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| ||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparitive genomics, cell system simulation|| | ||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparative genomics, cell system simulation|| ||[http://www.oicr.on.ca/aboutOicr_Staff.htm Francis Ouellette]||Ontario Institute of Cancer Research||Databases, gene finding||  | 
| Line 56: | Line 57: | 
| ||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comarative genomics, evolution, regulatory element prediction|| | ||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comparative genomics, evolution, regulatory element prediction|| | 
This page focuses on the Toronto Computational Biology community.
Seminars
An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar).
Additional seminar lists:
[http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine]
[http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments
[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry]
[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science]
[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine]
[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics]
[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments]
[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML Statistical methods for genomics at SLRI]
[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/ Centre for Mathematical Medicine seminars]
Conferences
A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page.
A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page.
Courses
The University of Toronto [:Courses:offers a number of courses and programs] in computational biology.
Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program].
The University of Waterloo [http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml undergraduate bioinformatics co-op program] and [http://monod.uwaterloo.ca/ bioinformatics research group].
Toronto Computational Biology Community
University of Toronto
Mainly computational  | 
  
  | 
||
[http://baderlab.org Gary Bader]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best  | 
  Biomolecular interaction networks and pathways, molecular profiles, cancer  | 
|
[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]  | 
  Computer Science  | 
  Computational biology algorithms, machine learning  | 
|
[http://www.cs.toronto.edu/~brudno/ Michael Brudno]  | 
  Computer Science, Donnelly Centre for Cellular and Biomedical Research  | 
  Computational biology algorithms  | 
|
[http://ashercutter.net/ Asher Cutter]  | 
  Ecology & Evolutionary Biology  | 
  Evolutionary genetics  | 
|
[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]  | 
  Biochemistry, Medical Genetics  | 
  Computational protein folding  | 
|
[http://www.psi.toronto.edu/ Brendan Frey]  | 
  Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research  | 
  Bayesian networks, machine learning algorithms  | 
|
[http://www.cs.toronto.edu/~juris/ Igor Jurisica]  | 
  Ontario Cancer Institute @ MaRS, Computer Science  | 
  Cancer informatics  | 
|
[http://www.cs.toronto.edu/~lilien/ Ryan Lilien]  | 
  Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best  | 
  Computational structural biology  | 
|
[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62 Radhakrishnan Mahadevan]  | 
  Chemical Engineering, IBBME  | 
  Systems analysis and engineering of biological processes, bacterial metabolic flux analysis  | 
|
UofT, Mississauga  | 
  Quantitive biology, cell system simulation  | 
||
[http://www.psi.toronto.edu/~quaid/ Quaid Morris]  | 
  Donnelly Centre for Cellular and Biomedical Research, Computer Science  | 
  Machine learning algorithms  | 
|
[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]  | 
  Hospital for Sick Children @ MaRS, Medical Genetics  | 
  Comparative genomics, cell system simulation  | 
|
[http://www.oicr.on.ca/aboutOicr_Staff.htm Francis Ouellette]  | 
  Ontario Institute of Cancer Research  | 
  Databases, gene finding  | 
|
[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]  | 
  Hospital for Sick Children  | 
  Molecular dynamics simulations of proteins  | 
|
[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]  | 
  Cell and Systems Biology  | 
  Arabidopsis thaliana gene expression analysis  | 
|
[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]  | 
  Biochemistry, Medical Genetics  | 
  Structural bioinformatics, protein engineering  | 
|
[http://www.cs.toronto.edu/~roweis/ Sam Roweis]  | 
  Computer Science  | 
  Machine learning, Analysis of large datasets  | 
|
[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]  | 
  University Health Network @ MaRS  | 
  Molecular evolution  | 
|
[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]  | 
  Mechanical and Industrial Engineering  | 
  Data management  | 
|
[http://biochemistry.utoronto.ca/wodak/bch.html Shoshana Wodak]  | 
  Hospital for Sick Children, Medical Genetics  | 
  Transcription factor-DNA binding, protein docking and engineering  | 
|
[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Comparative genomics, evolution, regulatory element prediction  | 
|
Mainly wet lab  | 
  
  | 
||
[http://www.utoronto.ca/andrewslab/ Brenda Andrews]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Genetic and physical interactions in yeast  | 
|
[http://www.utoronto.ca/boonelab/ Charlie Boone]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Genetic and physical interactions in yeast  | 
|
[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]  | 
  Biochemistry, Medical Genetics  | 
  Protein folding, protein interactions  | 
|
[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]  | 
  Institute for Biomaterials and Biomedical Engineering  | 
  Genetic ciruits, DNA computing  | 
|
[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]  | 
  Cell and Systems Biology  | 
  Comparative and evolutionary genomics, molecular evolution  | 
|
[http://www.utoronto.ca/emililab/ Andrew Emili]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Proteomics, functional genomics, bioinformatics, mass spectrometry  | 
|
[http://chemogenomics.med.utoronto.ca/ Guri Giaever]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Chemical genomics/genetics  | 
|
[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Proteomics, transcription regulation  | 
|
[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]  | 
  Biochemistry  | 
  Molecular chapersones  | 
|
[http://hugheslab.med.utoronto.ca/ Tim Hughes]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Functional genomics using gene expression microarrays  | 
|
[http://chemogenomics.med.utoronto.ca/ Corey Nislow]  | 
  Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Chemical genomics/genetics  | 
|
[http://pawsonlab.mshri.on.ca/ Tony Pawson]  | 
  Samuel Lunenfeld Research Institute, Medical Genetics  | 
  Cell signaling, protein interaction domains  | 
|
[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]  | 
  Ontario Cancer Institute  | 
  X-ray crystallography  | 
|
[http://www.tcag.ca/scherer/ Steve Scherer]  | 
  Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics  | 
  Human genetics  | 
|
[http://www.utoronto.ca/cancyto/ Jeremy Squire]  | 
  Princess Margaret Hospital  | 
  Microarrays and cancer  | 
|
[http://www.wlstanfordlab.com/ William Stanford]  | 
  Institute of Biomaterials and Biomedical Engineering  | 
  Mouse mutants, stem cells  | 
|
[http://individual.utoronto.ca/ktruong/ Kevin Truong]  | 
  Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering  | 
  Protein engineering, bioinformatics  | 
|
[http://www.mshri.on.ca/tyers/ Mike Tyers]  | 
  Samuel Lunenfeld Research Institute, Medical Genetics  | 
  Cell division in yeast, proteomics, interaction databases  | 
|
[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]  | 
  Samuel Lunenfeld Research Institute, Medical Genetics  | 
  Protein kinases, DNA microarrays  | 
|
[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]  | 
  Samuel Lunenfeld Research Institute, Medical Genetics  | 
  TGF-beta pathway, protein interaction networks  | 
|
[http://bigten.med.utoronto.ca Christopher Yip]  | 
  Institute of Biomaterials and Biomedical Engineering  | 
  Single molecule imaging, protein assembly  | 
|
Biostats and epidemiology  | 
  
  | 
||
[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph Joseph Beyene]  | 
  Hospital for Sick Children  | 
  Interest in gene expression microarray analysis  | 
|
[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais Laurent Briollais]  | 
  Samuel Lunenfeld Research Institute  | 
  Genetic interactions, graphical models  | 
|
[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]  | 
  Samuel Lunenfeld Research Institute  | 
  Statistical genetics, microarray analysis  | 
|
[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]  | 
  Hospital for Sick Children  | 
  Genetic epidemiology, microarray analysis  | 
|
[http://fisher.utstat.toronto.edu/~rafal/welcome.html Rafal Kustra]  | 
  Public Health Sciences  | 
  Mining large datasets, microarray analysis  | 
|
[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]  | 
  Samuel Lunenfeld Research Institute  | 
  Statistical genetics and cancer  | 
|
[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]  | 
  Princess Margaret Hospital  | 
  Interest in gene expression microarray analysis  | 
|
Bioethics  | 
  
  | 
||
[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]  | 
  Joint Centre for Bioethics  | 
  Genomics and global health  | 
|
Centres  | 
  
  | 
||
[http://www.ccb.sickkids.ca/ Centre for Computational Biology]  | 
  Hospital for Sick Children  | 
  Support and services  | 
|
[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]  | 
  SLRI, UHN, SickKids, St. Michael's  | 
  Mouse phenogenomics  | 
|
[http://www.cmhd.ca/ Centre for Modeling Human Disease]  | 
  Centre for Phenogenomics  | 
  Gene trap database  | 
|
[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]  | 
  University Health Network, University of Toronto  | 
  eHealth  | 
|
[http://www.ocbn.ca/ Ontario Cancer Biomarker Network]  | 
  MaRS  | 
  Cancer Biomarkers  | 
|
[http://www.crio.on.ca/ Cancer Research Institute of Ontario]  | 
  MaRS  | 
  Coming soon  | 
|
[http://www.fields.utoronto.ca/programs/scientific/CMM/ Centre for Mathematical Medicine]  | 
  Fields Institute  | 
  Medical Applications of Math  | 
|
York University
[http://www.cs.yorku.ca/~datta/ Suprakash Datta]  | 
  Computer Science  | 
  Genomic signal processing  | 
[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]  | 
  Mathematics and Statistics  | 
  Microarray analysis  | 
[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]  | 
  Computer Science  | 
  Databases, algorithms  | 
[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]  | 
  Mathematics and Statistics  | 
  Protein structure  | 
Sites
See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],BR organized by Boris Steipe, for an Ontario-wide list.  | 
  attachment:CBIO_Logo_Name.gif  | 
See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],BR organized by Francis Ouellette, for a Canada-wide list.  | 
  attachment:bioinfoca.jpg  | 
See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools  | 
  attachment:helpdesk.jpg  | 
Companies
Bioinformatics  | 
  
  | 
||
Unleashed Informatics  | 
  http://unleashedinformatics.com/||200 Elm Street  | 
  Bioinformatics databases e.g. BIND, SeqHound  | 
|
Benetech  | 
  http://www.benetech.com/||180 Bloor St. W. Suite 500  | 
  Clinical software, LIMS  | 
|
cStar Technologies  | 
  http://www.cstartech.com/||1122 Finch Ave. W.  | 
  Wireless sample tracking  | 
|
Clinical informatics  | 
  
  | 
||
McDougall Scientific  | 
  http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305  | 
  Clinical statistical analysis, data management  | 
|
Medical Databanks  | 
  http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor  | 
  Clinical research, data management  | 
|
RamSoft  | 
  http://www.ramsoft.biz/||243 College Street, Suite 100  | 
  Medical imaging software  | 
|
Chemiinformatics  | 
  
  | 
||
Advanced Chemistry Development  | 
  https://www.acdlabs.com/||110 Yonge Street, 14th floor  | 
  Chemistry software  | 
|
SimBioSys  | 
  http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520  | 
  Computational chemistry, docking  | 
|
Biomedical graphics  | 
  
  | 
||
AXS Biomedical Animation Studio  | 
  http://axs3d.com/||MaRS building  | 
  Biomedical 3D animation  | 
|
Genomics  | 
  
  | 
||
ChondroGene  | 
  http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)  | 
  Molecular diagnostics  | 
|
CombiMatrix  | 
  http://www.combimatrix.com/||MaRS||Custom DNA microarrays  | 
||
Tm Bioscience  | 
  http://www.tmbioscience.com/||439 University Ave, Suite 900  | 
  DNA-based diagnostics  | 
|
Proteomics  | 
  
  | 
||
MDS Sciex  | 
  http://www.mdssciex.com||71 Four Valley Drive, Concord, ON  | 
  Mass spectrometry instruments/software  | 
|
Infochromics  | 
  http://www.infochromics.com/||MaRS building  | 
  Proteomics data analysis software  | 
|
Pharmaceutical  | 
  
  | 
||
Sanofi Pasteur  | 
  http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West  | 
  Vaccine development  | 
|
Biotech hubs  | 
  
  | 
||
MaRS Discovery District (Medical and Related Services)  | 
  http://www.marsdd.com/||MaRS building  | 
  Biotechnology hub  | 
|
