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| This page focuses on the Toronto Computational Biology community. | This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at https://bioinformatics.utoronto.ca/ |
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| An up to date list of computational biology relevant seminars in Toronto is maintained at http://compbio.cs.toronto.edu/cbl/events.htm (in a Google Calendar). Additional seminar lists: * [[http://www.biochemistry.utoronto.ca/department/cette_semaine.html|Cette Semaine]] * [[http://www.utoronto.ca/reg/notices_main.pl|University of Toronto Web Notice System]] maintains seminars for a few departments * [[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year|Chemistry]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year|Computer Science]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year|Medicine]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year|Statistics]] * [[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year|multiple departments]] * [[http://www.mshri.on.ca/mitacs/seminars/SEMINARS.HTML|Statistical methods for genomics at SLRI]] * [[http://www.fields.utoronto.ca/programs/scientific/CMM/06-07/|Centre for Mathematical Medicine seminars]] |
* [[http://cettesemaine.utoronto.ca/|Cette Semaine]] * https://web.cs.toronto.edu/events |
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A general [[FutureConferences|list of interesting upcoming conferences]] is on the [[FutureConferences|Future Conferences]] page. = Courses = The University of Toronto [[Courses|offers a number of courses and programs]] in computational biology. Seneca College also offers a [[http://bioinformatics.senecac.on.ca/|bioinformatics program]]. The University of Waterloo [[http://www.math.uwaterloo.ca/navigation/Prospective/programs/bioinfo.shtml|undergraduate bioinformatics co-op program]] and [[http://monod.uwaterloo.ca/|bioinformatics research group]]. |
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| == University of Toronto == ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly computational||||||<style="background-color: #E0E0FF;"> || ||[[http://baderlab.org|Gary Bader]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Molecular Genetics, Computer Science||Biomolecular interaction networks and pathways, molecular profiles, cancer|| ||[[http://www.oicr.on.ca/research/batada.htm|Nizar Batada]]||Ontario Institute for Cancer Research||Epigenetics, noncoding RNA, genomics|| ||[[http://www.cs.toronto.edu/~bonner/|Anthony Bonner]]||Computer Science||Computational biology algorithms, machine learning|| ||[[http://www.cs.toronto.edu/~brudno/|Michael Brudno]]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[[http://ashercutter.net/|Asher Cutter]]||Ecology & Evolutionary Biology||Evolutionary genetics|| ||[[http://biochemistry.utoronto.ca/chan/bch.html|Hue-Sun Chan]]||Biochemistry, Medical Genetics||Computational protein folding|| ||[[http://www.psi.toronto.edu/|Brendan Frey]]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[[http://www.cs.toronto.edu/~juris/|Igor Jurisica]]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[[http://www.cs.toronto.edu/~lilien/|Ryan Lilien]]||Donnelly Centre for Cellular and Biomedical Research, Computer Science, Banting and Best||Computational structural biology|| ||[[http://web.chem-eng.utoronto.ca/index.php?option=com_content&task=view&id=650&Itemid=62|Radhakrishnan Mahadevan]]||Chemical Engineering, IBBME||Systems analysis and engineering of biological processes, bacterial metabolic flux analysis|| ||[[http://www.utm.utoronto.ca/~mcmillen/|David McMillen]]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[[http://www.psi.toronto.edu/~quaid/|Quaid Morris]]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[[http://labs.eeb.utoronto.ca/moses/|Alan Moses]]||Cell and Systems Biology, Computer Science||Sequence analysis, evolution|| ||[[http://www.oicr.on.ca/aboutOicr_Staff.htm|Francis Ouellette]]||Ontario Institute of Cancer Research||Databases, gene finding|| ||[[http://www.biochemistry.utoronto.ca/parkinson/lab/|John Parkinson]]||Hospital for Sick Children @ MaRS, Medical Genetics||Comparative genomics, cell system simulation|| ||[[http://biochemistry.utoronto.ca/pomes/bch.html|Regis Pomes]]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab|Nicholas Provart]]||Cell and Systems Biology||Arabidopsis thaliana gene expression analysis|| ||[[http://biochemistry.utoronto.ca/steipe/|Boris Steipe]]||Biochemistry, Medical Genetics||Structural bioinformatics, protein engineering|| ||[[http://www.cs.toronto.edu/~roweis/|Sam Roweis]]||Computer Science||Machine learning, Analysis of large datasets|| ||[[http://www.uhnresearch.ca/labs/tillier/home.htm|Elisabeth Tillier]]||University Health Network @ MaRS||Molecular evolution|| ||[[http://www.mie.utoronto.ca/staff/profiles/thodoros/|Thodoros Topaloglou]]||Mechanical and Industrial Engineering||Data management|| ||[[http://biochemistry.utoronto.ca/wodak/bch.html|Shoshana Wodak]]||Hospital for Sick Children, Medical Genetics||Transcription factor-DNA binding, protein docking and engineering|| ||[[http://www.utoronto.ca/zhanglab/|Zhaolei Zhang]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Comparative genomics, evolution, regulatory element prediction|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Mainly wet lab||||||<style="background-color: #E0E0FF;"> || ||[[http://www.utoronto.ca/andrewslab/|Brenda Andrews]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[[http://www.utoronto.ca/boonelab/|Charlie Boone]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Genetic and physical interactions in yeast|| ||[[http://lambda.med.utoronto.ca/Davidson/|Alan Davidson]]||Biochemistry, Medical Genetics||Protein folding, protein interactions|| ||[[http://www.ecf.utoronto.ca/~sdavies/|Stephen Davies]]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/|David Guttman]]||Cell and Systems Biology||Comparative and evolutionary genomics, molecular evolution|| ||[[http://www.utoronto.ca/emililab/|Andrew Emili]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[[http://chemogenomics.med.utoronto.ca/|Guri Giaever]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[[http://www.utoronto.ca/medicalgenetics/PIs/GREENBLA.HTM|Jack Greenblatt]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Proteomics, transcription regulation|| ||[[http://biochemistry.utoronto.ca/houry/Labpage/index.html|Walid Houry]]||Biochemistry||Molecular chapersones|| ||[[http://hugheslab.med.utoronto.ca/|Tim Hughes]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Functional genomics using gene expression microarrays|| ||[[http://chemogenomics.med.utoronto.ca/|Corey Nislow]]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best, Medical Genetics||Chemical genomics/genetics|| ||[[http://pawsonlab.mshri.on.ca/|Tony Pawson]]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell signaling, protein interaction domains|| ||[[http://xtal.oci.utoronto.ca/prive/index.html|Gil Privé]]||Ontario Cancer Institute||X-ray crystallography|| ||[[http://www.tcag.ca/scherer/|Steve Scherer]]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics, Medical Genetics||Human genetics|| ||[[http://www.utoronto.ca/cancyto/|Jeremy Squire]]||Princess Margaret Hospital||Microarrays and cancer|| ||[[http://www.wlstanfordlab.com/|William Stanford]]||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[[http://individual.utoronto.ca/ktruong/|Kevin Truong]]||Institute of Biomaterials and Biomedical Engineering, Electrical and Computer Engineering||Protein engineering, bioinformatics|| ||[[http://www.mshri.on.ca/tyers/|Mike Tyers]]||Samuel Lunenfeld Research Institute, Medical Genetics||Cell division in yeast, proteomics, interaction databases|| ||[[http://kinase.uhnres.utoronto.ca/|Jim Woodgett]]||Samuel Lunenfeld Research Institute, Medical Genetics||Protein kinases, DNA microarrays|| ||[[http://www.mshri.on.ca/bios/Wrana.html|Jeff Wrana]]||Samuel Lunenfeld Research Institute, Medical Genetics||TGF-beta pathway, protein interaction networks|| ||[[http://bigten.med.utoronto.ca|Christopher Yip]]||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biostats and epidemiology||||||<style="background-color: #E0E0FF;"> || ||[[http://142.150.180.17/faculty_template.asp?GetFile=BJoseph|Joseph Beyene]]||Hospital for Sick Children||Interest in gene expression microarray analysis|| ||[[http://www.mshri.on.ca/?page=Dr.%20Laurent%20Briollais|Laurent Briollais]]||Samuel Lunenfeld Research Institute||Genetic interactions, graphical models|| ||[[http://www.mshri.on.ca/mitacs/members/profiles.html|Shelley Bull]]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[[http://142.150.180.17/faculty_template.asp?GetFile=GCelia|Celia Greenwood]]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[[http://fisher.utstat.toronto.edu/~rafal/welcome.html|Rafal Kustra]]||Public Health Sciences||Mining large datasets, microarray analysis|| ||[[http://www.mshri.on.ca/bios/Mclaughlin.html|John McLaughlin]]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||[[http://www.uhnres.utoronto.ca/researchers/profile.php?lookup=6094|David Tritchler]]||Princess Margaret Hospital||Interest in gene expression microarray analysis|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioethics||||||<style="background-color: #E0E0FF;"> || ||[[http://www.utoronto.ca/jcb/about/singer.htm|Peter Singer]]||Joint Centre for Bioethics||Genomics and global health|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Centres||||||<style="background-color: #E0E0FF;"> || ||[[http://www.ccb.sickkids.ca/|Centre for Computational Biology]]||Hospital for Sick Children||Support and services|| ||[[http://www.phenogenomics.ca|Toronto Centre for Phenogenomics]]||SLRI, UHN, !SickKids, St. Michael's||Mouse phenogenomics|| ||[[http://www.cmhd.ca/|Centre for Modeling Human Disease]]||Centre for Phenogenomics||Gene trap database|| ||[[http://www.ehealthinnovation.org/|Centre for Global eHealth Innovation]]||University Health Network, University of Toronto||eHealth|| ||[[http://www.ocbn.ca/|Ontario Cancer Biomarker Network]]||MaRS||Cancer Biomarkers|| ||[[http://www.crio.on.ca/|Cancer Research Institute of Ontario]]||MaRS||Coming soon|| ||[[http://www.fields.utoronto.ca/programs/scientific/CMM/|Centre for Mathematical Medicine]]||Fields Institute||Medical Applications of Math|| == York University == ||[[http://www.cs.yorku.ca/~datta/|Suprakash Datta]]||Computer Science||Genomic signal processing|| ||[[http://www.math.yorku.ca/~jgrigull/|Jörg Grigull]]||Mathematics and Statistics||Microarray analysis|| ||[[http://gl.yorku.ca:8008/GlMedia.nsf/DeptInformationTechnology/3FBEFA57B9F7327E85256A22006C0EF6?OpenDocument|Mariana Kant]]||Computer Science||Databases, algorithms|| ||[[http://www.math.yorku.ca/Who/Faculty/Whiteley/menu.html|Walter Whiteley]]||Mathematics and Statistics||Protein structure|| == Sites == ||See the [[http://cbio.ca/|Computational Biology Institute of Ontario]] [[http://cbio.ca/community.html|community website]],<<BR>> organized by Boris Steipe, for an Ontario-wide list.||<style="text-align: center;">{{attachment:CBIO_Logo_Name.gif}}|| ||See the [[http://bioinformatics.ca/|bioinformatics.ca]] [[http://bioinformatics.ca/bioinformatics_resources/people/|community website]],<<BR>> organized by Francis Ouellette, for a Canada-wide list.||<style="text-align: center;">{{attachment:bioinfoca.jpg}}|| ||See the [[http://www.gchelpdesk.ualberta.ca/|Canadian Bioinformatics Help Desk]] for help with bioinformatics tools||{{attachment:helpdesk.jpg}}|| == Companies == ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Bioinformatics||||||<style="background-color: #E0E0FF;"> || ||Unleashed Informatics||http://unleashedinformatics.com/||200 Elm Street||Bioinformatics databases e.g. BIND, !SeqHound|| ||Benetech||http://www.benetech.com/||180 Bloor St. W. Suite 500||Clinical software, LIMS|| ||cStar Technologies||http://www.cstartech.com/||1122 Finch Ave. W.||Wireless sample tracking|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Clinical informatics||||||<style="background-color: #E0E0FF;"> || ||!McDougall Scientific||http://www.mcd-sci.on.ca||789 Don Mills Rd. Suite 305||Clinical statistical analysis, data management|| ||Medical Databanks||http://www.medicaldatabanks.com/||880 Ellesmere Rd., 3rd Floor||Clinical research, data management|| ||!RamSoft||http://www.ramsoft.biz/||243 College Street, Suite 100||Medical imaging software|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Chemiinformatics||||||<style="background-color: #E0E0FF;"> || ||Advanced Chemistry Development||https://www.acdlabs.com/||110 Yonge Street, 14th floor||Chemistry software|| ||!SimBioSys||http://www.simbiosys.ca/||135 Queen's Plate Drive Unit 520||Computational chemistry, docking|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biomedical graphics||||||<style="background-color: #E0E0FF;"> || ||AXS Biomedical Animation Studio||http://axs3d.com/||MaRS building||Biomedical 3D animation|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Genomics||||||<style="background-color: #E0E0FF;"> || ||!ChondroGene||http://www.chondrogene.com/||800 Petrolia Road (401 & Keele)||Molecular diagnostics|| ||!CombiMatrix||http://www.combimatrix.com/||MaRS||Custom DNA microarrays|| ||Tm Bioscience||http://www.tmbioscience.com/||439 University Ave, Suite 900||DNA-based diagnostics|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Proteomics||||||<style="background-color: #E0E0FF;"> || ||MDS Sciex||http://www.mdssciex.com||71 Four Valley Drive, Concord, ON||Mass spectrometry instruments/software|| ||Infochromics||http://www.infochromics.com/||MaRS building||Proteomics data analysis software|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Pharmaceutical||||||<style="background-color: #E0E0FF;"> || ||Sanofi Pasteur||http://www.sanofipasteur.ca/sanofi-pasteur/front/index.jsp?siteCode=AVP_CA&lang=EN&codeRubrique=85||1755 Steeles Avenue West||Vaccine development|| ||<style="background-color: #E0E0FF; font-weight: bold; text-align: center;">Biotech hubs||||||<style="background-color: #E0E0FF;"> || ||MaRS Discovery District (Medical and Related Services)||http://www.marsdd.com/||MaRS building||Biotechnology hub|| |
Details about people and programs of study at https://bioinformatics.utoronto.ca/ |
This page focuses on the Toronto Computational Biology community. A central computational biology site has been set up at https://bioinformatics.utoronto.ca/
Seminars
Conferences
A list of conferences that members of the Bader lab will attend or have attended is on the Conferences page.
Toronto Computational Biology Community
Details about people and programs of study at https://bioinformatics.utoronto.ca/