Differences between revisions 33 and 63 (spanning 30 versions)

This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at https://bioinformatics.utoronto.ca/ which has more up to date information than this site.

Seminars

Cette Semaine
University of Toronto Web Notice System maintains seminars for a few departments
Statistical methods for genomics at SLRI
Centre for Mathematical Medicine seminars

Conferences

A list of conferences that members of the Bader lab will attend or have attended is on the Conferences page.

Courses

The University of Toronto offers a number of courses and programs in computational biology.

Seneca College also offers a bioinformatics program.

The University of Waterloo undergraduate bioinformatics co-op program and bioinformatics research group.

Toronto Computational Biology Community

University of Toronto

Mainly computational
Gary Bader	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science	Biomolecular interaction networks and pathways, molecular profiles, cancer
Nizar Batada	Ontario Institute for Cancer Research	Epigenetics, noncoding RNA, genomics
Anthony Bonner	Computer Science	Computational biology algorithms, machine learning
Michael Brudno	Computer Science, Donnelly Centre for Cellular and Biomedical Research	Computational biology algorithms
Asher Cutter	Ecology & Evolutionary Biology	Evolutionary genetics
Hue-Sun Chan	Biochemistry, Medical Genetics	Computational protein folding
Brendan Frey	Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research	Bayesian networks, machine learning algorithms
Igor Jurisica	Ontario Cancer Institute @ MaRS, Computer Science	Cancer informatics
Philip Kim	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science	Biological networks, genomics, protein structure and function
Ryan Lilien	Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best	Computational structural biology
Radhakrishnan Mahadevan	Chemical Engineering, IBBME	Systems analysis and engineering of biological processes, bacterial metabolic flux analysis
David McMillen	UofT, Mississauga	Quantitive biology, cell system simulation
Quaid Morris	Donnelly Centre for Cellular and Biomedical Research, Computer Science	Machine learning algorithms
Alan Moses	Cell and Systems Biology, Computer Science	Sequence analysis, evolution
Francis Ouellette	Ontario Institute of Cancer Research	Databases, gene finding
John Parkinson	Hospital for Sick Children @ MaRS, Medical Genetics	Comparative genomics, cell system simulation
Regis Pomes	Hospital for Sick Children	Molecular dynamics simulations of proteins
Nicholas Provart	Cell and Systems Biology	Arabidopsis thaliana gene expression analysis
Boris Steipe	Biochemistry, Medical Genetics	Structural bioinformatics, protein engineering
Sam Roweis	Computer Science	Machine learning, Analysis of large datasets
Elisabeth Tillier	University Health Network @ MaRS	Molecular evolution
Thodoros Topaloglou	Mechanical and Industrial Engineering	Data management
Shoshana Wodak	Hospital for Sick Children, Medical Genetics	Transcription factor-DNA binding, protein docking and engineering
Zhaolei Zhang	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Comparative genomics, evolution, regulatory element prediction
Mainly wet lab
Brenda Andrews	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Genetic and physical interactions in yeast
Charlie Boone	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Genetic and physical interactions in yeast
Alan Davidson	Biochemistry, Medical Genetics	Protein folding, protein interactions
Stephen Davies	Institute for Biomaterials and Biomedical Engineering	Genetic ciruits, DNA computing
David Guttman	Cell and Systems Biology	Comparative and evolutionary genomics, molecular evolution
Andrew Emili	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Proteomics, functional genomics, bioinformatics, mass spectrometry
Guri Giaever	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Chemical genomics/genetics
Jack Greenblatt	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Proteomics, transcription regulation
Walid Houry	Biochemistry	Molecular chapersones
Tim Hughes	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Functional genomics using gene expression microarrays
Corey Nislow	Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics	Chemical genomics/genetics
Tony Pawson	Samuel Lunenfeld Research Institute, Medical Genetics	Cell signaling, protein interaction domains
Gil Privé	Ontario Cancer Institute	X-ray crystallography
Steve Scherer	Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics	Human genetics
Jeremy Squire	Princess Margaret Hospital	Microarrays and cancer
William Stanford	Institute of Biomaterials and Biomedical Engineering	Mouse mutants, stem cells
Kevin Truong	Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering	Protein engineering, bioinformatics
Mike Tyers	Samuel Lunenfeld Research Institute, Medical Genetics	Cell division in yeast, proteomics, interaction databases
Jim Woodgett	Samuel Lunenfeld Research Institute, Medical Genetics	Protein kinases, DNA microarrays
Jeff Wrana	Samuel Lunenfeld Research Institute, Medical Genetics	TGF-beta pathway, protein interaction networks
Christopher Yip	Institute of Biomaterials and Biomedical Engineering	Single molecule imaging, protein assembly
Biostats and epidemiology
Joseph Beyene	Hospital for Sick Children	Interest in gene expression microarray analysis
Laurent Briollais	Samuel Lunenfeld Research Institute	Genetic interactions, graphical models
Shelley Bull	Samuel Lunenfeld Research Institute	Statistical genetics, microarray analysis
Celia Greenwood	Hospital for Sick Children	Genetic epidemiology, microarray analysis
Rafal Kustra	Public Health Sciences	Mining large datasets, microarray analysis
John McLaughlin	Samuel Lunenfeld Research Institute	Statistical genetics and cancer
David Tritchler	Princess Margaret Hospital	Interest in gene expression microarray analysis
Bioethics
Peter Singer	Joint Centre for Bioethics	Genomics and global health
Centres
Centre for Computational Biology	Hospital for Sick Children	Support and services
Toronto Centre for Phenogenomics	SLRI, UHN, SickKids, St. Michael's	Mouse phenogenomics
Centre for Modeling Human Disease	Centre for Phenogenomics	Gene trap database
Centre for Global eHealth Innovation	University Health Network, University of Toronto	eHealth
Ontario Cancer Biomarker Network	MaRS	Cancer Biomarkers
Cancer Research Institute of Ontario	MaRS	Coming soon
Centre for Mathematical Medicine	Fields Institute	Medical Applications of Math

York University

Suprakash Datta	Computer Science	Genomic signal processing
Jörg Grigull	Mathematics and Statistics	Microarray analysis
Mariana Kant	Computer Science	Databases, algorithms
Walter Whiteley	Mathematics and Statistics	Protein structure

Sites

See the Toronto Biotechnology Initiative
See the Computational Biology Institute of Ontario community website, organized by Boris Steipe, for an Ontario-wide list.
See the bioinformatics.ca community website, organized by Francis Ouellette, for a Canada-wide list.
See the Canadian Bioinformatics Help Desk for help with bioinformatics tools

Companies

Bioinformatics
Unleashed Informatics	http://unleashedinformatics.com/\|\|200 Elm Street	Bioinformatics databases e.g. BIND, SeqHound
Benetech	http://www.benetech.com/\|\|180 Bloor St. W. Suite 500	Clinical software, LIMS
cStar Technologies	http://www.cstartech.com/\|\|1122 Finch Ave. W.	Wireless sample tracking
Clinical informatics
McDougall Scientific	http://www.mcd-sci.on.ca\|\|789 Don Mills Rd. Suite 305	Clinical statistical analysis, data management
Medical Databanks	http://www.medicaldatabanks.com/\|\|880 Ellesmere Rd., 3rd Floor	Clinical research, data management
RamSoft	http://www.ramsoft.biz/\|\|243 College Street, Suite 100	Medical imaging software
Chemiinformatics
Advanced Chemistry Development	https://www.acdlabs.com/\|\|110 Yonge Street, 14th floor	Chemistry software
SimBioSys	http://www.simbiosys.ca/\|\|135 Queen's Plate Drive Unit 520	Computational chemistry, docking
Biomedical graphics
AXS Biomedical Animation Studio	http://axs3d.com/\|\|MaRS building	Biomedical 3D animation
Genomics
ChondroGene	http://www.chondrogene.com/\|\|800 Petrolia Road (401 & Keele)	Molecular diagnostics
CombiMatrix	http://www.combimatrix.com/\|\|MaRS\|\|Custom DNA microarrays
Tm Bioscience	http://www.tmbioscience.com/\|\|439 University Ave, Suite 900	DNA-based diagnostics
Proteomics
MDS Sciex	http://www.mdssciex.com\|\|71 Four Valley Drive, Concord, ON	Mass spectrometry instruments/software
Infochromics	http://www.infochromics.com/\|\|MaRS building	Proteomics data analysis software
Pharmaceutical
Sanofi Pasteur	http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85\|\|1755 Steeles Avenue West	Vaccine development
Biotech hubs
MaRS Discovery District (Medical and Related Services)	http://www.marsdd.com/\|\|MaRS building	Biotechnology hub

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-Deletions are marked like this.
+Additions are marked like this.
 Line 1:
-= Toronto Computational Biology Seminars =
+#acl All:read
This page focuses on the Toronto Computational Biology community.  A central computational biology site has been set up at https://bioinformatics.utoronto.ca/ which has more up to date information than this site.
-Line 3:
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-We maintain an up to date list of [:Seminars:computational biology relevant seminars in Toronto]. You can subscribe to the page to get e-mail alerts whenever a new seminar is added, or you can subscribe to the RSS feed for this website at the RecentChanges page.
+= Seminars =
-Line 5:
+Line 6:
-Additional seminar lists:
 * [http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine]
 * [http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments]

Banting and Best has journal club on Tuesdays at 12:30pm and seminars on Friday at 12:30pm. TDCCBR has seminars Fridays at 1pm in the  red room. The Hughes lab genomics journal club is at 4pm Wednesdays. Medical Genetics invited speaker seminars are at 4pm Mondays and student seminars are at 3pm Tuesdays.

We also maintain an ["Events"] page, for interesting computational related events.
+ * [[http://cettesemaine.utoronto.ca/|Cette Semaine]]
 * [[http://www.utoronto.ca/reg/notices_main.pl|University of Toronto Web Notice System]] maintains seminars for a few departments
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year|Chemistry]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year|Computer Science]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year|Medicine]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year|Statistics]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year|multiple departments]]
 * [[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML|Statistical methods for genomics at SLRI]]
 * [[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/|Centre for Mathematical Medicine seminars]]
-Line 19:
+Line 17:
-A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page.

A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page.
+A [[Conferences|list of conferences]] that members of the Bader lab will attend or have attended is on the [[Conferences]] page.
-Line 25:
+Line 20:
+The University of Toronto [[Courses|offers a number of courses and programs]] in computational biology.
-Line 26:
+Line 22:
-The University of Toronto [:Courses:offers a number of courses and programs] in computational biology.
+Seneca College also offers a [[http://bioinformatics.senecac.on.ca/|bioinformatics program]].
-Line 28:
+Line 24:
-Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program].
+The University of Waterloo [[http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml|undergraduate bioinformatics co-op program]] and [[http://monod.uwaterloo.ca/|bioinformatics research group]].
-Line 31:
+Line 27:
+== University of Toronto ==
||<#e0e0ff style="font-weight: bold; text-align: center;">Mainly computational ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://baderlab.org|Gary Bader]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science ||Biomolecular interaction networks and pathways, molecular profiles, cancer ||
||[[http://www.oicr.on.ca/research/batada.htm|Nizar Batada]] ||Ontario Institute for Cancer Research ||Epigenetics, noncoding RNA, genomics ||
||[[http://www.cs.toronto.edu/~bonner/|Anthony Bonner]] ||Computer Science ||Computational biology algorithms, machine learning ||
||[[http://www.cs.toronto.edu/~brudno/|Michael Brudno]] ||Computer Science, Donnelly Centre for Cellular and Biomedical Research ||Computational biology algorithms ||
||[[http://ashercutter.net/|Asher Cutter]] ||Ecology & Evolutionary Biology ||Evolutionary genetics ||
||[[http://biochemistry.utoronto.ca/chan/bch.html|Hue-Sun Chan]] ||Biochemistry, Medical Genetics ||Computational protein folding ||
||[[http://www.psi.toronto.edu/|Brendan Frey]] ||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research ||Bayesian networks, machine learning algorithms ||
||[[http://www.cs.toronto.edu/~juris/|Igor Jurisica]] ||Ontario Cancer Institute @ MaRS, Computer Science ||Cancer informatics ||
||[[http://www.kimlab.org/|Philip Kim]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science ||Biological networks, genomics, protein structure and function ||
||[[http://www.cs.toronto.edu/~lilien/|Ryan Lilien]] ||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best ||Computational structural biology ||
||[[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62|Radhakrishnan Mahadevan]] ||Chemical Engineering, IBBME ||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis ||
||[[http://www.utm.utoronto.ca/~mcmillen/|David McMillen]] ||UofT, Mississauga ||Quantitive biology, cell system simulation ||
||[[http://www.psi.toronto.edu/~quaid/|Quaid Morris]] ||Donnelly Centre for Cellular and Biomedical Research, Computer Science ||Machine learning algorithms ||
||[[http://labs.eeb.utoronto.ca/moses/|Alan Moses]] ||Cell and Systems Biology, Computer Science ||Sequence analysis, evolution ||
||[[http://www.oicr.on.ca/aboutOicr_Staff.htm|Francis Ouellette]] ||Ontario Institute of Cancer Research ||Databases, gene finding ||
||[[http://www.biochemistry.utoronto.ca/parkinson/lab/|John Parkinson]] ||Hospital for Sick Children @ MaRS, Medical Genetics ||Comparative genomics, cell system simulation ||
||[[http://biochemistry.utoronto.ca/pomes/bch.html|Regis Pomes]] ||Hospital for Sick Children ||Molecular dynamics simulations of proteins ||
||[[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab|Nicholas Provart]] ||Cell and Systems Biology ||Arabidopsis thaliana gene expression analysis ||
||[[http://biochemistry.utoronto.ca/steipe/|Boris Steipe]] ||Biochemistry, Medical Genetics ||Structural bioinformatics, protein engineering ||
||[[http://www.cs.toronto.edu/~roweis/|Sam Roweis]] ||Computer Science ||Machine learning, Analysis of large datasets ||
||[[http://www.uhnresearch.ca/labs/tillier/home.htm|Elisabeth Tillier]] ||University Health Network @ MaRS ||Molecular evolution ||
||[[http://www.mie.utoronto.ca/staff/profiles/thodoros/|Thodoros Topaloglou]] ||Mechanical and Industrial Engineering ||Data management ||
||[[http://biochemistry.utoronto.ca/wodak/bch.html|Shoshana Wodak]] ||Hospital for Sick Children, Medical Genetics ||Transcription factor-DNA binding, protein docking and engineering ||
||[[http://www.utoronto.ca/zhanglab/|Zhaolei Zhang]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Comparative genomics, evolution, regulatory element prediction ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Mainly wet lab ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://www.utoronto.ca/andrewslab/|Brenda Andrews]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Genetic and physical interactions in yeast ||
||[[http://www.utoronto.ca/boonelab/|Charlie Boone]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Genetic and physical interactions in yeast ||
||[[http://lambda.med.utoronto.ca/Davidson/|Alan Davidson]] ||Biochemistry, Medical Genetics ||Protein folding, protein interactions ||
||[[http://www.ecf.utoronto.ca/~sdavies/|Stephen Davies]] ||Institute for Biomaterials and Biomedical Engineering ||Genetic ciruits, DNA computing ||
||[[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/|David Guttman]] ||Cell and Systems Biology ||Comparative and evolutionary genomics, molecular evolution ||
||[[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Proteomics, functional genomics, bioinformatics, mass spectrometry ||
||[[http://chemogenomics.med.utoronto.ca/|Guri Giaever]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Chemical genomics/genetics ||
||[[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM|Jack Greenblatt]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Proteomics, transcription regulation ||
||[[http://biochemistry.utoronto.ca/houry/Labpage/index.html|Walid Houry]] ||Biochemistry ||Molecular chapersones ||
||[[http://hugheslab.med.utoronto.ca/|Tim Hughes]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Functional genomics using gene expression microarrays ||
||[[http://chemogenomics.med.utoronto.ca/|Corey Nislow]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Chemical genomics/genetics ||
||[[http://pawsonlab.mshri.on.ca/|Tony Pawson]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Cell signaling, protein interaction domains ||
||[[http://xtal.oci.utoronto.ca/prive/index.html|Gil Privé]] ||Ontario Cancer Institute ||X-ray crystallography ||
||[[http://www.tcag.ca/scherer/|Steve Scherer]] ||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics ||Human genetics ||
||[[http://www.utoronto.ca/cancyto/|Jeremy Squire]] ||Princess Margaret Hospital ||Microarrays and cancer ||
||[[http://www.wlstanfordlab.com/|William Stanford]] ||Institute of Biomaterials and Biomedical Engineering ||Mouse mutants, stem cells ||
||[[http://individual.utoronto.ca/ktruong/|Kevin Truong]] ||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering ||Protein engineering, bioinformatics ||
||[[http://www.mshri.on.ca/tyers/|Mike Tyers]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Cell division in yeast, proteomics, interaction databases ||
||[[http://kinase.uhnres.utoronto.ca/|Jim Woodgett]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Protein kinases, DNA microarrays ||
||[[http://www.mshri.on.ca/bios/Wrana.html|Jeff Wrana]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||TGF-beta pathway, protein interaction networks ||
||[[http://bigten.med.utoronto.ca|Christopher Yip]] ||Institute of Biomaterials and Biomedical Engineering ||Single molecule imaging, protein assembly ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Biostats and epidemiology ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph|Joseph Beyene]] ||Hospital for Sick Children ||Interest in gene expression microarray analysis ||
||[[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais|Laurent Briollais]] ||Samuel Lunenfeld Research Institute ||Genetic interactions, graphical models ||
||[[http://www.mshri.on.ca/mitacs/members/profiles.html|Shelley Bull]] ||Samuel Lunenfeld Research Institute ||Statistical genetics, microarray analysis ||
||[[http://142.150.180.17/faculty_template.asp?GetFile=GCelia|Celia Greenwood]] ||Hospital for Sick Children ||Genetic epidemiology, microarray analysis ||
||[[http://fisher.utstat.toronto.edu/~rafal/welcome.html|Rafal Kustra]] ||Public Health Sciences ||Mining large datasets, microarray analysis ||
||[[http://www.mshri.on.ca/bios/Mclaughlin.html|John McLaughlin]] ||Samuel Lunenfeld Research Institute ||Statistical genetics and cancer ||
||[[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094|David Tritchler]] ||Princess Margaret Hospital ||Interest in gene expression microarray analysis ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Bioethics ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://www.utoronto.ca/jcb/about/singer.htm|Peter Singer]] ||Joint Centre for Bioethics ||Genomics and global health ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Centres ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://www.ccb.sickkids.ca/|Centre for Computational Biology]] ||Hospital for Sick Children ||Support and services ||
||[[http://www.phenogenomics.ca|Toronto Centre for Phenogenomics]] ||SLRI, UHN, !SickKids, St. Michael's ||Mouse phenogenomics ||
||[[http://www.cmhd.ca/|Centre for Modeling Human Disease]] ||Centre for Phenogenomics ||Gene trap database ||
||[[http://www.ehealthinnovation.org/|Centre for Global eHealth Innovation]] ||University Health Network, University of Toronto ||eHealth ||
||[[http://www.ocbn.ca/|Ontario Cancer Biomarker Network]] ||MaRS ||Cancer Biomarkers ||
||[[http://www.crio.on.ca/|Cancer Research Institute of Ontario]] ||MaRS ||Coming soon ||
||[[http://www.fields.utoronto.ca/programs/scientific/CMM/|Centre for Mathematical Medicine]] ||Fields Institute ||Medical Applications of Math ||
-Line 32:
+Line 94:
-== University of Toronto ==
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly computational||||||<style="background-color: #E0E0FF;"> ||
||[http://baderlab.org Gary Bader]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Biomolecular interaction networks and pathways||
||[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]||Computer Science||Computational biology algorithms, machine learning||
||[http://www.cs.toronto.edu/~brudno/ Michael Brudno]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms||
||[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]||Biochemistry, Medical Genetics||Computational protein folding||
||[http://www.psi.toronto.edu/ Brendan Frey]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms||
||[http://www.blueprint.org Chris Hogue]||Biochemistry||Molecular interaction database, pathway simulation, protein folding||
||[http://www.cs.toronto.edu/~juris/ Igor Jurisica]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics||
||[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]||UofT, Mississauga||Quantitive biology, cell system simulation||
||[http://www.psi.toronto.edu/~quaid/ Quaid Morris]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms||
||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparitive genomics, cell system simulation||
||[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]||Hospital for Sick Children||Molecular dynamics simulations of proteins||
||[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]||Botany||Arabidopsis thaliana gene expression analysis||
||[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering||
||[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]||University Health Network @ MaRS||Molecular evolution||
||[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]||Mechanical and Industrial Engineering||Data management||
||[http://www.sickkids.on.ca/research/custom/wodak.asp Shoshana Wodak]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering||
||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comarative genomics, evolution, regulatory element prediction||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly wet lab||||||<style="background-color: #E0E0FF;"> ||
||[http://www.utoronto.ca/boonelab/ Charlie Boone]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast||
||[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]||Biochemistry, Medical Genetics||Protein folding, protein interactions||
||[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing||
||[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]||Botany||Comparative and evolutionary genomics, molecular evolution||
||[http://www.utoronto.ca/emililab/ Andrew Emili]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry||
||Guri Giaever|| || ||
||[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation||
||[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]||Biochemistry||Molecular chapersones||
||[http://hugheslab.med.utoronto.ca/ Tim Hughes]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays||
||Corey Nislow|| || ||
||[http://pawsonlab.mshri.on.ca/ Tony Pawson]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains||
||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography||
||[http://www.tcag.ca/scherer/ Steve Scherer]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics||
||[http://www.wlstanfordlab.com/ William Stanford]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells||
||[http://www.mshri.on.ca/tyers/ Mike Tyers]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases||
||[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays||
||[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks||
||[http://bigten.med.utoronto.ca Christopher Yip]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biostats and epidemiology||||||<style="background-color: #E0E0FF;"> ||
||[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph Joseph Beyene]||Hospital for Sick Children||Interest in gene expression microarray analysis||
||[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis||
||[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]||Hospital for Sick Children||Genetic epidemiology, microarray analysis||
||[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer||
||[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]||Princess Margaret Hospital||Interest in gene expression microarray analysis||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioethics||||||<style="background-color: #E0E0FF;"> ||
||[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]||Joint Centre for Bioethics||Genomics and global health||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Centres||||||<style="background-color: #E0E0FF;"> ||
||[http://www.ccb.sickkids.ca/ Centre for Computational Biology]||Hospital for Sick Children||Support and services||
||[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics||
||[http://www.cmhd.ca/ Centre for Modeling Human Disease]||Centre for Phenogenomics||Gene trap database||
||[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]||University Health Network, University of Toronto||eHealth||
||[http://www.ocbn.ca/ Ontario Cancer Biomarker Network]||MaRS||Cancer Biomarkers||
||[http://www.crio.on.ca/ Cancer Research Institute of Ontario]||MaRS||Coming soon||
-Line 87:
+Line 96:
+||[[http://www.cs.yorku.ca/~datta/|Suprakash Datta]] ||Computer Science ||Genomic signal processing ||
||[[http://www.math.yorku.ca/~jgrigull/|Jörg Grigull]] ||Mathematics and Statistics ||Microarray analysis ||
||[[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument|Mariana Kant]] ||Computer Science ||Databases, algorithms ||
||[[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html|Walter Whiteley]] ||Mathematics and Statistics ||Protein structure ||
-Line 88:
+Line 101:
-||[http://www.cs.yorku.ca/~datta/ Suprakash Datta]||Computer Science||Genomic signal processing||
||[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]||Mathematics and Statistics||Microarray analysis||
||[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]||Computer Science||Databases, algorithms||
||[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]||Mathematics and Statistics||Protein structure||
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+Line 103:
+||See the [[http://www.torontobiotech.org/|Toronto Biotechnology Initiative]]||<style="text-align: center;"> ||
||See the [[http://cbio.ca/|Computational Biology Institute of Ontario]] [[http://cbio.ca/community.html|community website]],<<BR>> organized by Boris Steipe, for an Ontario-wide list. ||<style="text-align: center;"> {{attachment:CBIO_Logo_Name.gif}} ||
||See the [[http://bioinformatics.ca/|bioinformatics.ca]] [[http://bioinformatics.ca/bioinformatics_resources/people/|community website]],<<BR>> organized by Francis Ouellette, for a Canada-wide list. ||<style="text-align: center;"> {{attachment:bioinfoca.jpg}} ||
||See the [[http://www.gchelpdesk.ualberta.ca/|Canadian Bioinformatics Help Desk]] for help with bioinformatics tools || {{attachment:helpdesk.jpg}} ||
-Line 95:
+Line 108:
-||See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],[[BR]] organized by Boris Steipe, for an Ontario-wide list.||<style="text-align: center;">attachment:CBIO_Logo_Name.gif||
||See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],[[BR]] organized by Francis Ouellette, for a Canada-wide list.||<style="text-align: center;">attachment:bioinfoca.jpg||
||See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools||attachment:helpdesk.jpg||
-Line 100:
+Line 110:
-||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioinformatics||||||<style="background-color: #E0E0FF;"> ||
||Unleashed Informatics||http://unleashedinformatics.com/||200 Elm Street||Bioinformatics databases e.g. BIND, !SeqHound||
||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS||
||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Clinical informatics||||||<style="background-color: #E0E0FF;"> ||
||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management||
||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management||
||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Chemiinformatics||||||<style="background-color: #E0E0FF;"> ||
||Advanced Chemistry Development||https://www.acdlabs.com/||110 Yonge Street, 14th floor||Chemistry software||
||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biomedical graphics||||||<style="background-color: #E0E0FF;"> ||
||AXS Biomedical Animation Studio||http://axs3d.com/||MaRS building||Biomedical 3D animation||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Genomics||||||<style="background-color: #E0E0FF;"> ||
||!ChondroGene||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)||Molecular diagnostics||
||!CombiMatrix||http://www.combimatrix.com/||MaRS||Custom DNA microarrays||
||Tm Bioscience||http://www.tmbioscience.com/||439 University Ave, Suite 900||DNA-based diagnostics||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Proteomics||||||<style="background-color: #E0E0FF;"> ||
||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software||
||Infochromics||http://www.infochromics.com/||MaRS building||Proteomics data analysis software||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biotech hubs||||||<style="background-color: #E0E0FF;"> ||
||MaRS Discovery District (Medical and Related Services)||http://www.marsdd.com/||MaRS building||Biotechnology hub||
+||<#e0e0ff style="font-weight: bold; text-align: center;">Bioinformatics ||||||<#e0e0ff style="text-align: center;"> ||
||Unleashed Informatics ||http://unleashedinformatics.com/||200 Elm Street ||Bioinformatics databases e.g. BIND, !SeqHound ||
||Benetech ||http://www.benetech.com/||180 Bloor St. W. Suite 500 ||Clinical software, LIMS ||
||cStar Technologies ||http://www.cstartech.com/||1122 Finch Ave. W. ||Wireless sample tracking ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Clinical informatics ||||||<#e0e0ff style="text-align: center;"> ||
||!McDougall Scientific ||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305 ||Clinical statistical analysis, data management ||
||Medical Databanks ||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor ||Clinical research, data management ||
||!RamSoft ||http://www.ramsoft.biz/||243 College Street, Suite 100 ||Medical imaging software ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Chemiinformatics ||||||<#e0e0ff style="text-align: center;"> ||
||Advanced Chemistry Development ||https://www.acdlabs.com/||110 Yonge Street, 14th floor ||Chemistry software ||
||!SimBioSys ||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520 ||Computational chemistry, docking ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Biomedical graphics ||||||<#e0e0ff style="text-align: center;"> ||
||AXS Biomedical Animation Studio ||http://axs3d.com/||MaRS building ||Biomedical 3D animation ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Genomics ||||||<#e0e0ff style="text-align: center;"> ||
||!ChondroGene ||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele) ||Molecular diagnostics ||
||!CombiMatrix ||http://www.combimatrix.com/||MaRS||Custom DNA microarrays ||
||Tm Bioscience ||http://www.tmbioscience.com/||439 University Ave, Suite 900 ||DNA-based diagnostics ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Proteomics ||||||<#e0e0ff style="text-align: center;"> ||
||MDS Sciex ||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON ||Mass spectrometry instruments/software ||
||Infochromics ||http://www.infochromics.com/||MaRS building ||Proteomics data analysis software ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Pharmaceutical ||||||<#e0e0ff style="text-align: center;"> ||
||Sanofi Pasteur ||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West ||Vaccine development ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Biotech hubs ||||||<#e0e0ff style="text-align: center;"> ||
||MaRS Discovery District (Medical and Related Services) ||http://www.marsdd.com/||MaRS building ||Biotechnology hub ||