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= Toronto Bioinformatics Community = | = Toronto Computational Biology Community = |
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== People == | == University of Toronto == |
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||Gary Bader||http://baderlab.org||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Biomolecular interaction networks and pathways|| ||Anthony Bonner||http://www.cs.toronto.edu/~bonner/||Computer Science||Computational biology algorithms, machine learning|| ||Michael Brudno|| ||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||Hue-Sun Chan|| ||Biochemistry||Computational protein folding|| ||Andrew Emili|| ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||Brendan Frey|| ||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning|| ||Celia Greenwood|| ||Hospital for Sick Children|| || ||David Guttman|| ||Botany||Comparative and Evolutionary Genomics, Molecular Evolution|| ||Chris Hogue|| ||Biochemistry||Molecular interaction database, pathway simulation, protein folding|| ||Tim Hughes|| ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Functional genomics using gene expression microarrays|| ||Igor Jurisica|| ||Ontario Cancer Institute @ MaRS, Computer Science|| || ||David !McMillen|| ||, Mississauga|| ||Quaid Morris|| ||Donnelly Centre for Cellular and Biomedical Research, Computer Science|| || ||John Parkinson|| ||Hospital for Sick Children @ MaRS|| || ||Regis Pomes|| ||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||Nicholas Provart|| ||Botany||Arabidopsis thaliana|| || ||Steve Scherer|| ||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics|| || ||Boris Steipe|| ||Biochemistry, Molecular and Medical Genetics||Structural Bioinformatics, Protein engineering|| || ||Elisabeth Tillier|| ||University Health Network @ MaRS|| || ||Thodoros Topaloglou|| ||Mechanical and Industrial Engineering|| || ||Mike Tyers|| ||Samuel Lunenfeld Research Institute|| || ||Shoshana Wodak|| ||Hospital for Sick Children|| || ||Zhaolei Zhang|| ||Donnelly Centre for Cellular and Biomedical Research, Banting and Best|| || |
||||||||<(>'''Mainly computational'''|| ||[http://baderlab.org Gary Bader]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Biomolecular interaction networks and pathways|| ||[http://www.cs.toronto.edu/~bonner/ Anthony Bonner]||Computer Science||Computational biology algorithms, machine learning|| ||[http://www.cs.toronto.edu/~brudno/ Michael Brudno]||Computer Science, Donnelly Centre for Cellular and Biomedical Research||Computational biology algorithms|| ||[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan]||Biochemistry||Computational protein folding|| ||[http://www.psi.toronto.edu/ Brendan Frey]||Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research||Bayesian networks, machine learning algorithms|| ||[http://www.blueprint.org Chris Hogue]||Biochemistry||Molecular interaction database, pathway simulation, protein folding|| ||[http://www.cs.toronto.edu/~juris/ Igor Jurisica]||Ontario Cancer Institute @ MaRS, Computer Science||Cancer informatics|| ||[http://www.utm.utoronto.ca/~mcmillen/ David McMillen]||UofT, Mississauga||Quantitive biology, cell system simulation|| ||[http://www.psi.toronto.edu/~quaid/ Quaid Morris]||Donnelly Centre for Cellular and Biomedical Research, Computer Science||Machine learning algorithms|| ||[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson]||Hospital for Sick Children @ MaRS||Comparitive genomics, cell system simulation|| ||[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes]||Hospital for Sick Children||Molecular dynamics simulations of proteins|| ||[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart]||Botany||Arabidopsis thaliana gene expression analysis|| ||[http://biochemistry.utoronto.ca/steipe/ Boris Steipe]||Biochemistry, Molecular and Medical Genetics||Structural bioinformatics, protein engineering|| ||[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier]||University Health Network @ MaRS||Molecular evolution|| ||[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou]||Mechanical and Industrial Engineering||Data management|| ||[http://www.sickkids.on.ca/research/custom/wodak.asp Shoshana Wodak]||Hospital for Sick Children||Transcription factor-DNA binding, protein docking and engineering|| ||[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Comarative genomics, evolution, regulatory element prediction|| ||||||||<(>'''Mainly wet lab'''|| ||[http://www.utoronto.ca/boonelab/ Charlie Boone]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Genetic and physical interactions in yeast|| ||[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies]||Institute for Biomaterials and Biomedical Engineering||Genetic ciruits, DNA computing|| ||[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman]||Botany||Comparative and evolutionary genomics, molecular evolution|| ||[http://www.utoronto.ca/emililab/ Andrew Emili]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Proteomics, functional genomics, bioinformatics, mass spectrometry|| ||[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry]||Biochemistry||Molecular chapersones|| ||[http://hugheslab.med.utoronto.ca/ Tim Hughes]||Donnelly Centre for Cellular and Biomedical Research, Banting and Best||Functional genomics using gene expression microarrays|| ||[http://pawsonlab.mshri.on.ca/ Tony Pawson]||Samuel Lunenfeld Research Institute||Cell signaling, protein interaction domains|| ||[http://www.tcag.ca/scherer/ Steve Scherer]||Hospital for Sick Children @ MaRS, The Centre for Applied Genomics||Human genetics|| ||[http://www.wlstanfordlab.com/ William Stanford||Institute of Biomaterials and Biomedical Engineering||Mouse mutants, stem cells|| ||[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé]||Ontario Cancer Institute||X-ray crystallography|| ||[http://www.mshri.on.ca/tyers/ Mike Tyers]||Samuel Lunenfeld Research Institute||Cell division in yeast, proteomics, interaction databases|| ||[http://bigten.med.utoronto.ca Christopher Yip]|| ||||||||<(>'''Biostats and epidemiology'''||Institute of Biomaterials and Biomedical Engineering||Single molecule imaging, protein assembly|| ||[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull]||Samuel Lunenfeld Research Institute||Statistical genetics, microarray analysis|| ||[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood]||Hospital for Sick Children||Genetic epidemiology, microarray analysis|| ||[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin]||Samuel Lunenfeld Research Institute||Statistical genetics and cancer|| ||||||||<(>'''Bioethics'''|| ||[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer]||Joint Centre for Bioethics||Genomics and global health|| ||||||||<(>'''Centres'''|| ||[http://www.ccb.sickkids.ca/ Centre for Computational Biology]||Hospital for Sick Children||Support and services|| ||[http://www.phenogenomics.ca Toronto Centre for Phenogenomics||SLRI, UHN, SickKids, St. Michael's||Mouse phenogenomics|| ||[http://www.cmhd.ca/ Centre for Modeling Human Disease||Centre for Phenogenomics||Gene trap database|| == York University == == Seneca College == |
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= Toronto Restaurants = *only good ones + reviews |
Toronto Computational Biology Seminars
We maintain an up to date list of [:Seminars:computational biology relevant seminars in Toronto]. You can subscribe to the page to get e-mail alerts whenever a new seminar is added, or you can subscribe to the RSS feed for this website at the RecentChanges page.
["Seminars"]
Additional seminar lists:
[http://www.biochemistry.utoronto.ca/department/cette_semaine.html Cette Semaine]
[http://www.utoronto.ca/reg/notices_main.pl University of Toronto Web Notice System] maintains seminars for a few departments
[http://www.utoronto.ca/reg/list_notices.pl?dept=chem&time_frame=year Chemistry]
[http://www.utoronto.ca/reg/list_notices.pl?dept=csci&time_frame=year Computer Science]
[http://www.utoronto.ca/reg/list_notices.pl?dept=medicine&time_frame=year Medicine]
[http://www.utoronto.ca/reg/list_notices.pl?dept=stats&time_frame=year Statistics]
[http://www.utoronto.ca/reg/list_notices.pl?dept=botany&dept=csci&dept=ihpst&dept=maths&dept=medicine&dept=stats&dept=zoology&dept=chem&dept=cgcs&dept=kmdi&dept=medgen&dept=physics&time_frame=year multiple departments]
Conferences
A [:Conferences:list of conferences] that members of the Bader lab will attend or have attended is on the ["Conferences"] page.
Toronto Computational Biology Community
University of Toronto
Mainly computational |
|||||
[http://baderlab.org Gary Bader] |
Donnelly Centre for Cellular and Biomedical Research, Banting and Best |
Biomolecular interaction networks and pathways |
|||
[http://www.cs.toronto.edu/~bonner/ Anthony Bonner] |
Computer Science |
Computational biology algorithms, machine learning |
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[http://www.cs.toronto.edu/~brudno/ Michael Brudno] |
Computer Science, Donnelly Centre for Cellular and Biomedical Research |
Computational biology algorithms |
|||
[http://biochemistry.utoronto.ca/chan/bch.html Hue-Sun Chan] |
Biochemistry |
Computational protein folding |
|||
[http://www.psi.toronto.edu/ Brendan Frey] |
Electrical and Computer Engineering, Donnelly Centre for Cellular and Biomedical Research |
Bayesian networks, machine learning algorithms |
|||
[http://www.blueprint.org Chris Hogue] |
Biochemistry |
Molecular interaction database, pathway simulation, protein folding |
|||
[http://www.cs.toronto.edu/~juris/ Igor Jurisica] |
Ontario Cancer Institute @ MaRS, Computer Science |
Cancer informatics |
|||
UofT, Mississauga |
Quantitive biology, cell system simulation |
||||
[http://www.psi.toronto.edu/~quaid/ Quaid Morris] |
Donnelly Centre for Cellular and Biomedical Research, Computer Science |
Machine learning algorithms |
|||
[http://www.biochemistry.utoronto.ca/parkinson/lab/ John Parkinson] |
Hospital for Sick Children @ MaRS |
Comparitive genomics, cell system simulation |
|||
[http://biochemistry.utoronto.ca/pomes/bch.html Regis Pomes] |
Hospital for Sick Children |
Molecular dynamics simulations of proteins |
|||
[http://www.botany.utoronto.ca/ResearchLabs/ProvartLab Nicholas Provart] |
Botany |
Arabidopsis thaliana gene expression analysis |
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[http://biochemistry.utoronto.ca/steipe/ Boris Steipe] |
Biochemistry, Molecular and Medical Genetics |
Structural bioinformatics, protein engineering |
|||
[http://www.uhnresearch.ca/labs/tillier/home.htm Elisabeth Tillier] |
University Health Network @ MaRS |
Molecular evolution |
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[http://www.mie.utoronto.ca/staff/profiles/thodoros/ Thodoros Topaloglou] |
Mechanical and Industrial Engineering |
Data management |
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[http://www.sickkids.on.ca/research/custom/wodak.asp Shoshana Wodak] |
Hospital for Sick Children |
Transcription factor-DNA binding, protein docking and engineering |
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[http://www.utoronto.ca/zhanglab/ Zhaolei Zhang] |
Donnelly Centre for Cellular and Biomedical Research, Banting and Best |
Comarative genomics, evolution, regulatory element prediction |
|||
Mainly wet lab |
|||||
[http://www.utoronto.ca/boonelab/ Charlie Boone] |
Donnelly Centre for Cellular and Biomedical Research, Banting and Best |
Genetic and physical interactions in yeast |
|||
[http://www.ecf.utoronto.ca/~sdavies/ Stephen Davies] |
Institute for Biomaterials and Biomedical Engineering |
Genetic ciruits, DNA computing |
|||
[http://www.botany.utoronto.ca/ResearchLabs/guttmanLab/ David Guttman] |
Botany |
Comparative and evolutionary genomics, molecular evolution |
|||
[http://www.utoronto.ca/emililab/ Andrew Emili] |
Donnelly Centre for Cellular and Biomedical Research, Banting and Best |
Proteomics, functional genomics, bioinformatics, mass spectrometry |
|||
[http://biochemistry.utoronto.ca/houry/Labpage/index.html Walid Houry] |
Biochemistry |
Molecular chapersones |
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[http://hugheslab.med.utoronto.ca/ Tim Hughes] |
Donnelly Centre for Cellular and Biomedical Research, Banting and Best |
Functional genomics using gene expression microarrays |
|||
[http://pawsonlab.mshri.on.ca/ Tony Pawson] |
Samuel Lunenfeld Research Institute |
Cell signaling, protein interaction domains |
|||
[http://www.tcag.ca/scherer/ Steve Scherer] |
Hospital for Sick Children @ MaRS, The Centre for Applied Genomics |
Human genetics |
|||
[http://www.wlstanfordlab.com/ William Stanford |
Institute of Biomaterials and Biomedical Engineering |
Mouse mutants, stem cells |
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[http://xtal.oci.utoronto.ca/prive/index.html Gil Privé] |
Ontario Cancer Institute |
X-ray crystallography |
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[http://www.mshri.on.ca/tyers/ Mike Tyers] |
Samuel Lunenfeld Research Institute |
Cell division in yeast, proteomics, interaction databases |
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[http://bigten.med.utoronto.ca Christopher Yip] |
|||||
Biostats and epidemiology |
Institute of Biomaterials and Biomedical Engineering |
Single molecule imaging, protein assembly |
|||
[http://www.mshri.on.ca/mitacs/members/profiles.html Shelley Bull] |
Samuel Lunenfeld Research Institute |
Statistical genetics, microarray analysis |
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[http://142.150.180.17/faculty_template.asp?GetFile=GCelia Celia Greenwood] |
Hospital for Sick Children |
Genetic epidemiology, microarray analysis |
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[http://www.mshri.on.ca/bios/Mclaughlin.html John McLaughlin] |
Samuel Lunenfeld Research Institute |
Statistical genetics and cancer |
|||
Bioethics |
|||||
[http://www.utoronto.ca/jcb/about/singer.htm Peter Singer] |
Joint Centre for Bioethics |
Genomics and global health |
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Centres |
|||||
[http://www.ccb.sickkids.ca/ Centre for Computational Biology] |
Hospital for Sick Children |
Support and services |
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[http://www.phenogenomics.ca Toronto Centre for Phenogenomics |
SLRI, UHN, SickKids, St. Michael's |
Mouse phenogenomics |
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[http://www.cmhd.ca/ Centre for Modeling Human Disease |
Centre for Phenogenomics |
Gene trap database |
York University
Seneca College
Sites
See the [http://cbio.ca/ Computational Biology Institute of Ontario] [http://cbio.ca/community.html community website],BR organized by Boris Steipe, for an Ontario-wide list. |
attachment:CBIO_Logo_Name.gif |
See the [http://bioinformatics.ca/ bioinformatics.ca] [http://bioinformatics.ca/bioinformatics_resources/people/ community website],BR organized by Francis Ouellette, for a Canada-wide list. |
attachment:bioinfoca.jpg |
Companies
Bioinformatics |
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Unleashed Informatics |
http://unleashedinformatics.com/||200 Elm Street |
Bioinformatics databases e.g. BIND, SeqHound |
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Chemiinformatics |
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Advanced Chemistry Development |
https://www.acdlabs.com/||110 Yonge Street, 14th floor |
Chemistry software |
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Biomedical graphics |
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AXS Biomedical Animation Studio |
http://axs3d.com/||MaRS building |
Biomedical 3D animation |
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UofT Biomedical Communications program |
M.Sc. program |
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General |
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MaRS Discovery District (Medical and Related Services) |
http://www.marsdd.com/||MaRS building |
Biotechnology hub |