list of conferences]] that members of the Bader lab will attend or have attended is on the [[Conferences]] page. |
| Line 25: | Line 23: |
| The University of Toronto [[Courses|offers a number of courses and programs]] in computational biology. | |
| Line 26: | Line 25: |
| The University of Toronto [:Courses:offers a number of courses and programs] in computational biology. | Seneca College also offers a [[http://bioinformatics.senecac.on.ca/|bioinformatics program]]. |
| Line 28: | Line 27: |
| Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program]. | The University of Waterloo [[http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml|undergraduate bioinformatics co-op program]] and [[http://monod.uwaterloo.ca/|bioinformatics research group]]. |
| Line 31: | Line 30: |
| == University of Toronto == ||<#e0e0ff style="font-weight: bold; text-align: center;">Mainly computational ||||||<#e0e0ff style="text-align: center;"> || ||[[http://baderlab.org|Gary Bader]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science ||Biomolecular interaction networks and pathways, molecular profiles, cancer || ||[[http://www.oicr.on.ca/research/batada.htm|Nizar Batada]] ||Ontario Institute for Cancer Research ||Epigenetics, noncoding RNA, genomics || ||[[http://www.cs.toronto.edu/~bonner/|Anthony Bonner]] ||Computer Science ||Computational biology algorithms, machine learning || ||[[http://www.cs.toronto.edu/~brudno/|Michael Brudno]] ||Computer Science, Donnelly Centre for Cellular and Biomedical Research ||Computational biology algorithms || ||[[http://ashercutter.net/|Asher Cutter]] ||Ecology & Evolutionary Biology ||Evolutionary genetics || ||[[http://biochemistry.utoronto.ca/chan/bch.html|Hue-Sun Chan]] ||Biochemistry, Medical Genetics ||Computational protein folding || ||[[http://www.psi.toronto.edu/|Brendan Frey]] ||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research ||Bayesian networks, machine learning algorithms || ||[[http://www.cs.toronto.edu/~juris/|Igor Jurisica]] ||Ontario Cancer Institute @ MaRS, Computer Science ||Cancer informatics || ||[[http://www.kimlab.org/|Philip Kim]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science ||Biological networks, genomics, protein structure and function || ||[[http://www.cs.toronto.edu/~lilien/|Ryan Lilien]] ||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best ||Computational structural biology || ||[[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62|Radhakrishnan Mahadevan]] ||Chemical Engineering, IBBME ||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis || ||[[http://www.utm.utoronto.ca/~mcmillen/|David McMillen]] ||UofT, Mississauga ||Quantitive biology, cell system simulation || ||[[http://www.psi.toronto.edu/~quaid/|Quaid Morris]] ||Donnelly Centre for Cellular and Biomedical Research, Computer Science ||Machine learning algorithms || ||[[http://labs.eeb.utoronto.ca/moses/|Alan Moses]] ||Cell and Systems Biology, Computer Science ||Sequence analysis, evolution || ||[[http://www.oicr.on.ca/aboutOicr_Staff.htm|Francis Ouellette]] ||Ontario Institute of Cancer Research ||Databases, gene finding || ||[[http://www.biochemistry.utoronto.ca/parkinson/lab/|John Parkinson]] ||Hospital for Sick Children @ MaRS, Medical Genetics ||Comparative genomics, cell system simulation || ||[[http://biochemistry.utoronto.ca/pomes/bch.html|Regis Pomes]] ||Hospital for Sick Children ||Molecular dynamics simulations of proteins || ||[[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab|Nicholas Provart]] ||Cell and Systems Biology ||Arabidopsis thaliana gene expression analysis || ||[[http://biochemistry.utoronto.ca/steipe/|Boris Steipe]] ||Biochemistry, Medical Genetics ||Structural bioinformatics, protein engineering || ||[[http://www.cs.toronto.edu/~roweis/|Sam Roweis]] ||Computer Science ||Machine learning, Analysis of large datasets || ||[[http://www.uhnresearch.ca/labs/tillier/home.htm|Elisabeth Tillier]] ||University Health Network @ MaRS ||Molecular evolution || ||[[http://www.mie.utoronto.ca/staff/profiles/thodoros/|Thodoros Topaloglou]] ||Mechanical and Industrial Engineering ||Data management || ||[[http://biochemistry.utoronto.ca/wodak/bch.html|Shoshana Wodak]] ||Hospital for Sick Children, Medical Genetics ||Transcription factor-DNA binding, protein docking and engineering || ||[[http://www.utoronto.ca/zhanglab/|Zhaolei Zhang]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Comparative genomics, evolution, regulatory element prediction || ||<#e0e0ff style="font-weight: bold; text-align: center;">Mainly wet lab ||||||<#e0e0ff style="text-align: center;"> || ||[[http://www.utoronto.ca/andrewslab/|Brenda Andrews]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Genetic and physical interactions in yeast || ||[[http://www.utoronto.ca/boonelab/|Charlie Boone]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Genetic and physical interactions in yeast || ||[[http://lambda.med.utoronto.ca/Davidson/|Alan Davidson]] ||Biochemistry, Medical Genetics ||Protein folding, protein interactions || ||[[http://www.ecf.utoronto.ca/~sdavies/|Stephen Davies]] ||Institute for Biomaterials and Biomedical Engineering ||Genetic ciruits, DNA computing || ||[[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/|David Guttman]] ||Cell and Systems Biology ||Comparative and evolutionary genomics, molecular evolution || ||[[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Proteomics, functional genomics, bioinformatics, mass spectrometry || ||[[http://chemogenomics.med.utoronto.ca/|Guri Giaever]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Chemical genomics/genetics || ||[[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM|Jack Greenblatt]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Proteomics, transcription regulation || ||[[http://biochemistry.utoronto.ca/houry/Labpage/index.html|Walid Houry]] ||Biochemistry ||Molecular chapersones || ||[[http://hugheslab.med.utoronto.ca/|Tim Hughes]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Functional genomics using gene expression microarrays || ||[[http://chemogenomics.med.utoronto.ca/|Corey Nislow]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Chemical genomics/genetics || ||[[http://pawsonlab.mshri.on.ca/|Tony Pawson]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Cell signaling, protein interaction domains || ||[[http://xtal.oci.utoronto.ca/prive/index.html|Gil Privé]] ||Ontario Cancer Institute ||X-ray crystallography || ||[[http://www.tcag.ca/scherer/|Steve Scherer]] ||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics ||Human genetics || ||[[http://www.utoronto.ca/cancyto/|Jeremy Squire]] ||Princess Margaret Hospital ||Microarrays and cancer || ||[[http://www.wlstanfordlab.com/|William Stanford]] ||Institute of Biomaterials and Biomedical Engineering ||Mouse mutants, stem cells || ||[[http://individual.utoronto.ca/ktruong/|Kevin Truong]] ||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering ||Protein engineering, bioinformatics || ||[[http://www.mshri.on.ca/tyers/|Mike Tyers]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Cell division in yeast, proteomics, interaction databases || ||[[http://kinase.uhnres.utoronto.ca/|Jim Woodgett]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Protein kinases, DNA microarrays || ||[[http://www.mshri.on.ca/bios/Wrana.html|Jeff Wrana]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||TGF-beta pathway, protein interaction networks || ||[[http://bigten.med.utoronto.ca|Christopher Yip]] ||Institute of Biomaterials and Biomedical Engineering ||Single molecule imaging, protein assembly || ||<#e0e0ff style="font-weight: bold; text-align: center;">Biostats and epidemiology ||||||<#e0e0ff style="text-align: center;"> || ||[[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph|Joseph Beyene]] ||Hospital for Sick Children ||Interest in gene expression microarray analysis || ||[[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais|Laurent Briollais]] ||Samuel Lunenfeld Research Institute ||Genetic interactions, graphical models || ||[[http://www.mshri.on.ca/mitacs/members/profiles.html|Shelley Bull]] ||Samuel Lunenfeld Research Institute ||Statistical genetics, microarray analysis || ||[[http://142.150.180.17/faculty_template.asp?GetFile=GCelia|Celia Greenwood]] ||Hospital for Sick Children ||Genetic epidemiology, microarray analysis || ||[[http://fisher.utstat.toronto.edu/~rafal/welcome.html|Rafal Kustra]] ||Public Health Sciences ||Mining large datasets, microarray analysis || ||[[http://www.mshri.on.ca/bios/Mclaughlin.html|John McLaughlin]] ||Samuel Lunenfeld Research Institute ||Statistical genetics and cancer || ||[[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094|David Tritchler]] ||Princess Margaret Hospital ||Interest in gene expression microarray analysis || ||<#e0e0ff style="font-weight: bold; text-align: center;">Bioethics ||||||<#e0e0ff style="text-align: center;"> || ||[[http://www.utoronto.ca/jcb/about/singer.htm|Peter Singer]] ||Joint Centre for Bioethics ||Genomics and global health || ||<#e0e0ff style="font-weight: bold; text-align: center;">Centres ||||||<#e0e0ff style="text-align: center;"> || ||[[http://www.ccb.sickkids.ca/|Centre for Computational Biology]] ||Hospital for Sick Children ||Support and services || ||[[http://www.phenogenomics.ca|Toronto Centre for Phenogenomics]] ||SLRI, UHN, !SickKids, St. Michael's ||Mouse phenogenomics || ||[[http://www.cmhd.ca/|Centre for Modeling Human Disease]] ||Centre for Phenogenomics ||Gene trap database || ||[[http://www.ehealthinnovation.org/|Centre for Global eHealth Innovation]] ||University Health Network, University of Toronto ||eHealth || ||[[http://www.ocbn.ca/|Ontario Cancer Biomarker Network]] ||MaRS ||Cancer Biomarkers || ||[[http://www.crio.on.ca/|Cancer Research Institute of Ontario]] ||MaRS ||Coming soon || ||[[http://www.fields.utoronto.ca/programs/scientific/CMM/|Centre for Mathematical Medicine]] ||Fields Institute ||Medical Applications of Math || |
|
| Line 32: | Line 97: |
| == University of Toronto == ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly computational||||||<style="background-color: #E0E0FF;"> || ||[http://baderlab.org Gary Bader]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Biomolecular interaction networks and pathways|| ||[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]||Computer Science||Computational biology algorithms, machine learning|| ||[http://www.cs.toronto.edu/~brudno/ Michael Brudno]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]||Biochemistry, Medical Genetics||Computational protein folding|| ||[http://www.psi.toronto.edu/ Brendan Frey]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[http://www.blueprint.org Chris Hogue]||Biochemistry||Molecular interaction database, pathway simulation, protein folding|| ||[http://www.cs.toronto.edu/~juris/ Igor Jurisica]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[http://www.psi.toronto.edu/~quaid/ Quaid Morris]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparitive genomics, cell system simulation|| ||[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]||Botany||Arabidopsis thaliana gene expression analysis|| ||[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering|| ||[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]||University Health Network @ MaRS||Molecular evolution|| ||[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]||Mechanical and Industrial Engineering||Data management|| ||[http://www.sickkids.on.ca/research/custom/wodak.asp Shoshana Wodak]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering|| ||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comarative genomics, evolution, regulatory element prediction|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly wet lab||||||<style="background-color: #E0E0FF;"> || ||[http://www.utoronto.ca/boonelab/ Charlie Boone]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]||Biochemistry, Medical Genetics||Protein folding, protein interactions|| ||[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]||Botany||Comparative and evolutionary genomics, molecular evolution|| ||[http://www.utoronto.ca/emililab/ Andrew Emili]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation|| ||[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]||Biochemistry||Molecular chapersones|| ||[http://hugheslab.med.utoronto.ca/ Tim Hughes]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays|| ||[http://pawsonlab.mshri.on.ca/ Tony Pawson]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains|| ||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography|| ||[http://www.tcag.ca/scherer/ Steve Scherer]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics|| ||[http://www.wlstanfordlab.com/ William Stanford]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[http://www.mshri.on.ca/tyers/ Mike Tyers]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases|| ||[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays|| ||[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks|| ||[http://bigten.med.utoronto.ca Christopher Yip]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biostats and epidemiology||||||<style="background-color: #E0E0FF;"> || ||[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioethics||||||<style="background-color: #E0E0FF;"> || ||[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]||Joint Centre for Bioethics||Genomics and global health|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Centres||||||<style="background-color: #E0E0FF;"> || ||[http://www.ccb.sickkids.ca/ Centre for Computational Biology]||Hospital for Sick Children||Support and services|| ||[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics|| ||[http://www.cmhd.ca/ Centre for Modeling Human Disease]||Centre for Phenogenomics||Gene trap database|| ||[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]||University Health Network, University of Toronto||eHealth|| ||[http://www.crio.on.ca/ Cancer Research Institute of Ontario]||MaRS||Coming soon|| |
|
| Line 82: | Line 99: |
| ||[[http://www.cs.yorku.ca/~datta/|Suprakash Datta]] ||Computer Science ||Genomic signal processing || ||[[http://www.math.yorku.ca/~jgrigull/|Jörg Grigull]] ||Mathematics and Statistics ||Microarray analysis || ||[[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument|Mariana Kant]] ||Computer Science ||Databases, algorithms || ||[[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html|Walter Whiteley]] ||Mathematics and Statistics ||Protein structure || |
|
| Line 83: | Line 104: |
| ||[http://www.cs.yorku.ca/~datta/ Suprakash Datta]||Computer Science||Genomic signal processing|| ||[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]||Mathematics and Statistics||Microarray analysis|| ||[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]||Computer Science||Databases, algorithms|| ||[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]||Mathematics and Statistics||Protein structure|| |
|
| Line 89: | Line 106: |
| ||See the [[http://www.torontobiotech.org/|Toronto Biotechnology Initiative]]||<style="text-align: center;"> || ||See the [[http://cbio.ca/|Computational Biology Institute of Ontario]] [[http://cbio.ca/community.html|community website]],<<BR>> organized by Boris Steipe, for an Ontario-wide list. ||<style="text-align: center;"> {{attachment:CBIO_Logo_Name.gif}} || ||See the [[http://bioinformatics.ca/|bioinformatics.ca]] [[http://bioinformatics.ca/bioinformatics_resources/people/|community website]],<<BR>> organized by Francis Ouellette, for a Canada-wide list. ||<style="text-align: center;"> {{attachment:bioinfoca.jpg}} || ||See the [[http://www.gchelpdesk.ualberta.ca/|Canadian Bioinformatics Help Desk]] for help with bioinformatics tools || {{attachment:helpdesk.jpg}} || |
|
| Line 90: | Line 111: |
| ||See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],[[BR]] organized by Boris Steipe, for an Ontario-wide list.||<style="text-align: center;">attachment:CBIO_Logo_Name.gif|| ||See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],[[BR]] organized by Francis Ouellette, for a Canada-wide list.||<style="text-align: center;">attachment:bioinfoca.jpg|| ||See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools||attachment:helpdesk.jpg|| |
|
| Line 95: | Line 113: |
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioinformatics||||||<style="background-color: #E0E0FF;"> || ||Unleashed Informatics||http://unleashedinformatics.com/||200 Elm Street||Bioinformatics databases e.g. BIND, !SeqHound|| ||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS|| ||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Clinical informatics||||||<style="background-color: #E0E0FF;"> || ||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management|| ||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management|| ||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Chemiinformatics||||||<style="background-color: #E0E0FF;"> || ||Advanced Chemistry Development||https://www.acdlabs.com/||110 Yonge Street, 14th floor||Chemistry software|| ||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biomedical graphics||||||<style="background-color: #E0E0FF;"> || ||AXS Biomedical Animation Studio||http://axs3d.com/||MaRS building||Biomedical 3D animation|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Genomics||||||<style="background-color: #E0E0FF;"> || ||!ChondroGene||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)||Molecular diagnostics|| ||!CombiMatrix||http://www.combimatrix.com/||MaRS||Custom DNA microarrays|| ||Tm Bioscience||http://www.tmbioscience.com/||439 University Ave, Suite 900||DNA-based diagnostics|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Proteomics||||||<style="background-color: #E0E0FF;"> || ||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biotech hubs||||||<style="background-color: #E0E0FF;"> || ||MaRS Discovery District (Medical and Related Services)||http://www.marsdd.com/||MaRS building||Biotechnology hub|| |
||<#e0e0ff style="font-weight: bold; text-align: center;">Bioinformatics ||||||<#e0e0ff style="text-align: center;"> || ||Unleashed Informatics ||http://unleashedinformatics.com/||200 Elm Street ||Bioinformatics databases e.g. BIND, !SeqHound || ||Benetech ||http://www.benetech.com/||180 Bloor St. W. Suite 500 ||Clinical software, LIMS || ||cStar Technologies ||http://www.cstartech.com/||1122 Finch Ave. W. ||Wireless sample tracking || ||<#e0e0ff style="font-weight: bold; text-align: center;">Clinical informatics ||||||<#e0e0ff style="text-align: center;"> || ||!McDougall Scientific ||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305 ||Clinical statistical analysis, data management || ||Medical Databanks ||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor ||Clinical research, data management || ||!RamSoft ||http://www.ramsoft.biz/||243 College Street, Suite 100 ||Medical imaging software || ||<#e0e0ff style="font-weight: bold; text-align: center;">Chemiinformatics ||||||<#e0e0ff style="text-align: center;"> || ||Advanced Chemistry Development ||https://www.acdlabs.com/||110 Yonge Street, 14th floor ||Chemistry software || ||!SimBioSys ||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520 ||Computational chemistry, docking || ||<#e0e0ff style="font-weight: bold; text-align: center;">Biomedical graphics ||||||<#e0e0ff style="text-align: center;"> || ||AXS Biomedical Animation Studio ||http://axs3d.com/||MaRS building ||Biomedical 3D animation || ||<#e0e0ff style="font-weight: bold; text-align: center;">Genomics ||||||<#e0e0ff style="text-align: center;"> || ||!ChondroGene ||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele) ||Molecular diagnostics || ||!CombiMatrix ||http://www.combimatrix.com/||MaRS||Custom DNA microarrays || ||Tm Bioscience ||http://www.tmbioscience.com/||439 University Ave, Suite 900 ||DNA-based diagnostics || ||<#e0e0ff style="font-weight: bold; text-align: center;">Proteomics ||||||<#e0e0ff style="text-align: center;"> || ||MDS Sciex ||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON ||Mass spectrometry instruments/software || ||Infochromics ||http://www.infochromics.com/||MaRS building ||Proteomics data analysis software || ||<#e0e0ff style="font-weight: bold; text-align: center;">Pharmaceutical ||||||<#e0e0ff style="text-align: center;"> || ||Sanofi Pasteur ||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West ||Vaccine development || ||<#e0e0ff style="font-weight: bold; text-align: center;">Biotech hubs ||||||<#e0e0ff style="text-align: center;"> || ||MaRS Discovery District (Medical and Related Services) ||http://www.marsdd.com/||MaRS building ||Biotechnology hub || |
This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at http://www.compbio.utoronto.ca/ which has more up to date information than this site.
Seminars
An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar).
Additional seminar lists:
University of Toronto Web Notice System maintains seminars for a few departments
Conferences
A list of conferences that members of the Bader lab will attend or have attended is on the Conferences page.
Courses
The University of Toronto offers a number of courses and programs in computational biology.
Seneca College also offers a bioinformatics program.
The University of Waterloo undergraduate bioinformatics co-op program and bioinformatics research group.
Toronto Computational Biology Community
University of Toronto
Mainly computational |
|
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science |
Biomolecular interaction networks and pathways, molecular profiles, cancer |
||
Ontario Institute for Cancer Research |
Epigenetics, noncoding RNA, genomics |
||
Computer Science |
Computational biology algorithms, machine learning |
||
Computer Science, Donnelly Centre for Cellular and Biomedical Research |
Computational biology algorithms |
||
Ecology & Evolutionary Biology |
Evolutionary genetics |
||
Biochemistry, Medical Genetics |
Computational protein folding |
||
Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research |
Bayesian networks, machine learning algorithms |
||
Ontario Cancer Institute @ MaRS, Computer Science |
Cancer informatics |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science |
Biological networks, genomics, protein structure and function |
||
Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best |
Computational structural biology |
||
Chemical Engineering, IBBME |
Systems analysis and engineering of biological processes, bacterial metabolic flux analysis |
||
UofT, Mississauga |
Quantitive biology, cell system simulation |
||
Donnelly Centre for Cellular and Biomedical Research, Computer Science |
Machine learning algorithms |
||
Cell and Systems Biology, Computer Science |
Sequence analysis, evolution |
||
Ontario Institute of Cancer Research |
Databases, gene finding |
||
Hospital for Sick Children @ MaRS, Medical Genetics |
Comparative genomics, cell system simulation |
||
Hospital for Sick Children |
Molecular dynamics simulations of proteins |
||
Cell and Systems Biology |
Arabidopsis thaliana gene expression analysis |
||
Biochemistry, Medical Genetics |
Structural bioinformatics, protein engineering |
||
Computer Science |
Machine learning, Analysis of large datasets |
||
University Health Network @ MaRS |
Molecular evolution |
||
Mechanical and Industrial Engineering |
Data management |
||
Hospital for Sick Children, Medical Genetics |
Transcription factor-DNA binding, protein docking and engineering |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Comparative genomics, evolution, regulatory element prediction |
||
Mainly wet lab |
|
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Genetic and physical interactions in yeast |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Genetic and physical interactions in yeast |
||
Biochemistry, Medical Genetics |
Protein folding, protein interactions |
||
Institute for Biomaterials and Biomedical Engineering |
Genetic ciruits, DNA computing |
||
Cell and Systems Biology |
Comparative and evolutionary genomics, molecular evolution |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Proteomics, functional genomics, bioinformatics, mass spectrometry |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Chemical genomics/genetics |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Proteomics, transcription regulation |
||
Biochemistry |
Molecular chapersones |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Functional genomics using gene expression microarrays |
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics |
Chemical genomics/genetics |
||
Samuel Lunenfeld Research Institute, Medical Genetics |
Cell signaling, protein interaction domains |
||
Ontario Cancer Institute |
X-ray crystallography |
||
Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics |
Human genetics |
||
Princess Margaret Hospital |
Microarrays and cancer |
||
Institute of Biomaterials and Biomedical Engineering |
Mouse mutants, stem cells |
||
Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering |
Protein engineering, bioinformatics |
||
Samuel Lunenfeld Research Institute, Medical Genetics |
Cell division in yeast, proteomics, interaction databases |
||
Samuel Lunenfeld Research Institute, Medical Genetics |
Protein kinases, DNA microarrays |
||
Samuel Lunenfeld Research Institute, Medical Genetics |
TGF-beta pathway, protein interaction networks |
||
Institute of Biomaterials and Biomedical Engineering |
Single molecule imaging, protein assembly |
||
Biostats and epidemiology |
|
||
Hospital for Sick Children |
Interest in gene expression microarray analysis |
||
Samuel Lunenfeld Research Institute |
Genetic interactions, graphical models |
||
Samuel Lunenfeld Research Institute |
Statistical genetics, microarray analysis |
||
Hospital for Sick Children |
Genetic epidemiology, microarray analysis |
||
Public Health Sciences |
Mining large datasets, microarray analysis |
||
Samuel Lunenfeld Research Institute |
Statistical genetics and cancer |
||
Princess Margaret Hospital |
Interest in gene expression microarray analysis |
||
Bioethics |
|
||
Joint Centre for Bioethics |
Genomics and global health |
||
Centres |
|
||
Hospital for Sick Children |
Support and services |
||
SLRI, UHN, SickKids, St. Michael's |
Mouse phenogenomics |
||
Centre for Phenogenomics |
Gene trap database |
||
University Health Network, University of Toronto |
eHealth |
||
MaRS |
Cancer Biomarkers |
||
MaRS |
Coming soon |
||
Fields Institute |
Medical Applications of Math |
||
York University
Computer Science |
Genomic signal processing |
|
Mathematics and Statistics |
Microarray analysis |
|
Computer Science |
Databases, algorithms |
|
Mathematics and Statistics |
Protein structure |
Sites
See the Toronto Biotechnology Initiative |
|
See the Computational Biology Institute of Ontario community website, |
|
See the bioinformatics.ca community website, |
|
See the Canadian Bioinformatics Help Desk for help with bioinformatics tools |
|
Companies
Bioinformatics |
|
||
Unleashed Informatics |
http://unleashedinformatics.com/||200 Elm Street |
Bioinformatics databases e.g. BIND, SeqHound |
|
Benetech |
http://www.benetech.com/||180 Bloor St. W. Suite 500 |
Clinical software, LIMS |
|
cStar Technologies |
http://www.cstartech.com/||1122 Finch Ave. W. |
Wireless sample tracking |
|
Clinical informatics |
|
||
McDougall Scientific |
http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305 |
Clinical statistical analysis, data management |
|
Medical Databanks |
http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor |
Clinical research, data management |
|
RamSoft |
http://www.ramsoft.biz/||243 College Street, Suite 100 |
Medical imaging software |
|
Chemiinformatics |
|
||
Advanced Chemistry Development |
https://www.acdlabs.com/||110 Yonge Street, 14th floor |
Chemistry software |
|
SimBioSys |
http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520 |
Computational chemistry, docking |
|
Biomedical graphics |
|
||
AXS Biomedical Animation Studio |
http://axs3d.com/||MaRS building |
Biomedical 3D animation |
|
Genomics |
|
||
ChondroGene |
http://www.chondrogene.com/||800 Petrolia Road (401 & Keele) |
Molecular diagnostics |
|
CombiMatrix |
http://www.combimatrix.com/||MaRS||Custom DNA microarrays |
||
Tm Bioscience |
http://www.tmbioscience.com/||439 University Ave, Suite 900 |
DNA-based diagnostics |
|
Proteomics |
|
||
MDS Sciex |
http://www.mdssciex.com||71 Four Valley Drive, Concord, ON |
Mass spectrometry instruments/software |
|
Infochromics |
http://www.infochromics.com/||MaRS building |
Proteomics data analysis software |
|
Pharmaceutical |
|
||
Sanofi Pasteur |
http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West |
Vaccine development |
|
Biotech hubs |
|
||
MaRS Discovery District (Medical and Related Services) |
http://www.marsdd.com/||MaRS building |
Biotechnology hub |
|