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| Describe Data/PDZAffinity here. | = Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence = This data is supplementary material for : ''Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence'' == Supplemental Figures == * [[attachment:Supplementary Materials.doc]] - Figure S1-4 with legends == Supplemental Tables == * [[attachment:MousePDZdomainpeptideMap.xls|Table S1]] - Quantitative Mouse PDZ Domain-peptide Interaction Matrix * [[attachment:SemiSVR_DifferentEncoding.xls|Table S2]] - Performance on Different Encoding * [[attachment:SemiSVR_RandomBindingSites.xls|Table S3]] - Performance on Random Binding Sites * [[attachment:HumanScribbles.xls|Table S4]] - Quantitative Human Scribble PDZ Domain-peptide Interaction Matrix * [[attachment:Worm_Fly_BlindTesting.xls|Table S5]] - Blinding Testing on Worm and Fly * [[attachment:SemiSVR_SemiQuantitativeAssessment.xls|Table S6]] - Performance of SemiSVR on Semi-Quantitative Assessment * [[attachment:SemiSVR_Prediction_HumanPDZ.xls|Table S7]] - Predicted Affinity Score for Putative Human PDZ Domain-peptide Pairs * [[attachment:SemiSVR_Prediction_MousePDZ.xls|Table S8]] - Predicted Affinity Score for Putative Mouse PDZ Domain-peptide Pairs == Semi-quantitative Support Vector Regression Code == * [[attachment:SemiSVR_code.Zip]] - Matlab code for SemiSVR (compressed). == PDZ Sequence == * Mouse PDZ sequence : [[attachment:MousePDZSeq.fasta]] * Human Scribble PDZ sequence : [[attachment:HumanPDZSeq.fasta]] * ''C. elegens'' PDZ sequence : [[attachment:Celegans_PDZSeq.fasta]] * ''D. melanogaster'' PDZ Sequence : [[attachment:Fly_PDZSeq.fasta]] * SemiSVR Predictable Human PDZ Sequence : [[attachment:SemiSVRpredictableHumanPDZ.fa]] * SemiSVR Predictable Mouse PDZ Sequence : [[attachment:SemiSVRpredictableMousePDZ.fa]] |
Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence
This data is supplementary material for :
Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence
Supplemental Figures
Supplementary Materials.doc - Figure S1-4 with legends
Supplemental Tables
Table S1 - Quantitative Mouse PDZ Domain-peptide Interaction Matrix
Table S2 - Performance on Different Encoding
Table S3 - Performance on Random Binding Sites
Table S4 - Quantitative Human Scribble PDZ Domain-peptide Interaction Matrix
Table S5 - Blinding Testing on Worm and Fly
Table S6 - Performance of SemiSVR on Semi-Quantitative Assessment
Table S7 - Predicted Affinity Score for Putative Human PDZ Domain-peptide Pairs
Table S8 - Predicted Affinity Score for Putative Mouse PDZ Domain-peptide Pairs
Semi-quantitative Support Vector Regression Code
SemiSVR_code.Zip - Matlab code for SemiSVR (compressed).
PDZ Sequence
Mouse PDZ sequence : MousePDZSeq.fasta
Human Scribble PDZ sequence : HumanPDZSeq.fasta
C. elegens PDZ sequence : Celegans_PDZSeq.fasta
D. melanogaster PDZ Sequence : Fly_PDZSeq.fasta
SemiSVR Predictable Human PDZ Sequence : SemiSVRpredictableHumanPDZ.fa
SemiSVR Predictable Mouse PDZ Sequence : SemiSVRpredictableMousePDZ.fa