Differences between revisions 22 and 27 (spanning 5 versions)

Education

1998-2002	[http://www.utoronto.ca/ University of Toronto]	Toronto, Ontario
	Ph.D. Biochemistry	Bioinformatics

1997-1998	[http://www.utoronto.ca/ University of Toronto]	Toronto, Ontario
	Computer Science (3rd year)

1993 - 1997	[http://www.mcgill.ca/ McGill University]	Montreal, Quebec
	B.Sc. Biochemistry

Languages: English (native), FrenchBR Computer Languages: Java, C, Perl, wide-ranging technical computer expertise

Research

Apr 2006-present	[http://www.utoronto.ca/ University of Toronto]	Toronto, Ontario
	Assistant Professor	[http://www.utoronto.ca/bandb/ Banting and Best Department of Medical Research]
		[http://tdccbr.med.utoronto.ca Terrence Donnelly Centre for Cellular and Biomolecular Research (CCBR)]
		[http://www.utoronto.ca/medicalgenetics/ Department of Molecular Genetics]
		[http://compbio.cs.utoronto.ca/ Computational Biology] at the [http://www.cs.toronto.edu/DCS/index.html Department of Computer Science]
	Associate Member	[http://www.mshri.on.ca/ Samuel Lunenfeld Research Institute], [http://www.mtsinai.on.ca/ Mount Sinai Hospital], Toronto
	Biological pathway and network analysis, protein interaction prediction, network evolution

Dec 2002-Mar 2006	[http://www.mskcc.org/ Memorial Sloan-Kettering Cancer Center]	New York, NY
	Post-Doctoral Fellow	[http://www.cbio.mskcc.org/ Computational Biology Center]
	Supervisor: [http://cbio.mskcc.org/people/info/chris_sander.html Chris Sander]
	Biological pathway and network informatics, protein interaction prediction

Sep 1998-Oct 2002	[http://www.utoronto.ca/ University of Toronto], [http://www.mshri.on.ca/ Samuel Lunenfeld Research Institute]	Toronto, Ontario
	Ph.D.	[http://www.biochemistry.utoronto.ca/ Biochemistry]
	Supervisor: Christopher W.V. Hogue
	Development and use of the Biomolecular Interaction Network Database (BIND) attachment:baderBINDThesis.pdf

Teaching

September, 2008	Lecturer for [http://db2.centennialcollege.ca/ft/FMPro?-db=ftcourses.fp5&-format=record_detail.htm&-error=search_error.htm&-lay=detail&-max=10&-find=&-op=eq&Program+Code=3613 'Current Topics in Bioinformatics' BIO-417]	Centennial College
March, 2008	Lecturer for Graduate Course in [http://www.utoronto.ca/medicalgenetics/gradcourses.htm Data analysis approaches for functional genomics & proteomics] - MMG1012H [attachment:2008_Mar31_DataAnalysis_lecture.ppt.pdf Slides]	University of Toronto
February, 2008	Lecturer for Undergraduate Course in [http://biochemistry.utoronto.ca/bcb/BCB420.html Bioinformatics and Computational Biology] - BCB420	University of Toronto
November, 2007	Lecturer for Undergraduate Course in [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Bioinformatics] - BCH441H / BCH1441H	University of Toronto
November, 2007	Lecturer for Graduate Course in [http://biochemistry.utoronto.ca/graduate_studies/courses/JTB2010H/index.html Proteomics and Functional Genomics] - JTB2010H [attachment:2007_Nov19_JTB2010_lecture.ppt.pdf Handouts]	University of Toronto
June, 2007	Lecturer for [http://www.bioinformatics.ca/ Canadian Bioinformatics Workshop] Bioinformatics	Vancouver, British Columbia, Canada
June, 2007	Lecturer for [http://lipari.cs.unict.it/LipariSchool/Bio/index.php Advanced Computational Proteomics: Structure, Imaging and Control]	Lipari, Italy
June, 2007	[http://www.medils.hr/Default.aspx?art=128&sec=96 Workshop on Functional Genomics and Proteomics in Molecular Medicine]	MedILS, Split, Croatia
April, 2007	Guest lecture for Graduate Course in [http://www.utoronto.ca/zhanglab/MMG1016H/class.html Comparative Genomics] - MMG 1012H	University of Toronto
March, 2007	Panel discussion on "Achieving a Career in Academia"	Mount Sinai Hospital, Toronto
January, 2007	Guest lecture for Graduate Course in [http://www.utoronto.ca/medicalgenetics/student%20site/course%20requirements.htm Functional Genomics/Proteomics] - MMG 1012H	University of Toronto
November, 2006	Lecturer for Undergraduate Course in [http://biochemistry.utoronto.ca/undergraduates/courses/BCH441H/ Bioinformatics] - BCH441H / BCH1441H	University of Toronto
November, 2006	Lecturer for Graduate Course in [http://biochemistry.utoronto.ca/graduate_studies/courses/JTB2010H/index.html Proteomics and Functional Genomics] - JTB2010H [attachment:2006_Nov13_JTB2010_lecture.ppt.pdf Slides]	University of Toronto
June, 2006	Lecturer for [http://www.bioinformatics.ca/ Canadian Bioinformatics Workshop] Proteomics	Calgary, Alberta, Canada
June, 2004	Lecturer for Graduate Course in “Bioinformatics and Computational Biomedicine”	Weill Medical College of Cornell University, New York
August 2003BR(repeated August 2004)	Lecturer for Graduate Course in “Introduction to Computational Biomedicine”	Weill Medical College of Cornell University, New York
Apr 29-May 4, 2002	Teaching Assistant/Lecturer for [http://www.bioinformatics.ca/ Canadian Bioinformatics Workshop] Proteomics	Windsor, Ontario, Canada
Jun 11-16, 2001	Teaching Assistant for [http://www.bioinformatics.ca/ Canadian Bioinformatics Workshop] Proteomics	Edmonton, Alberta, Canada
Jun 26 – July 1, 2000	Teaching Assistant for [http://www.bioinformatics.ca/ Canadian Bioinformatics Workshop] Developing the Tools	Montreal, Quebec, Canada

Publications

Include(Publications)

Conference Organization

July 16-19, 2008
- The 6th Annual Cytoscape Conference (~80 participants)
- CCBR, University of Toronto
2003-present
- 14 BioPAX workshops (~10-30 participants)
- New York, Chicago, San Francisco, Denver, Detroit, Tokyo
September 8-9, 2004
- The 2nd Annual Cytoscape Conference (~40 participants)
- MSKCC, New York, NY

Journal Reviewer

Applied Bioinformatics, Bioessays, Biosilico, Bioinformatics, BMC Bioinformatics, Briefings in Bioinformatics, Expert Opinion on Therapeutic Targets, FEBS Letters, Genome Biology, Molecular and Cellular Proteomics, Nucleic Acids Research, Nature, Nature Biotechnology, Nature Molecular Systems Biology, Pacific Symposium on Biocomputing, PLoS Biology, PLoS Computational Biology, PNAS, Science

Journal Editor

[http://www.biomedcentral.com/bmcresnotes/edboard/ Associate Editor, BMC Research Notes]
DATABASE - The Journal of Biological Databases and Curation

Committees

Conference: [http://wiki.c2b2.columbia.edu/dream/index.php/The_3rd_DREAM_Conference 3rd Dialogue on Reverse Engineering Assessment and Methods (DREAM3), Program Committee] - Boston, 2008
Conference: [http://www.yeast-meet.org/ Yeast Genetics and Molecular Biology Meeting, Organizing Committee] - Toronto, July 2008
Conference: [http://www.iscb.org/ismb2008/special_sessions.php#session3 Interaction Networks and disease Special Session at ISMB Conference, Organizer] - Toronto, July 2008
Conference: [http://www.nyas.org/events/eventDetail.asp?eventID=10232&date=12/3/2007 2nd Dialogue on Reverse Engineering Assessment and Methods (DREAM2), Program Committee] - New York, 2007
Conference: [http://www.comp.nus.edu.sg/~giw2007/ 18th International Conference on Genome Informatics, Program committee] - Singapore, Dec.2007
Conference: [http://caprimeeting.ccb.sickkids.ca/ 3rd CAPRI evaluation meeting, Organizing committee] - Toronto, Apr.2007
Conference: [http://chianti.ucsd.edu/recombsysbio06/index.html RECOMB Satellite Conference on: Systems Biology and Computational Proteomics, Program Committee] - San Diego, Dec.2006
Conference: [http://magnet.c2b2.columbia.edu/news/DREAMInitiative.pdf Dialogue on Reverse Engineering Assessment and Methods (DREAM), Program Committee] - New York, 2006
Conference: [http://ismb2006.cbi.cnptia.embrapa.br/ Intelligent Systems for Molecular Biology (ISMB) 2006, Program Committee] - Fortaleza, Brazil, 2006
Conference: [http://research.calit2.net/recomb-workshop05/ The First Annual RECOMB Satellite Workshop on Systems Biology and The Second Annual RECOMB Satellite Workshop on Regulatory Genomics, Program Committee] - San Diego, Nov.2005
Conference: [http://www.iscb.org/ismb2005/ Intelligent Systems for Molecular Biology (ISMB) 2005, Program Committee], Detroit, USA, 2005
Standard: Biological Pathway Exchange Standards Initiative (BioPAX) - http://www.biopax.org/
Standard: Proteomics Standards Initiative Molecular Interactions (PSI-MI) - http://psidev.sourceforge.net/
Consortium: Board Member, [http://www.proteinmodules.org/ Protein Modules Consortium] - From 2005
Consortium: Board Member, [http://cytoscape.org The Cytoscape Consortium] - From 2006

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+   ← Revision 27 as of 2008-10-26 17:37:41 → ⇥
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 Line 25:
-|| ||'''Associate Investigator'''||[http://www.mshri.on.ca/ Samuel Lunenfeld Research Institute], [http://www.mtsinai.on.ca/ Mount Sinai Hospital], Toronto||
+|||| ||[http://www.utoronto.ca/medicalgenetics/ Department of Molecular Genetics]||
|||| ||[http://compbio.cs.utoronto.ca/ Computational Biology] at the [http://www.cs.toronto.edu/DCS/index.html Department of Computer Science]||
|| ||'''Associate Member'''||[http://www.mshri.on.ca/ Samuel Lunenfeld Research Institute], [http://www.mtsinai.on.ca/ Mount Sinai Hospital], Toronto||
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+Line 43:
-||'''March, 2008'''||Lecturer for Graduate Course in [http://www.utoronto.ca/medicalgenetics/gradcourses.htm Data analysis approaches for functional genomics & proteomics] - MMG1012H||University of Toronto||
+||'''September, 2008'''||Lecturer for [http://db2.centennialcollege.ca/ft/FMPro?-db=ftcourses.fp5&-format=record_detail.htm&-error=search_error.htm&-lay=detail&-max=10&-find=&-op=eq&Program+Code=3613 'Current Topics in Bioinformatics' BIO-417]||Centennial College||
||'''March, 2008'''||Lecturer for Graduate Course in [http://www.utoronto.ca/medicalgenetics/gradcourses.htm Data analysis approaches for functional genomics & proteomics] - MMG1012H [attachment:2008_Mar31_DataAnalysis_lecture.ppt.pdf Slides]||University of Toronto||
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+Line 68:
+ *July 16-19, 2008
  * The 6th Annual Cytoscape Conference (~80 participants)
  * CCBR, University of Toronto
-Line 78:
+Line 84:
+ * DATABASE - The Journal of Biological Databases and Curation
-Line 80:
+Line 87:
+ * '''Conference:''' [http://wiki.c2b2.columbia.edu/dream/index.php/The_3rd_DREAM_Conference 3rd Dialogue on Reverse Engineering Assessment and Methods (DREAM3), Program Committee] - Boston, 2008
 * '''Conference:''' [http://www.yeast-meet.org/ Yeast Genetics and Molecular Biology Meeting, Organizing Committee] - Toronto, July 2008
 * '''Conference:''' [http://www.iscb.org/ismb2008/special_sessions.php#session3 Interaction Networks and disease Special Session at ISMB Conference, Organizer] - Toronto, July 2008