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| ''Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence'' | |
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| * [[attachment:MousePDZdomainpeptideMap.xls|Table S1]] - Quantitative Mouse PDZ Domain-peptide Interaction Matrix * [[attachment:SemiSVR_DifferentEncoding.xls|Table S2]] - Performance on Different Encoding * [[attachment:SemiSVR_RandomBindingSites.xls|Table S3]] - Performance on Random Binding Sites * [[attachment:HumanScribbles.xls|Table S4]] - Quantitative Human Scribble PDZ Domain-peptide Interaction Matrix * [[attachment:Worm_Fly_BlindTesting.xls|Table S5]] - Blinding Testing on Worm and Fly * [[attachment:SemiSVR_SemiQuantia tiveAssessment.xls|Table S6]] - Performance of SemiSVR on Semi-Quantitative Assessment |
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| == Semi-quantitative Support Vector Regression Code == * [[attachment:SemiSVR_code.Zip]] - Matlab code for SemiSVR (compressed). |
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| Mouse PDZ sequence : [[attachment : MousePDZSeq.fasta]] | Mouse PDZ sequence : [[attachment:MousePDZSeq.fasta]] |
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| Human Scribble PDZ sequence : [[attachment : HumanPDZSeq.fasta]] | Human Scribble PDZ sequence : [[attachment:HumanPDZSeq.fasta]] |
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| C.elegens PDZ sequence : [[attachment : Celengans_PDZSeq.fasta]] | C.elegens PDZ sequence : [[attachment:Celengans_PDZSeq.fasta]] |
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| D. melanogaster PDZ Sequence : [[attachment : Fly_PDZSeq.fasta]] | D. melanogaster PDZ Sequence : [[attachment:Fly_PDZSeq.fasta]] |
Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence
This data is supplementary material for :
Quantitative Prediction of PDZ Domain-Peptide Interactions from Primary Sequence
Supplemental Tables
Table S1 - Quantitative Mouse PDZ Domain-peptide Interaction Matrix
Table S2 - Performance on Different Encoding
Table S3 - Performance on Random Binding Sites
Table S4 - Quantitative Human Scribble PDZ Domain-peptide Interaction Matrix
Table S5 - Blinding Testing on Worm and Fly
Table S6 - Performance of SemiSVR on Semi-Quantitative Assessment
Semi-quantitative Support Vector Regression Code
SemiSVR_code.Zip - Matlab code for SemiSVR (compressed).
PDZ Sequence
Mouse PDZ sequence : MousePDZSeq.fasta
Human Scribble PDZ sequence : HumanPDZSeq.fasta
C.elegens PDZ sequence : Celengans_PDZSeq.fasta
D. melanogaster PDZ Sequence : Fly_PDZSeq.fasta