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Toronto Computational Biology Seminars

We maintain an up to date list of [:Seminars:computational biology relevant seminars in Toronto]. You can subscribe to the page to get e-mail alerts whenever a new seminar is added, or you can subscribe to the RSS feed for this website at the RecentChanges page.

Additional seminar lists:

[http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine]
[http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments

Banting and Best has journal club on Tuesdays at 12:30pm and seminars on Friday at 12:30pm. TDCCBR has seminars Fridays at 1pm in the red room. The Hughes lab genomics journal club is at 4pm Wednesdays. Medical Genetics invited speaker seminars are at 4pm Mondays and student seminars are at 3pm Tuesdays.

We also maintain an ["Events"] page, for interesting computational related events.

Conferences

A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page.

A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page.

Courses

The University of Toronto [:Courses:offers a number of courses and programs] in computational biology.

Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program].

Toronto Computational Biology Community

University of Toronto

Mainly computational
[http://baderlab.org Gary Bader]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best	Biomolecular interaction networks and pathways
[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]	Computer Science	Computational biology algorithms, machine learning
[http://www.cs.toronto.edu/~brudno/ Michael Brudno]	Computer Science, Donnelly Centre for Cellular and Biomedical Research	Computational biology algorithms
[http://ashercutter.net/ Asher Cutter]	Ecology & Evolutionary Biology	Evolutionary genetics
[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]	Biochemistry, Medical Genetics	Computational protein folding
[http://www.psi.toronto.edu/ Brendan Frey]	Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research	Bayesian networks, machine learning algorithms
[http://www.blueprint.org Chris Hogue]	Biochemistry	Molecular interaction database, pathway simulation, protein folding
[http://www.cs.toronto.edu/~juris/ Igor Jurisica]	Ontario Cancer Institute @ MaRS, Computer Science	Cancer informatics
[https://www.dartmouth.edu/~lilien/ Ryan Lilien]	Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best	Computational structural biology
[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62 Radhakrishnan Mahadevan]	Chemical Engineering, IBBME	Systems analysis and engineering of biological processes, bacterial metabolic flux analysis
[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]	UofT, Mississauga	Quantitive biology, cell system simulation
[http://www.psi.toronto.edu/~quaid/ Quaid Morris]	Donnelly Centre for Cellular and Biomedical Research, Computer Science	Machine learning algorithms
[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]	Hospital for Sick Children @ MaRS, Medical Genetics	Comparitive genomics, cell system simulation
[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]	Hospital for Sick Children	Molecular dynamics simulations of proteins
[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]	Botany	Arabidopsis thaliana gene expression analysis
[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]	Biochemistry, Medical Genetics	Structural bioinformatics, protein engineering
[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]	University Health Network @ MaRS	Molecular evolution
[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]	Mechanical and Industrial Engineering	Data management
[http://www.sickkids.on.ca/research/custom/wodak.asp Shoshana Wodak]	Hospital for Sick Children, Medical Genetics	Transcription factor-DNA binding, protein docking and engineering
[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Comarative genomics, evolution, regulatory element prediction
Mainly wet lab
[http://www.utoronto.ca/andrewslab/ Brenda Andrews]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Genetic and physical interactions in yeast
[http://www.utoronto.ca/boonelab/ Charlie Boone]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Genetic and physical interactions in yeast
[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]	Biochemistry, Medical Genetics	Protein folding, protein interactions
[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]	Institute for Biomaterials and Biomedical Engineering	Genetic ciruits, DNA computing
[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]	Botany	Comparative and evolutionary genomics, molecular evolution
[http://www.utoronto.ca/emililab/ Andrew Emili]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Proteomics, functional genomics, bioinformatics, mass spectrometry
Guri Giaever
[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Proteomics, transcription regulation
[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]	Biochemistry	Molecular chapersones
[http://hugheslab.med.utoronto.ca/ Tim Hughes]	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Functional genomics using gene expression microarrays
Corey Nislow
[http://pawsonlab.mshri.on.ca/ Tony Pawson]	Samuel Lunenfeld Research Institute, Medical Genetics	Cell signaling, protein interaction domains
[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]	Ontario Cancer Institute	X-ray crystallography
[http://www.tcag.ca/scherer/ Steve Scherer]	Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics	Human genetics
[http://www.utoronto.ca/cancyto/ Jeremy Squire]	Princess Margaret Hospital	Microarrays and cancer
[http://www.wlstanfordlab.com/ William Stanford]	Institute of Biomaterials and Biomedical Engineering	Mouse mutants, stem cells
[http://www.mshri.on.ca/tyers/ Mike Tyers]	Samuel Lunenfeld Research Institute, Medical Genetics	Cell division in yeast, proteomics, interaction databases
[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]	Samuel Lunenfeld Research Institute, Medical Genetics	Protein kinases, DNA microarrays
[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]	Samuel Lunenfeld Research Institute, Medical Genetics	TGF-beta pathway, protein interaction networks
[http://bigten.med.utoronto.ca Christopher Yip]	Institute of Biomaterials and Biomedical Engineering	Single molecule imaging, protein assembly
Biostats and epidemiology
[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph Joseph Beyene]	Hospital for Sick Children	Interest in gene expression microarray analysis
[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]	Samuel Lunenfeld Research Institute	Statistical genetics, microarray analysis
[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]	Hospital for Sick Children	Genetic epidemiology, microarray analysis
[http://fisher.utstat.toronto.edu/~rafal/welcome.html Rafal Kustra]	Public Health Sciences	Mining large datasets, microarray analysis
[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]	Samuel Lunenfeld Research Institute	Statistical genetics and cancer
[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]	Princess Margaret Hospital	Interest in gene expression microarray analysis
Bioethics
[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]	Joint Centre for Bioethics	Genomics and global health
Centres
[http://www.ccb.sickkids.ca/ Centre for Computational Biology]	Hospital for Sick Children	Support and services
[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]	SLRI, UHN, SickKids, St. Michael's	Mouse phenogenomics
[http://www.cmhd.ca/ Centre for Modeling Human Disease]	Centre for Phenogenomics	Gene trap database
[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]	University Health Network, University of Toronto	eHealth
[http://www.ocbn.ca/ Ontario Cancer Biomarker Network]	MaRS	Cancer Biomarkers
[http://www.crio.on.ca/ Cancer Research Institute of Ontario]	MaRS	Coming soon

York University

[http://www.cs.yorku.ca/~datta/ Suprakash Datta]	Computer Science	Genomic signal processing
[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]	Mathematics and Statistics	Microarray analysis
[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]	Computer Science	Databases, algorithms
[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]	Mathematics and Statistics	Protein structure

Sites

See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],BR organized by Boris Steipe, for an Ontario-wide list.	attachment:CBIO_Logo_Name.gif
See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],BR organized by Francis Ouellette, for a Canada-wide list.	attachment:bioinfoca.jpg
See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools	attachment:helpdesk.jpg

Companies

Bioinformatics
Unleashed Informatics	http://unleashedinformatics.com/\|\|200 Elm Street	Bioinformatics databases e.g. BIND, SeqHound
Benetech	http://www.benetech.com/\|\|180 Bloor St. W. Suite 500	Clinical software, LIMS
cStar Technologies	http://www.cstartech.com/\|\|1122 Finch Ave. W.	Wireless sample tracking
Clinical informatics
McDougall Scientific	http://www.mcd-sci.on.ca\|\|789 Don Mills Rd. Suite 305	Clinical statistical analysis, data management
Medical Databanks	http://www.medicaldatabanks.com/\|\|880 Ellesmere Rd., 3rd Floor	Clinical research, data management
RamSoft	http://www.ramsoft.biz/\|\|243 College Street, Suite 100	Medical imaging software
Chemiinformatics
Advanced Chemistry Development	https://www.acdlabs.com/\|\|110 Yonge Street, 14th floor	Chemistry software
SimBioSys	http://www.simbiosys.ca/\|\|135 Queen's Plate Drive Unit 520	Computational chemistry, docking
Biomedical graphics
AXS Biomedical Animation Studio	http://axs3d.com/\|\|MaRS building	Biomedical 3D animation
Genomics
ChondroGene	http://www.chondrogene.com/\|\|800 Petrolia Road (401 & Keele)	Molecular diagnostics
CombiMatrix	http://www.combimatrix.com/\|\|MaRS\|\|Custom DNA microarrays
Tm Bioscience	http://www.tmbioscience.com/\|\|439 University Ave, Suite 900	DNA-based diagnostics
Proteomics
MDS Sciex	http://www.mdssciex.com\|\|71 Four Valley Drive, Concord, ON	Mass spectrometry instruments/software
Infochromics	http://www.infochromics.com/\|\|MaRS building	Proteomics data analysis software
Biotech hubs
MaRS Discovery District (Medical and Related Services)	http://www.marsdd.com/\|\|MaRS building	Biotechnology hub

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+||[http://ashercutter.net/ Asher Cutter]||Ecology & Evolutionary Biology||Evolutionary genetics||
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+||[https://www.dartmouth.edu/~lilien/ Ryan Lilien]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology||
||[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62 Radhakrishnan Mahadevan]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis||
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+||[http://www.utoronto.ca/andrewslab/ Brenda Andrews]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast||
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+||[http://www.utoronto.ca/cancyto/ Jeremy Squire]||Princess Margaret Hospital||Microarrays and cancer||
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-||[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]||Princess Margaret Hospital||Interest in gene expression microarray analysis||
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+||[http://fisher.utstat.toronto.edu/~rafal/welcome.html Rafal Kustra]||Public Health Sciences||Mining large datasets, microarray analysis||
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+||[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]||Princess Margaret Hospital||Interest in gene expression microarray analysis||