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|  * [http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine] * [http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments * [http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry] * [http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science] * [http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine] * [http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics] * [http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments] * [http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML Statistical methods for genomics at SLRI] * [http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/ Centre for Mathematical Medicine seminars]  | 
 * [[http://www.biochemistry.utoronto.ca/department/cette_semaine.html|Cette Semaine]] * [[http://www.utoronto.ca/reg/notices_main.pl|University of Toronto Web Notice System]] maintains seminars for a few departments * [[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year|Chemistry]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year|Computer Science]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year|Medicine]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year|Statistics]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year|multiple departments]] * [[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML|Statistical methods for genomics at SLRI]] * [[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/|Centre for Mathematical Medicine seminars]]  | 
| Line 21: | Line 21: | 
| A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page. | A [[Conferences|list of conferences]] that members of the Bader lab will attend or have attended is on the [[Conferences]] page. | 
| Line 23: | Line 23: | 
| A general [:FutureConferences:list of interesting upcoming conferences] is on the [:FutureConferences:Future Conferences] page. | A general [[FutureConferences|list of interesting upcoming conferences]] is on the [[FutureConferences|Future Conferences]] page. | 
| Line 27: | Line 27: | 
| The University of Toronto [:Courses:offers a number of courses and programs] in computational biology. | The University of Toronto [[Courses|offers a number of courses and programs]] in computational biology. | 
| Line 29: | Line 29: | 
| Seneca College also offers a [http://bioinformatics.senecac.on.ca/ bioinformatics program]. | Seneca College also offers a [[http://bioinformatics.senecac.on.ca/|bioinformatics program]]. | 
| Line 31: | Line 31: | 
| The University of Waterloo [http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml undergraduate bioinformatics co-op program] and [http://monod.uwaterloo.ca/ bioinformatics research group]. | The University of Waterloo [[http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml|undergraduate bioinformatics co-op program]] and [[http://monod.uwaterloo.ca/|bioinformatics research group]]. | 
| Line 37: | Line 37: | 
| ||[http://baderlab.org Gary Bader]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science||Biomolecular interaction networks and pathways, molecular profiles, cancer|| ||[http://www.oicr.on.ca/research/batada.htm Nizar Batada]||Ontario Institute for Cancer Research||Epigenetics, next-generation DNA sequencing|| ||[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]||Computer Science||Computational biology algorithms, machine learning|| ||[http://www.cs.toronto.edu/~brudno/ Michael Brudno]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[http://ashercutter.net/ Asher Cutter]||Ecology & Evolutionary Biology||Evolutionary genetics|| ||[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]||Biochemistry, Medical Genetics||Computational protein folding|| ||[http://www.psi.toronto.edu/ Brendan Frey]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[http://www.cs.toronto.edu/~juris/ Igor Jurisica]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[http://www.cs.toronto.edu/~lilien/ Ryan Lilien]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology|| ||[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62 Radhakrishnan Mahadevan]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis|| ||[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[http://www.psi.toronto.edu/~quaid/ Quaid Morris]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[http://labs.eeb.utoronto.ca/moses/ Alan Moses]||Cell and Systems Biology, Computer Science||Sequence analysis, evolution|| ||[http://www.oicr.on.ca/aboutOicr_Staff.htm Francis Ouellette]||Ontario Institute of Cancer Research||Databases, gene finding|| ||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparative genomics, cell system simulation|| ||[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]||Cell and Systems Biology||Arabidopsis thaliana gene expression analysis|| ||[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering|| ||[http://www.cs.toronto.edu/~roweis/ Sam Roweis]||Computer Science||Machine learning, Analysis of large datasets|| ||[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]||University Health Network @ MaRS||Molecular evolution|| ||[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]||Mechanical and Industrial Engineering||Data management|| ||[http://biochemistry.utoronto.ca/wodak/bch.html Shoshana Wodak]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering|| ||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comparative genomics, evolution, regulatory element prediction||  | 
||[[http://baderlab.org|Gary Bader]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science||Biomolecular interaction networks and pathways, molecular profiles, cancer|| ||[[http://www.oicr.on.ca/research/batada.htm|Nizar Batada]]||Ontario Institute for Cancer Research||Epigenetics, noncoding RNA, genomics|| ||[[http://www.cs.toronto.edu/~bonner/|Anthony Bonner]]||Computer Science||Computational biology algorithms, machine learning|| ||[[http://www.cs.toronto.edu/~brudno/|Michael Brudno]]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[[http://ashercutter.net/|Asher Cutter]]||Ecology & Evolutionary Biology||Evolutionary genetics|| ||[[http://biochemistry.utoronto.ca/chan/bch.html|Hue-Sun Chan]]||Biochemistry, Medical Genetics||Computational protein folding|| ||[[http://www.psi.toronto.edu/|Brendan Frey]]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[[http://www.cs.toronto.edu/~juris/|Igor Jurisica]]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[[http://www.cs.toronto.edu/~lilien/|Ryan Lilien]]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology|| ||[[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62|Radhakrishnan Mahadevan]]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis|| ||[[http://www.utm.utoronto.ca/~mcmillen/|David McMillen]]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[[http://www.psi.toronto.edu/~quaid/|Quaid Morris]]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[[http://labs.eeb.utoronto.ca/moses/|Alan Moses]]||Cell and Systems Biology, Computer Science||Sequence analysis, evolution|| ||[[http://www.oicr.on.ca/aboutOicr_Staff.htm|Francis Ouellette]]||Ontario Institute of Cancer Research||Databases, gene finding|| ||[[http://www.biochemistry.utoronto.ca/parkinson/lab/|John Parkinson]]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparative genomics, cell system simulation|| ||[[http://biochemistry.utoronto.ca/pomes/bch.html|Regis Pomes]]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab|Nicholas Provart]]||Cell and Systems Biology||Arabidopsis thaliana gene expression analysis|| ||[[http://biochemistry.utoronto.ca/steipe/|Boris Steipe]]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering|| ||[[http://www.cs.toronto.edu/~roweis/|Sam Roweis]]||Computer Science||Machine learning, Analysis of large datasets|| ||[[http://www.uhnresearch.ca/labs/tillier/home.htm|Elisabeth Tillier]]||University Health Network @ MaRS||Molecular evolution|| ||[[http://www.mie.utoronto.ca/staff/profiles/thodoros/|Thodoros Topaloglou]]||Mechanical and Industrial Engineering||Data management|| ||[[http://biochemistry.utoronto.ca/wodak/bch.html|Shoshana Wodak]]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering|| ||[[http://www.utoronto.ca/zhanglab/|Zhaolei Zhang]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comparative genomics, evolution, regulatory element prediction||  | 
| Line 61: | Line 61: | 
| ||[http://www.utoronto.ca/andrewslab/ Brenda Andrews]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[http://www.utoronto.ca/boonelab/ Charlie Boone]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[http://lambda.med.utoronto.ca/Davidson/ Alan Davidson]||Biochemistry, Medical Genetics||Protein folding, protein interactions|| ||[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]||Cell and Systems Biology||Comparative and evolutionary genomics, molecular evolution|| ||[http://www.utoronto.ca/emililab/ Andrew Emili]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[http://chemogenomics.med.utoronto.ca/ Guri Giaever]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM Jack Greenblatt]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation|| ||[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]||Biochemistry||Molecular chapersones|| ||[http://hugheslab.med.utoronto.ca/ Tim Hughes]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays|| ||[http://chemogenomics.med.utoronto.ca/ Corey Nislow]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[http://pawsonlab.mshri.on.ca/ Tony Pawson]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains|| ||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography|| ||[http://www.tcag.ca/scherer/ Steve Scherer]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics|| ||[http://www.utoronto.ca/cancyto/ Jeremy Squire]||Princess Margaret Hospital||Microarrays and cancer|| ||[http://www.wlstanfordlab.com/ William Stanford]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[http://individual.utoronto.ca/ktruong/ Kevin Truong]||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering||Protein engineering, bioinformatics|| ||[http://www.mshri.on.ca/tyers/ Mike Tyers]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases|| ||[http://kinase.uhnres.utoronto.ca/ Jim Woodgett]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays|| ||[http://www.mshri.on.ca/bios/Wrana.html Jeff Wrana]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks|| ||[http://bigten.med.utoronto.ca Christopher Yip]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly||  | 
||[[http://www.utoronto.ca/andrewslab/|Brenda Andrews]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[[http://www.utoronto.ca/boonelab/|Charlie Boone]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[[http://lambda.med.utoronto.ca/Davidson/|Alan Davidson]]||Biochemistry, Medical Genetics||Protein folding, protein interactions|| ||[[http://www.ecf.utoronto.ca/~sdavies/|Stephen Davies]]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/|David Guttman]]||Cell and Systems Biology||Comparative and evolutionary genomics, molecular evolution|| ||[[http://www.utoronto.ca/emililab/|Andrew Emili]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[[http://chemogenomics.med.utoronto.ca/|Guri Giaever]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM|Jack Greenblatt]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation|| ||[[http://biochemistry.utoronto.ca/houry/Labpage/index.html|Walid Houry]]||Biochemistry||Molecular chapersones|| ||[[http://hugheslab.med.utoronto.ca/|Tim Hughes]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays|| ||[[http://chemogenomics.med.utoronto.ca/|Corey Nislow]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[[http://pawsonlab.mshri.on.ca/|Tony Pawson]]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains|| ||[[http://xtal.oci.utoronto.ca/prive/index.html|Gil Privé]]||Ontario Cancer Institute||X-ray crystallography|| ||[[http://www.tcag.ca/scherer/|Steve Scherer]]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics|| ||[[http://www.utoronto.ca/cancyto/|Jeremy Squire]]||Princess Margaret Hospital||Microarrays and cancer|| ||[[http://www.wlstanfordlab.com/|William Stanford]]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[[http://individual.utoronto.ca/ktruong/|Kevin Truong]]||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering||Protein engineering, bioinformatics|| ||[[http://www.mshri.on.ca/tyers/|Mike Tyers]]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases|| ||[[http://kinase.uhnres.utoronto.ca/|Jim Woodgett]]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays|| ||[[http://www.mshri.on.ca/bios/Wrana.html|Jeff Wrana]]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks|| ||[[http://bigten.med.utoronto.ca|Christopher Yip]]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly||  | 
| Line 83: | Line 83: | 
| ||[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph Joseph Beyene]||Hospital for Sick Children||Interest in gene expression microarray analysis|| ||[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais Laurent Briollais]||Samuel Lunenfeld Research Institute||Genetic interactions, graphical models|| ||[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[http://fisher.utstat.toronto.edu/~rafal/welcome.html Rafal Kustra]||Public Health Sciences||Mining large datasets, microarray analysis|| ||[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094 David Tritchler]||Princess Margaret Hospital||Interest in gene expression microarray analysis||  | 
||[[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph|Joseph Beyene]]||Hospital for Sick Children||Interest in gene expression microarray analysis|| ||[[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais|Laurent Briollais]]||Samuel Lunenfeld Research Institute||Genetic interactions, graphical models|| ||[[http://www.mshri.on.ca/mitacs/members/profiles.html|Shelley Bull]]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[[http://142.150.180.17/faculty_template.asp?GetFile=GCelia|Celia Greenwood]]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[[http://fisher.utstat.toronto.edu/~rafal/welcome.html|Rafal Kustra]]||Public Health Sciences||Mining large datasets, microarray analysis|| ||[[http://www.mshri.on.ca/bios/Mclaughlin.html|John McLaughlin]]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||[[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094|David Tritchler]]||Princess Margaret Hospital||Interest in gene expression microarray analysis||  | 
| Line 91: | Line 91: | 
| ||[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]||Joint Centre for Bioethics||Genomics and global health|| | ||[[http://www.utoronto.ca/jcb/about/singer.htm|Peter Singer]]||Joint Centre for Bioethics||Genomics and global health|| | 
| Line 93: | Line 93: | 
| ||[http://www.ccb.sickkids.ca/ Centre for Computational Biology]||Hospital for Sick Children||Support and services|| ||[http://www.phenogenomics.ca Toronto Centre for Phenogenomics]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics|| ||[http://www.cmhd.ca/ Centre for Modeling Human Disease]||Centre for Phenogenomics||Gene trap database|| ||[http://www.ehealthinnovation.org/ Centre for Global eHealth Innovation]||University Health Network, University of Toronto||eHealth|| ||[http://www.ocbn.ca/ Ontario Cancer Biomarker Network]||MaRS||Cancer Biomarkers|| ||[http://www.crio.on.ca/ Cancer Research Institute of Ontario]||MaRS||Coming soon|| ||[http://www.fields.utoronto.ca/programs/scientific/CMM/ Centre for Mathematical Medicine]||Fields Institute||Medical Applications of Math||  | 
||[[http://www.ccb.sickkids.ca/|Centre for Computational Biology]]||Hospital for Sick Children||Support and services|| ||[[http://www.phenogenomics.ca|Toronto Centre for Phenogenomics]]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics|| ||[[http://www.cmhd.ca/|Centre for Modeling Human Disease]]||Centre for Phenogenomics||Gene trap database|| ||[[http://www.ehealthinnovation.org/|Centre for Global eHealth Innovation]]||University Health Network, University of Toronto||eHealth|| ||[[http://www.ocbn.ca/|Ontario Cancer Biomarker Network]]||MaRS||Cancer Biomarkers|| ||[[http://www.crio.on.ca/|Cancer Research Institute of Ontario]]||MaRS||Coming soon|| ||[[http://www.fields.utoronto.ca/programs/scientific/CMM/|Centre for Mathematical Medicine]]||Fields Institute||Medical Applications of Math||  | 
| Line 103: | Line 103: | 
| ||[http://www.cs.yorku.ca/~datta/ Suprakash Datta]||Computer Science||Genomic signal processing|| ||[http://www.math.yorku.ca/~jgrigull/ Jörg Grigull]||Mathematics and Statistics||Microarray analysis|| ||[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument Mariana Kant]||Computer Science||Databases, algorithms|| ||[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html Walter Whiteley]||Mathematics and Statistics||Protein structure||  | 
||[[http://www.cs.yorku.ca/~datta/|Suprakash Datta]]||Computer Science||Genomic signal processing|| ||[[http://www.math.yorku.ca/~jgrigull/|Jörg Grigull]]||Mathematics and Statistics||Microarray analysis|| ||[[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument|Mariana Kant]]||Computer Science||Databases, algorithms|| ||[[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html|Walter Whiteley]]||Mathematics and Statistics||Protein structure||  | 
| Line 110: | Line 110: | 
| ||See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],[[BR]] organized by Boris Steipe, for an Ontario-wide list.||<style="text-align: center;">attachment:CBIO_Logo_Name.gif|| ||See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],[[BR]] organized by Francis Ouellette, for a Canada-wide list.||<style="text-align: center;">attachment:bioinfoca.jpg|| ||See the [http://www.gchelpdesk.ualberta.ca/ Canadian Bioinformatics Help Desk] for help with bioinformatics tools||attachment:helpdesk.jpg||  | 
||See the [[http://cbio.ca/|Computational Biology Institute of Ontario]] [[http://cbio.ca/community.html|community website]],<<BR>> organized by Boris Steipe, for an Ontario-wide list.||<style="text-align: center;">{{attachment:CBIO_Logo_Name.gif}}|| ||See the [[http://bioinformatics.ca/|bioinformatics.ca]] [[http://bioinformatics.ca/bioinformatics_resources/people/|community website]],<<BR>> organized by Francis Ouellette, for a Canada-wide list.||<style="text-align: center;">{{attachment:bioinfoca.jpg}}|| ||See the [[http://www.gchelpdesk.ualberta.ca/|Canadian Bioinformatics Help Desk]] for help with bioinformatics tools||{{attachment:helpdesk.jpg}}||  | 
This page focuses on the Toronto Computational Biology community.
Seminars
An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar).
Additional seminar lists:
University of Toronto Web Notice System maintains seminars for a few departments
Conferences
A list of conferences that members of the Bader lab will attend or have attended is on the Conferences page.
A general list of interesting upcoming conferences is on the Future Conferences page.
Courses
The University of Toronto offers a number of courses and programs in computational biology.
Seneca College also offers a bioinformatics program.
The University of Waterloo undergraduate bioinformatics co-op program and bioinformatics research group.
Toronto Computational Biology Community
University of Toronto
Mainly computational  | 
  
  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science  | 
  Biomolecular interaction networks and pathways, molecular profiles, cancer  | 
||
Ontario Institute for Cancer Research  | 
  Epigenetics, noncoding RNA, genomics  | 
||
Computer Science  | 
  Computational biology algorithms, machine learning  | 
||
Computer Science, Donnelly Centre for Cellular and Biomedical Research  | 
  Computational biology algorithms  | 
||
Ecology & Evolutionary Biology  | 
  Evolutionary genetics  | 
||
Biochemistry, Medical Genetics  | 
  Computational protein folding  | 
||
Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research  | 
  Bayesian networks, machine learning algorithms  | 
||
Ontario Cancer Institute @ MaRS, Computer Science  | 
  Cancer informatics  | 
||
Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best  | 
  Computational structural biology  | 
||
Chemical Engineering, IBBME  | 
  Systems analysis and engineering of biological processes, bacterial metabolic flux analysis  | 
||
UofT, Mississauga  | 
  Quantitive biology, cell system simulation  | 
||
Donnelly Centre for Cellular and Biomedical Research, Computer Science  | 
  Machine learning algorithms  | 
||
Cell and Systems Biology, Computer Science  | 
  Sequence analysis, evolution  | 
||
Ontario Institute of Cancer Research  | 
  Databases, gene finding  | 
||
Hospital for Sick Children @ MaRS, Medical Genetics  | 
  Comparative genomics, cell system simulation  | 
||
Hospital for Sick Children  | 
  Molecular dynamics simulations of proteins  | 
||
Cell and Systems Biology  | 
  Arabidopsis thaliana gene expression analysis  | 
||
Biochemistry, Medical Genetics  | 
  Structural bioinformatics, protein engineering  | 
||
Computer Science  | 
  Machine learning, Analysis of large datasets  | 
||
University Health Network @ MaRS  | 
  Molecular evolution  | 
||
Mechanical and Industrial Engineering  | 
  Data management  | 
||
Hospital for Sick Children, Medical Genetics  | 
  Transcription factor-DNA binding, protein docking and engineering  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Comparative genomics, evolution, regulatory element prediction  | 
||
Mainly wet lab  | 
  
  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Genetic and physical interactions in yeast  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Genetic and physical interactions in yeast  | 
||
Biochemistry, Medical Genetics  | 
  Protein folding, protein interactions  | 
||
Institute for Biomaterials and Biomedical Engineering  | 
  Genetic ciruits, DNA computing  | 
||
Cell and Systems Biology  | 
  Comparative and evolutionary genomics, molecular evolution  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Proteomics, functional genomics, bioinformatics, mass spectrometry  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Chemical genomics/genetics  | 
||
Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Proteomics, transcription regulation  | 
||
Biochemistry  | 
  Molecular chapersones  | 
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Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Functional genomics using gene expression microarrays  | 
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Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics  | 
  Chemical genomics/genetics  | 
||
Samuel Lunenfeld Research Institute, Medical Genetics  | 
  Cell signaling, protein interaction domains  | 
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Ontario Cancer Institute  | 
  X-ray crystallography  | 
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Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics  | 
  Human genetics  | 
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Princess Margaret Hospital  | 
  Microarrays and cancer  | 
||
Institute of Biomaterials and Biomedical Engineering  | 
  Mouse mutants, stem cells  | 
||
Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering  | 
  Protein engineering, bioinformatics  | 
||
Samuel Lunenfeld Research Institute, Medical Genetics  | 
  Cell division in yeast, proteomics, interaction databases  | 
||
Samuel Lunenfeld Research Institute, Medical Genetics  | 
  Protein kinases, DNA microarrays  | 
||
Samuel Lunenfeld Research Institute, Medical Genetics  | 
  TGF-beta pathway, protein interaction networks  | 
||
Institute of Biomaterials and Biomedical Engineering  | 
  Single molecule imaging, protein assembly  | 
||
Biostats and epidemiology  | 
  
  | 
||
Hospital for Sick Children  | 
  Interest in gene expression microarray analysis  | 
||
Samuel Lunenfeld Research Institute  | 
  Genetic interactions, graphical models  | 
||
Samuel Lunenfeld Research Institute  | 
  Statistical genetics, microarray analysis  | 
||
Hospital for Sick Children  | 
  Genetic epidemiology, microarray analysis  | 
||
Public Health Sciences  | 
  Mining large datasets, microarray analysis  | 
||
Samuel Lunenfeld Research Institute  | 
  Statistical genetics and cancer  | 
||
Princess Margaret Hospital  | 
  Interest in gene expression microarray analysis  | 
||
Bioethics  | 
  
  | 
||
Joint Centre for Bioethics  | 
  Genomics and global health  | 
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Centres  | 
  
  | 
||
Hospital for Sick Children  | 
  Support and services  | 
||
SLRI, UHN, SickKids, St. Michael's  | 
  Mouse phenogenomics  | 
||
Centre for Phenogenomics  | 
  Gene trap database  | 
||
University Health Network, University of Toronto  | 
  eHealth  | 
||
MaRS  | 
  Cancer Biomarkers  | 
||
MaRS  | 
  Coming soon  | 
||
Fields Institute  | 
  Medical Applications of Math  | 
||
York University
Computer Science  | 
  Genomic signal processing  | 
|
Mathematics and Statistics  | 
  Microarray analysis  | 
|
Computer Science  | 
  Databases, algorithms  | 
|
Mathematics and Statistics  | 
  Protein structure  | 
Sites
See the Computational Biology Institute of Ontario community website,  | 
  
  | 
See the bioinformatics.ca community website,  | 
  
  | 
See the Canadian Bioinformatics Help Desk for help with bioinformatics tools  | 
  
  | 
Companies
Bioinformatics  | 
  
  | 
||
Unleashed Informatics  | 
  http://unleashedinformatics.com/||200 Elm Street  | 
  Bioinformatics databases e.g. BIND, SeqHound  | 
|
Benetech  | 
  http://www.benetech.com/||180 Bloor St. W. Suite 500  | 
  Clinical software, LIMS  | 
|
cStar Technologies  | 
  http://www.cstartech.com/||1122 Finch Ave. W.  | 
  Wireless sample tracking  | 
|
Clinical informatics  | 
  
  | 
||
McDougall Scientific  | 
  http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305  | 
  Clinical statistical analysis, data management  | 
|
Medical Databanks  | 
  http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor  | 
  Clinical research, data management  | 
|
RamSoft  | 
  http://www.ramsoft.biz/||243 College Street, Suite 100  | 
  Medical imaging software  | 
|
Chemiinformatics  | 
  
  | 
||
Advanced Chemistry Development  | 
  https://www.acdlabs.com/||110 Yonge Street, 14th floor  | 
  Chemistry software  | 
|
SimBioSys  | 
  http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520  | 
  Computational chemistry, docking  | 
|
Biomedical graphics  | 
  
  | 
||
AXS Biomedical Animation Studio  | 
  http://axs3d.com/||MaRS building  | 
  Biomedical 3D animation  | 
|
Genomics  | 
  
  | 
||
ChondroGene  | 
  http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)  | 
  Molecular diagnostics  | 
|
CombiMatrix  | 
  http://www.combimatrix.com/||MaRS||Custom DNA microarrays  | 
||
Tm Bioscience  | 
  http://www.tmbioscience.com/||439 University Ave, Suite 900  | 
  DNA-based diagnostics  | 
|
Proteomics  | 
  
  | 
||
MDS Sciex  | 
  http://www.mdssciex.com||71 Four Valley Drive, Concord, ON  | 
  Mass spectrometry instruments/software  | 
|
Infochromics  | 
  http://www.infochromics.com/||MaRS building  | 
  Proteomics data analysis software  | 
|
Pharmaceutical  | 
  
  | 
||
Sanofi Pasteur  | 
  http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West  | 
  Vaccine development  | 
|
Biotech hubs  | 
  
  | 
||
MaRS Discovery District (Medical and Related Services)  | 
  http://www.marsdd.com/||MaRS building  | 
  Biotechnology hub  | 
|



