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Last updated at 2026-07-29 01:57:10
Differences between revisions 51 and 62 (spanning 11 versions)
⇤ ← Revision 51 as of 2007-08-24 23:57:23 →
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← Revision 62 as of 2013-07-02 13:47:07 → ⇥
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Deletions are marked like this. Additions are marked like this.
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This page focuses on the Toronto Computational Biology community. This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at http://www.compbio.utoronto.ca/ which has more up to date information than this site.
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We maintain an up to date list of [:Seminars:computational biology relevant seminars in Toronto]. You can subscribe to the page to get e-mail alerts whenever a new seminar is added, or you can subscribe to the RSS feed for this website at the RecentChanges page.		 An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar).
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 * [http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine]
 * [http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics]
  * [http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments]
 * [http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML Statistical methods for genomics at SLRI]
 * [http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/ Centre for Mathematical Medicine seminars]
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Banting and Best has journal club on Tuesdays at 12:30pm and seminars on Friday at 12:30pm. TDCCBR has seminars Fridays at 1pm in the red room. The Hughes lab genomics journal club is at 4pm Wednesdays. Medical Genetics invited speaker seminars are at 4pm Mondays and student seminars are at 3pm Tuesdays in MSB 2172.

We also maintain an ["Events"] page, for interesting computational related events.		  * [[http://cettesemaine.utoronto.ca/|Cette Semaine]]
 * [[http://www.utoronto.ca/reg/notices_main.pl|University of Toronto Web Notice System]] maintains seminars for a few departments
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year|Chemistry]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year|Computer Science]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year|Medicine]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year|Statistics]]
  * [[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year|multiple departments]]
 * [[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML|Statistical methods for genomics at SLRI]]
 * [[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/|Centre for Mathematical Medicine seminars]]
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A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page.

A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page.		 A [[Conferences|list of conferences]] that members of the Bader lab will attend or have attended is on the [[Conferences]] page.
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The University of Toronto [[Courses|offers a number of courses and programs]] in computational biology.
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The University of Toronto [:Courses:offers a number of courses and programs] in computational biology. Seneca College also offers a [[http://bioinformatics.senecac.on.ca/|bioinformatics program]].
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Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program].

The University of Waterloo [http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml undergraduate bioinformatics co-op program] and [http://monod.uwaterloo.ca/ bioinformatics research group].		 The University of Waterloo [[http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml|undergraduate bioinformatics co-op program]] and [[http://monod.uwaterloo.ca/|bioinformatics research group]].
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== University of Toronto ==
||<#e0e0ff style="font-weight: bold; text-align: center;">Mainly computational ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://baderlab.org|Gary Bader]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science ||Biomolecular interaction networks and pathways, molecular profiles, cancer ||
||[[http://www.oicr.on.ca/research/batada.htm|Nizar Batada]] ||Ontario Institute for Cancer Research ||Epigenetics, noncoding RNA, genomics ||
||[[http://www.cs.toronto.edu/~bonner/|Anthony Bonner]] ||Computer Science ||Computational biology algorithms, machine learning ||
||[[http://www.cs.toronto.edu/~brudno/|Michael Brudno]] ||Computer Science, Donnelly Centre for Cellular and Biomedical Research ||Computational biology algorithms ||
||[[http://ashercutter.net/|Asher Cutter]] ||Ecology & Evolutionary Biology ||Evolutionary genetics ||
||[[http://biochemistry.utoronto.ca/chan/bch.html|Hue-Sun Chan]] ||Biochemistry, Medical Genetics ||Computational protein folding ||
||[[http://www.psi.toronto.edu/|Brendan Frey]] ||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research ||Bayesian networks, machine learning algorithms ||
||[[http://www.cs.toronto.edu/~juris/|Igor Jurisica]] ||Ontario Cancer Institute @ MaRS, Computer Science ||Cancer informatics ||
||[[http://www.kimlab.org/|Philip Kim]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science ||Biological networks, genomics, protein structure and function ||
||[[http://www.cs.toronto.edu/~lilien/|Ryan Lilien]] ||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best ||Computational structural biology ||
||[[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62|Radhakrishnan Mahadevan]] ||Chemical Engineering, IBBME ||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis ||
||[[http://www.utm.utoronto.ca/~mcmillen/|David McMillen]] ||UofT, Mississauga ||Quantitive biology, cell system simulation ||
||[[http://www.psi.toronto.edu/~quaid/|Quaid Morris]] ||Donnelly Centre for Cellular and Biomedical Research, Computer Science ||Machine learning algorithms ||
||[[http://labs.eeb.utoronto.ca/moses/|Alan Moses]] ||Cell and Systems Biology, Computer Science ||Sequence analysis, evolution ||
||[[http://www.oicr.on.ca/aboutOicr_Staff.htm|Francis Ouellette]] ||Ontario Institute of Cancer Research ||Databases, gene finding ||
||[[http://www.biochemistry.utoronto.ca/parkinson/lab/|John Parkinson]] ||Hospital for Sick Children @ MaRS, Medical Genetics ||Comparative genomics, cell system simulation ||
||[[http://biochemistry.utoronto.ca/pomes/bch.html|Regis Pomes]] ||Hospital for Sick Children ||Molecular dynamics simulations of proteins ||
||[[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab|Nicholas Provart]] ||Cell and Systems Biology ||Arabidopsis thaliana gene expression analysis ||
||[[http://biochemistry.utoronto.ca/steipe/|Boris Steipe]] ||Biochemistry, Medical Genetics ||Structural bioinformatics, protein engineering ||
||[[http://www.cs.toronto.edu/~roweis/|Sam Roweis]] ||Computer Science ||Machine learning, Analysis of large datasets ||
||[[http://www.uhnresearch.ca/labs/tillier/home.htm|Elisabeth Tillier]] ||University Health Network @ MaRS ||Molecular evolution ||
||[[http://www.mie.utoronto.ca/staff/profiles/thodoros/|Thodoros Topaloglou]] ||Mechanical and Industrial Engineering ||Data management ||
||[[http://biochemistry.utoronto.ca/wodak/bch.html|Shoshana Wodak]] ||Hospital for Sick Children, Medical Genetics ||Transcription factor-DNA binding, protein docking and engineering ||
||[[http://www.utoronto.ca/zhanglab/|Zhaolei Zhang]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Comparative genomics, evolution, regulatory element prediction ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Mainly wet lab ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://www.utoronto.ca/andrewslab/|Brenda Andrews]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Genetic and physical interactions in yeast ||
||[[http://www.utoronto.ca/boonelab/|Charlie Boone]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Genetic and physical interactions in yeast ||
||[[http://lambda.med.utoronto.ca/Davidson/|Alan Davidson]] ||Biochemistry, Medical Genetics ||Protein folding, protein interactions ||
||[[http://www.ecf.utoronto.ca/~sdavies/|Stephen Davies]] ||Institute for Biomaterials and Biomedical Engineering ||Genetic ciruits, DNA computing ||
||[[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/|David Guttman]] ||Cell and Systems Biology ||Comparative and evolutionary genomics, molecular evolution ||
||[[http://www.utoronto.ca/emililab/|Andrew Emili]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Proteomics, functional genomics, bioinformatics, mass spectrometry ||
||[[http://chemogenomics.med.utoronto.ca/|Guri Giaever]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Chemical genomics/genetics ||
||[[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM|Jack Greenblatt]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Proteomics, transcription regulation ||
||[[http://biochemistry.utoronto.ca/houry/Labpage/index.html|Walid Houry]] ||Biochemistry ||Molecular chapersones ||
||[[http://hugheslab.med.utoronto.ca/|Tim Hughes]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Functional genomics using gene expression microarrays ||
||[[http://chemogenomics.med.utoronto.ca/|Corey Nislow]] ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics ||Chemical genomics/genetics ||
||[[http://pawsonlab.mshri.on.ca/|Tony Pawson]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Cell signaling, protein interaction domains ||
||[[http://xtal.oci.utoronto.ca/prive/index.html|Gil Privé]] ||Ontario Cancer Institute ||X-ray crystallography ||
||[[http://www.tcag.ca/scherer/|Steve Scherer]] ||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics ||Human genetics ||
||[[http://www.utoronto.ca/cancyto/|Jeremy Squire]] ||Princess Margaret Hospital ||Microarrays and cancer ||
||[[http://www.wlstanfordlab.com/|William Stanford]] ||Institute of Biomaterials and Biomedical Engineering ||Mouse mutants, stem cells ||
||[[http://individual.utoronto.ca/ktruong/|Kevin Truong]] ||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering ||Protein engineering, bioinformatics ||
||[[http://www.mshri.on.ca/tyers/|Mike Tyers]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Cell division in yeast, proteomics, interaction databases ||
||[[http://kinase.uhnres.utoronto.ca/|Jim Woodgett]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||Protein kinases, DNA microarrays ||
||[[http://www.mshri.on.ca/bios/Wrana.html|Jeff Wrana]] ||Samuel Lunenfeld Research Institute, Medical Genetics ||TGF-beta pathway, protein interaction networks ||
||[[http://bigten.med.utoronto.ca|Christopher Yip]] ||Institute of Biomaterials and Biomedical Engineering ||Single molecule imaging, protein assembly ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Biostats and epidemiology ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph|Joseph Beyene]] ||Hospital for Sick Children ||Interest in gene expression microarray analysis ||
||[[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais|Laurent Briollais]] ||Samuel Lunenfeld Research Institute ||Genetic interactions, graphical models ||
||[[http://www.mshri.on.ca/mitacs/members/profiles.html|Shelley Bull]] ||Samuel Lunenfeld Research Institute ||Statistical genetics, microarray analysis ||
||[[http://142.150.180.17/faculty_template.asp?GetFile=GCelia|Celia Greenwood]] ||Hospital for Sick Children ||Genetic epidemiology, microarray analysis ||
||[[http://fisher.utstat.toronto.edu/~rafal/welcome.html|Rafal Kustra]] ||Public Health Sciences ||Mining large datasets, microarray analysis ||
||[[http://www.mshri.on.ca/bios/Mclaughlin.html|John McLaughlin]] ||Samuel Lunenfeld Research Institute ||Statistical genetics and cancer ||
||[[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094|David Tritchler]] ||Princess Margaret Hospital ||Interest in gene expression microarray analysis ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Bioethics ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://www.utoronto.ca/jcb/about/singer.htm|Peter Singer]] ||Joint Centre for Bioethics ||Genomics and global health ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Centres ||||||<#e0e0ff style="text-align: center;"> ||
||[[http://www.ccb.sickkids.ca/|Centre for Computational Biology]] ||Hospital for Sick Children ||Support and services ||
||[[http://www.phenogenomics.ca|Toronto Centre for Phenogenomics]] ||SLRI, UHN, !SickKids, St. Michael's ||Mouse phenogenomics ||
||[[http://www.cmhd.ca/|Centre for Modeling Human Disease]] ||Centre for Phenogenomics ||Gene trap database ||
||[[http://www.ehealthinnovation.org/|Centre for Global eHealth Innovation]] ||University Health Network, University of Toronto ||eHealth ||
||[[http://www.ocbn.ca/|Ontario Cancer Biomarker Network]] ||MaRS ||Cancer Biomarkers ||
||[[http://www.crio.on.ca/|Cancer Research Institute of Ontario]] ||MaRS ||Coming soon ||
||[[http://www.fields.utoronto.ca/programs/scientific/CMM/|Centre for Mathematical Medicine]] ||Fields Institute ||Medical Applications of Math ||
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== University of Toronto ==
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly computational||||||<style="background-color: #E0E0FF;"> ||
||[http://baderlab.org Gary Bader]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Biomolecular interaction networks and pathways, molecular profiles, cancer||
||[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]||Computer Science||Computational biology algorithms, machine learning||
||[http://www.cs.toronto.edu/~brudno/ Michael Brudno]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms||
||[http://ashercutter.net/ Asher Cutter]||Ecology & Evolutionary Biology||Evolutionary genetics||
||[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]||Biochemistry, Medical Genetics||Computational protein folding||
||[http://www.psi.toronto.edu/ Brendan Frey]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms||
||[http://www.blueprint.org Chris Hogue]||Biochemistry||Molecular interaction database, pathway simulation, protein folding||
||[http://www.cs.toronto.edu/~juris/ Igor Jurisica]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics||
||[http://www.cs.toronto.edu/~lilien/ Ryan Lilien]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology||
||[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62 Radhakrishnan Mahadevan]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis||
||[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]||UofT, Mississauga||Quantitive biology, cell system simulation||
||[http://www.psi.toronto.edu/~quaid/ Quaid Morris]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms||
||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparitive genomics, cell system simulation||
||[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]||Hospital for Sick Children||Molecular dynamics simulations of proteins||
||[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]||Botany||Arabidopsis thaliana gene expression analysis||
||[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering||
||[http://www.cs.toronto.edu/~roweis/ Sam Roweis]||Computer Science||Machine learning, Analysis of large datasets||
||[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]||University Health Network @ MaRS||Molecular evolution||
||[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]||Mechanical and Industrial Engineering||Data management||
||[http://biochemistry.utoronto.ca/wodak/bch.html Shoshana Wodak]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering||
||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comarative genomics, evolution, regulatory element prediction||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly wet lab||||||<style="background-color: #E0E0FF;"> ||
||[http://www.utoronto.ca/andrewslab/ Brenda Andrews]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast||
||[http://www.utoronto.ca/boonelab/ Charlie Boone]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast||
||[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]||Biochemistry, Medical Genetics||Protein folding, protein interactions||
||[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing||
||[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]||Botany||Comparative and evolutionary genomics, molecular evolution||
||[http://www.utoronto.ca/emililab/ Andrew Emili]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry||
||[http://chemogenomics.med.utoronto.ca/ Guri Giaever]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics||
||[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation||
||[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]||Biochemistry||Molecular chapersones||
||[http://hugheslab.med.utoronto.ca/ Tim Hughes]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays||
||[http://chemogenomics.med.utoronto.ca/ Corey Nislow]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics||
||[http://pawsonlab.mshri.on.ca/ Tony Pawson]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains||
||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography||
||[http://www.tcag.ca/scherer/ Steve Scherer]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics||
||[http://www.utoronto.ca/cancyto/ Jeremy Squire]||Princess Margaret Hospital||Microarrays and cancer||
||[http://www.wlstanfordlab.com/ William Stanford]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells||
||[http://individual.utoronto.ca/ktruong/ Kevin Truong]||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering||Protein engineering, bioinformatics||
||[http://www.mshri.on.ca/tyers/ Mike Tyers]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases||
||[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays||
||[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks||
||[http://bigten.med.utoronto.ca Christopher Yip]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biostats and epidemiology||||||<style="background-color: #E0E0FF;"> ||
||[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph Joseph Beyene]||Hospital for Sick Children||Interest in gene expression microarray analysis||
||[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis||
||[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]||Hospital for Sick Children||Genetic epidemiology, microarray analysis||
||[http://fisher.utstat.toronto.edu/~rafal/welcome.html Rafal Kustra]||Public Health Sciences||Mining large datasets, microarray analysis||
||[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer||
||[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]||Princess Margaret Hospital||Interest in gene expression microarray analysis||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioethics||||||<style="background-color: #E0E0FF;"> ||
||[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]||Joint Centre for Bioethics||Genomics and global health||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Centres||||||<style="background-color: #E0E0FF;"> ||
||[http://www.ccb.sickkids.ca/ Centre for Computational Biology]||Hospital for Sick Children||Support and services||
||[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics||
||[http://www.cmhd.ca/ Centre for Modeling Human Disease]||Centre for Phenogenomics||Gene trap database||
||[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]||University Health Network, University of Toronto||eHealth||
||[http://www.ocbn.ca/ Ontario Cancer Biomarker Network]||MaRS||Cancer Biomarkers||
||[http://www.crio.on.ca/ Cancer Research Institute of Ontario]||MaRS||Coming soon||
||[http://www.fields.utoronto.ca/programs/scientific/CMM/ Centre for Mathematical Medicine]||Fields Institute||Medical Applications of Math||
Line 103: Line 99:
||[[http://www.cs.yorku.ca/~datta/|Suprakash Datta]] ||Computer Science ||Genomic signal processing ||
||[[http://www.math.yorku.ca/~jgrigull/|Jörg Grigull]] ||Mathematics and Statistics ||Microarray analysis ||
||[[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument|Mariana Kant]] ||Computer Science ||Databases, algorithms ||
||[[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html|Walter Whiteley]] ||Mathematics and Statistics ||Protein structure ||
Line 104: Line 104:
||[http://www.cs.yorku.ca/~datta/ Suprakash Datta]||Computer Science||Genomic signal processing||
||[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]||Mathematics and Statistics||Microarray analysis||
||[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]||Computer Science||Databases, algorithms||
||[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]||Mathematics and Statistics||Protein structure||
Line 110: Line 106:
||See the [[http://www.torontobiotech.org/|Toronto Biotechnology Initiative]]||<style="text-align: center;"> ||
||See the [[http://cbio.ca/|Computational Biology Institute of Ontario]] [[http://cbio.ca/community.html|community website]],<<BR>> organized by Boris Steipe, for an Ontario-wide list. ||<style="text-align: center;"> {{attachment:CBIO_Logo_Name.gif}} ||
||See the [[http://bioinformatics.ca/|bioinformatics.ca]] [[http://bioinformatics.ca/bioinformatics_resources/people/|community website]],<<BR>> organized by Francis Ouellette, for a Canada-wide list. ||<style="text-align: center;"> {{attachment:bioinfoca.jpg}} ||
||See the [[http://www.gchelpdesk.ualberta.ca/|Canadian Bioinformatics Help Desk]] for help with bioinformatics tools || {{attachment:helpdesk.jpg}} ||
Line 111: Line 111:
||See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],[[BR]] organized by Boris Steipe, for an Ontario-wide list.||<style="text-align: center;">attachment:CBIO_Logo_Name.gif||
||See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],[[BR]] organized by Francis Ouellette, for a Canada-wide list.||<style="text-align: center;">attachment:bioinfoca.jpg||
||See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools||attachment:helpdesk.jpg||
Line 116: Line 113:

||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioinformatics||||||<style="background-color: #E0E0FF;"> ||
||Unleashed Informatics||http://unleashedinformatics.com/||200 Elm Street||Bioinformatics databases e.g. BIND, !SeqHound||
||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS||
||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Clinical informatics||||||<style="background-color: #E0E0FF;"> ||
||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management||
||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management||
||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Chemiinformatics||||||<style="background-color: #E0E0FF;"> ||
||Advanced Chemistry Development||https://www.acdlabs.com/||110 Yonge Street, 14th floor||Chemistry software||
||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biomedical graphics||||||<style="background-color: #E0E0FF;"> ||
||AXS Biomedical Animation Studio||http://axs3d.com/||MaRS building||Biomedical 3D animation||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Genomics||||||<style="background-color: #E0E0FF;"> ||
||!ChondroGene||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)||Molecular diagnostics||
||!CombiMatrix||http://www.combimatrix.com/||MaRS||Custom DNA microarrays||
||Tm Bioscience||http://www.tmbioscience.com/||439 University Ave, Suite 900||DNA-based diagnostics||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Proteomics||||||<style="background-color: #E0E0FF;"> ||
||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software||
||Infochromics||http://www.infochromics.com/||MaRS building||Proteomics data analysis software||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Pharmaceutical||||||<style="background-color: #E0E0FF;"> ||
||Sanofi Pasteur||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West||Vaccine development||
||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biotech hubs||||||<style="background-color: #E0E0FF;"> ||
||MaRS Discovery District (Medical and Related Services)||http://www.marsdd.com/||MaRS building||Biotechnology hub||		 ||<#e0e0ff style="font-weight: bold; text-align: center;">Bioinformatics ||||||<#e0e0ff style="text-align: center;"> ||
||Unleashed Informatics ||http://unleashedinformatics.com/||200 Elm Street ||Bioinformatics databases e.g. BIND, !SeqHound ||
||Benetech ||http://www.benetech.com/||180 Bloor St. W. Suite 500 ||Clinical software, LIMS ||
||cStar Technologies ||http://www.cstartech.com/||1122 Finch Ave. W. ||Wireless sample tracking ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Clinical informatics ||||||<#e0e0ff style="text-align: center;"> ||
||!McDougall Scientific ||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305 ||Clinical statistical analysis, data management ||
||Medical Databanks ||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor ||Clinical research, data management ||
||!RamSoft ||http://www.ramsoft.biz/||243 College Street, Suite 100 ||Medical imaging software ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Chemiinformatics ||||||<#e0e0ff style="text-align: center;"> ||
||Advanced Chemistry Development ||https://www.acdlabs.com/||110 Yonge Street, 14th floor ||Chemistry software ||
||!SimBioSys ||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520 ||Computational chemistry, docking ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Biomedical graphics ||||||<#e0e0ff style="text-align: center;"> ||
||AXS Biomedical Animation Studio ||http://axs3d.com/||MaRS building ||Biomedical 3D animation ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Genomics ||||||<#e0e0ff style="text-align: center;"> ||
||!ChondroGene ||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele) ||Molecular diagnostics ||
||!CombiMatrix ||http://www.combimatrix.com/||MaRS||Custom DNA microarrays ||
||Tm Bioscience ||http://www.tmbioscience.com/||439 University Ave, Suite 900 ||DNA-based diagnostics ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Proteomics ||||||<#e0e0ff style="text-align: center;"> ||
||MDS Sciex ||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON ||Mass spectrometry instruments/software ||
||Infochromics ||http://www.infochromics.com/||MaRS building ||Proteomics data analysis software ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Pharmaceutical ||||||<#e0e0ff style="text-align: center;"> ||
||Sanofi Pasteur ||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West ||Vaccine development ||
||<#e0e0ff style="font-weight: bold; text-align: center;">Biotech hubs ||||||<#e0e0ff style="text-align: center;"> ||
||MaRS Discovery District (Medical and Related Services) ||http://www.marsdd.com/||MaRS building ||Biotechnology hub ||

This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at http://www.compbio.utoronto.ca/ which has more up to date information than this site.

Seminars

An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar).

Additional seminar lists:

  • Cette Semaine

  • University of Toronto Web Notice System maintains seminars for a few departments

    • Chemistry

    • Computer Science

    • Medicine

    • Statistics

    • multiple departments

  • Statistical methods for genomics at SLRI

  • Centre for Mathematical Medicine seminars

Conferences

A list of conferences that members of the Bader lab will attend or have attended is on the Conferences page.

Courses

The University of Toronto offers a number of courses and programs in computational biology.

Seneca College also offers a bioinformatics program.

The University of Waterloo undergraduate bioinformatics co-op program and bioinformatics research group.

Toronto Computational Biology Community

University of Toronto

Mainly computational

Gary Bader

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science

Biomolecular interaction networks and pathways, molecular profiles, cancer

Nizar Batada

Ontario Institute for Cancer Research

Epigenetics, noncoding RNA, genomics

Anthony Bonner

Computer Science

Computational biology algorithms, machine learning

Michael Brudno

Computer Science, Donnelly Centre for Cellular and Biomedical Research

Computational biology algorithms

Asher Cutter

Ecology & Evolutionary Biology

Evolutionary genetics

Hue-Sun Chan

Biochemistry, Medical Genetics

Computational protein folding

Brendan Frey

Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research

Bayesian networks, machine learning algorithms

Igor Jurisica

Ontario Cancer Institute @ MaRS, Computer Science

Cancer informatics

Philip Kim

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science

Biological networks, genomics, protein structure and function

Ryan Lilien

Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best

Computational structural biology

Radhakrishnan Mahadevan

Chemical Engineering, IBBME

Systems analysis and engineering of biological processes, bacterial metabolic flux analysis

David McMillen

UofT, Mississauga

Quantitive biology, cell system simulation

Quaid Morris

Donnelly Centre for Cellular and Biomedical Research, Computer Science

Machine learning algorithms

Alan Moses

Cell and Systems Biology, Computer Science

Sequence analysis, evolution

Francis Ouellette

Ontario Institute of Cancer Research

Databases, gene finding

John Parkinson

Hospital for Sick Children @ MaRS, Medical Genetics

Comparative genomics, cell system simulation

Regis Pomes

Hospital for Sick Children

Molecular dynamics simulations of proteins

Nicholas Provart

Cell and Systems Biology

Arabidopsis thaliana gene expression analysis

Boris Steipe

Biochemistry, Medical Genetics

Structural bioinformatics, protein engineering

Sam Roweis

Computer Science

Machine learning, Analysis of large datasets

Elisabeth Tillier

University Health Network @ MaRS

Molecular evolution

Thodoros Topaloglou

Mechanical and Industrial Engineering

Data management

Shoshana Wodak

Hospital for Sick Children, Medical Genetics

Transcription factor-DNA binding, protein docking and engineering

Zhaolei Zhang

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Comparative genomics, evolution, regulatory element prediction

Mainly wet lab

Brenda Andrews

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Genetic and physical interactions in yeast

Charlie Boone

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Genetic and physical interactions in yeast

Alan Davidson

Biochemistry, Medical Genetics

Protein folding, protein interactions

Stephen Davies

Institute for Biomaterials and Biomedical Engineering

Genetic ciruits, DNA computing

David Guttman

Cell and Systems Biology

Comparative and evolutionary genomics, molecular evolution

Andrew Emili

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Proteomics, functional genomics, bioinformatics, mass spectrometry

Guri Giaever

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Chemical genomics/genetics

Jack Greenblatt

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Proteomics, transcription regulation

Walid Houry

Biochemistry

Molecular chapersones

Tim Hughes

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Functional genomics using gene expression microarrays

Corey Nislow

Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics

Chemical genomics/genetics

Tony Pawson

Samuel Lunenfeld Research Institute, Medical Genetics

Cell signaling, protein interaction domains

Gil Privé

Ontario Cancer Institute

X-ray crystallography

Steve Scherer

Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics

Human genetics

Jeremy Squire

Princess Margaret Hospital

Microarrays and cancer

William Stanford

Institute of Biomaterials and Biomedical Engineering

Mouse mutants, stem cells

Kevin Truong

Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering

Protein engineering, bioinformatics

Mike Tyers

Samuel Lunenfeld Research Institute, Medical Genetics

Cell division in yeast, proteomics, interaction databases

Jim Woodgett

Samuel Lunenfeld Research Institute, Medical Genetics

Protein kinases, DNA microarrays

Jeff Wrana

Samuel Lunenfeld Research Institute, Medical Genetics

TGF-beta pathway, protein interaction networks

Christopher Yip

Institute of Biomaterials and Biomedical Engineering

Single molecule imaging, protein assembly

Biostats and epidemiology

Joseph Beyene

Hospital for Sick Children

Interest in gene expression microarray analysis

Laurent Briollais

Samuel Lunenfeld Research Institute

Genetic interactions, graphical models

Shelley Bull

Samuel Lunenfeld Research Institute

Statistical genetics, microarray analysis

Celia Greenwood

Hospital for Sick Children

Genetic epidemiology, microarray analysis

Rafal Kustra

Public Health Sciences

Mining large datasets, microarray analysis

John McLaughlin

Samuel Lunenfeld Research Institute

Statistical genetics and cancer

David Tritchler

Princess Margaret Hospital

Interest in gene expression microarray analysis

Bioethics

Peter Singer

Joint Centre for Bioethics

Genomics and global health

Centres

Centre for Computational Biology

Hospital for Sick Children

Support and services

Toronto Centre for Phenogenomics

SLRI, UHN, SickKids, St. Michael's

Mouse phenogenomics

Centre for Modeling Human Disease

Centre for Phenogenomics

Gene trap database

Centre for Global eHealth Innovation

University Health Network, University of Toronto

eHealth