Examples of Gene Annotations

The fields name and other designation would be mined by the semantic summary.

1: SHH
 Official Symbol SHH and Name: sonic hedgehog homolog (Drosophila) [Homo sapiens]
 Other Aliases: HHG1, HLP3, HPE3, MCOPCB5, SMMCI, TPT, TPTPS
 Other Designations: sonic hedgehog protein
 Chromosome: 7; Location: 7q36
 Annotation:  Chromosome 7NC_000007.13 (155595558..155604967, complement)
 MIM: 600725
 GeneID: 6469
2: BMP4
 Official Symbol BMP4 and Name: bone morphogenetic protein 4 [Homo sapiens]
 Other Aliases: BMP2B, BMP2B1, MCOPS6, OFC11, ZYME
 Other Designations: BMP-2B; BMP-4; bone morphogenetic protein 2B
 Chromosome: 14; Location: 14q22-q23
 Annotation:  Chromosome 14NC_000014.8 (54416454..54423554, complement)
 MIM: 112262
 GeneID: 652
3: IFRD1
 Official Symbol IFRD1 and Name: interferon-related developmental regulator 1 [Homo sapiens]
 Other Aliases: PC4, TIS7
 Other Designations: nerve growth factor-inducible protein PC4
 Chromosome: 7; Location: 7q22-q31
 Annotation:  Chromosome 7NC_000007.13 (112063226..112116247)
 MIM: 603502
 GeneID: 3475
4: CFDP1
 Official Symbol CFDP1 and Name: craniofacial development protein 1 [Homo sapiens]
 Other Aliases: BCNT, BUCENTAUR, CP27, SWC5, Yeti, p97
 Other Designations: phosphoprotein (Bucentaur)
 Chromosome: 16; Location: 16q22.2-q22.3
 Annotation:  Chromosome 16NC_000016.9 (75327608..75467387, complement)
 MIM: 608108
 GeneID: 10428
5: BCL2
 Official Symbol BCL2 and Name: B-cell CLL/lymphoma 2 [Homo sapiens]
 Other Aliases: Bcl-2
 Other Designations: OTTHUMP00000163680; apoptosis regulator Bcl-2
 Chromosome: 18; Location: 18q21.3
 Annotation:  Chromosome 18NC_000018.9 (60790579..60986613, complement)
 MIM: 151430
 GeneID: 596
6: DPPA5
 Official Symbol DPPA5 and Name: developmental pluripotency associated 5 [Homo sapiens]
 Other Aliases: Esg1
 Other Designations: ESG-1; developmental pluripotency-associated 5 protein; embryonal stem cell specific gene 1; embryonal stem cell-specific gene 1 protein; hDPPA5
 Chromosome: 6; Location: 6q13
 Annotation:  Chromosome 6NC_000006.11 (74062787..74063953, complement)
 MIM: 611111
 GeneID: 340168
7: FOXC1
 Official Symbol FOXC1 and Name: forkhead box C1 [Homo sapiens]
 Other Aliases: ARA, FKHL7, FREAC-3, FREAC3, IGDA, IHG1, IRID1, RIEG3
 Other Designations: forkhead box protein C1; forkhead, drosophila, homolog-like 7; forkhead-related activator 3; forkhead-related protein FKHL7; forkhead-related transcription factor 3; forkhead/winged helix-like transcription factor 7; myeloid factor-delta
 Chromosome: 6; Location: 6p25
 Annotation:  Chromosome 6NC_000006.11 (1610681..1614132)
 MIM: 601090
 GeneID: 2296
8: EED
 Official Symbol EED and Name: embryonic ectoderm development [Homo sapiens]
 Other Aliases: HEED, WAIT1
 Other Designations: WD protein associating with integrin cytoplasmic tails 1; polycomb protein EED
 Chromosome: 11; Location: 11q14.2-q22.3
 Annotation:  Chromosome 11NC_000011.9 (85955815..85989781)
 MIM: 605984
 GeneID: 8726
9: TTLL7
 Official Symbol TTLL7 and Name: tubulin tyrosine ligase-like family, member 7 [Homo sapiens]
 Other Aliases: FLJ23033, FLJ36855, RP5-836J3.2
 Other Designations: testis development protein NYD-SP30; tubulin polyglutamylase TTLL7; tubulin--tyrosine ligase-like protein 7
 Chromosome: 1; Location: 1p31.1
 Annotation:  Chromosome 1NC_000001.10 (84335057..84464833, complement)
 GeneID: 79739
10: DPPA5
 Official Symbol DPPA5 and Name: developmental pluripotency associated 5 [Homo sapiens]
 Other Aliases: Esg1
 Chromosome: 6; Location: 6q13
 GeneID: 359942
 This record was replaced with GeneID: 340168
11: DPPA4
 Official Symbol DPPA4 and Name: developmental pluripotency associated 4 [Homo sapiens]
 Other Aliases: FLJ10713
 Other Designations: 2410091M23Rik
 GeneID: 359788
 This record was replaced with GeneID: 55211
12: DPPA2
 Official Symbol DPPA2 and Name: developmental pluripotency associated 2 [Homo sapiens]
 Chromosome: 3; Location: 3q13.13
 GeneID: 359786
 This record was replaced with GeneID: 151871
13: DPPA1
 Official Symbol DPPA1 and Name: developmental pluripotency associated 1 [Homo sapiens]
 GeneID: 359784
 This record was discontinued.
14: IFRD2
 Official Symbol IFRD2 and Name: interferon-related developmental regulator 2 [Homo sapiens]
 Other Aliases: FLJ40446, IFNRP, SKMc15, SM15
 Other Designations: interferon-related protein
 Chromosome: 3; Location: 3p21.3
 Annotation:  Chromosome 3NC_000003.11 (50325163..50330026, complement)
 MIM: 602725
 GeneID: 7866
15: DDEFL1
 Official Symbol DDEFL1 and Name: development and differentiation enhancing factor-like 1 [Homo sapiens]
 GeneID: 80984
 This record was replaced with GeneID: 55616
16: THPO
 Official Symbol THPO and Name: thrombopoietin [Homo sapiens]
 Other Aliases: MGC163194, MGDF, MKCSF, ML, MPLLG, TPO
 Other Designations: MPL ligand; c-mpl ligand; megakaryocyte colony-stimulating factor; megakaryocyte growth and development factor; megakaryocyte stimulating factor; myeloproliferative leukemia virus oncogene ligand; thrombopoietin nirs variant 1
 Chromosome: 3; Location: 3q27
 Annotation:  Chromosome 3NC_000003.11 (184089773..184095932, complement)
 MIM: 600044
 GeneID: 7066
17: LOC100127919
 similar to developmental pluripotency-associated 3 [Homo sapiens]
 Chromosome: 12; Location: 12q22
 Annotation:  Chromosome 12NC_000012.11 (93429041..93429523)
 GeneID: 100127919
18: LOC339441
 similar to developmental pluripotency-associated 2 [Homo sapiens]
 Chromosome: 1; Location: 1p35.3
 GeneID: 339441
 This record was discontinued.
19: LOC283368
 similar to Polyhomeotic-like protein 1 (Early development regulator protein 1) (HPH1) [Homo sapiens]
 Chromosome: 12; Location: 12q13.2
 GeneID: 283368
 This record was replaced with GeneID: 1911
20: LOC157389
 similar to development and differentiation enhancing factor 1 (H. sapiens) [Homo sapiens]
 Chromosome: 8; Location: 8q24.22
 GeneID: 157389
 This record was discontinued.
21: LOC163842
 similar to early development regulator 2 (homolog of polyhomeotic 2); polyhomeotic 2 protein [Homo sapiens]
 Chromosome: 1; Location: 1p34.3
 GeneID: 163842
 This record was discontinued.
22: LOC163696
 similar to development- and differentiation-enhancing factor 2; PYK2 C terminus-associated protein [Homo sapiens]
 Chromosome: 1; Location: 1p36.11
 GeneID: 163696
 This record was replaced with GeneID: 55616
23: LOC121482
 similar to early development regulator 1; homolog of polyhomeotic 1; homolog of mouse Rae28 (H. sapiens) [Homo sapiens]
 Chromosome: 12; Location: 12p13.31
 GeneID: 121482
 This record was discontinued.
24: PLCZ1
 Official Symbol PLCZ1 and Name: phospholipase C, zeta 1 [Homo sapiens]
 Other Aliases: MGC149685, NYD-SP27, PLCzeta
 Other Designations: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase zeta-1; PI-phospholipase C zeta 1; PLC-zeta-1; phosphoinositide phospholipase C-zeta-1; phospholipase C-zeta-1; testis-development protein NYD-SP27; testis-development related NYD-SP27
 Chromosome: 12; Location: 12p12.3
 Annotation:  Chromosome 12NC_000012.11 (18836116..18890918, complement)
 MIM: 608075
 GeneID: 89869
25: MESDC2
 Official Symbol MESDC2 and Name: mesoderm development candidate 2 [Homo sapiens]
 Other Aliases: BOCA, KIAA0081, MESD
 Other Designations: LDLR chaperone MESD; mesoderm development protein; renal carcinoma antigen NY-REN-61
 Chromosome: 15; Location: 15q13
 Annotation:  Chromosome 15NC_000015.9 (81268095..81282205, complement)
 MIM: 607783
 GeneID: 23184
26: LOC120671
 similar to EPHRIN TYPE-B RECEPTOR 4 PRECURSOR (TYROSINE-PROTEIN KINASE RECEPTOR MDK-2) (DEVELOPMENTAL KINASE 2) (TYROSINE KINASE MYK-1) [Homo sapiens]
 Chromosome: 11; Location: 11q13.2
 GeneID: 120671
 This record was discontinued.
27: LOC130625
 similar to rcd1 (required for cell differentiation, S.pombe) homolog 1; protein involved in sexual development (H. sapiens) [Homo sapiens]
 Chromosome: 2; Location: 2q36.1
 GeneID: 130625
 This record was discontinued.
28: LOC123361
 similar to early development regulator 2 (homolog of polyhomeotic 2); polyhomeotic 2 protein (H. sapiens) [Homo sapiens]
 Chromosome: 15; Location: 15q26.3
 GeneID: 123361
 This record was discontinued.
29: DANCE
 developmental arteries and neural crest epidermal growth factor-like [Homo sapiens]
 GeneID: 11268
 This record was replaced with GeneID: 10516
30: LOC116170
 similar to similar to murine leucine-rich repeat protein; possible role in neural development by protein-protein interactions; 93% similarity to D49802 (PID:g1369906) [Homo sapiens]
 Chromosome: 7
 GeneID: 116170
 This record was discontinued.
31: LOC168504
 similar to testes development-related NYD-SP18 [Homo sapiens]
 Chromosome: 7; Location: 7q31.1
 GeneID: 168504
 This record was discontinued.
32: LOC144052
 region containing membrane-spanning 4-domains, subfamily A, member 7; testes development-related NYD-SP21 [Homo sapiens]
 Chromosome: 11; Location: 11q13.1
 GeneID: 144052
 This record was discontinued.
33: LOC95049
 similar to INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 (NERVE GROWTH FACTOR-INDUCIBLE PROTEIN PC4) [Homo sapiens]
 Chromosome: 7; Location: 7q31.1
 GeneID: 95049
 This record was replaced with GeneID: 3475
34: DDEF1
 development and differentiation enhancing factor 1 [Homo sapiens]
 Other Aliases: ASAP1, KIAA1249, ZG14P
 GeneID: 11003
 This record was replaced with GeneID: 50807
35: LOC206800
 similar to development- and differentiation-enhancing factor 2; PYK2 C terminus-associated protein [Homo sapiens]
 Chromosome: 8; Location: 8q24.22
 GeneID: 206800
 This record was discontinued.
36: LOC196310
 testes development-related NYD-SP21 [Homo sapiens]
 Chromosome: 11
 GeneID: 196310
 This record was discontinued.
37: LOC147243
 similar to testes development-related NYD-SP20 (H. sapiens) [Homo sapiens]
 Chromosome: 17; Location: 17p13.3
 GeneID: 147243
 This record was discontinued.
38: C9orf24
 Official Symbol C9orf24 and Name: chromosome 9 open reading frame 24 [Homo sapiens]
 Other Aliases: RP11-573M23.4, CBE1, MGC32921, MGC33614, NYD-SP22, bA573M23.4
 Other Designations: ciliated bronchial epithelium 1; testes development-related NYD-SP22
 Chromosome: 9; Location: 9p13.3
 Annotation:  Chromosome 9NC_000009.11 (34379017..34397849, complement)
 GeneID: 84688
39: GLI2
 Official Symbol GLI2 and Name: GLI family zinc finger 2 [Homo sapiens]
 Other Aliases: HPE9, THP1, THP2
 Other Designations: GLI-Kruppel family member GLI2; OTTHUMP00000204359; glioma-associated oncogene family zinc finger 2; oncogene GLI2; tax helper protein 1; tax helper protein 2; tax-responsive element-2 holding protein; tax-responsive element-25-bp sequence binding protein; zinc finger protein GLI2
 Chromosome: 2; Location: 2q14
 Annotation:  Chromosome 2NC_000002.11 (121554867..121750229)
 MIM: 165230
 GeneID: 2736
40: LOC341912
 similar to developmental pluripotency associated 5; embryonal stem cell specific gene 1 [Homo sapiens]
 Chromosome: 14; Location: 14q24.3
 GeneID: 341912
41: PHC2
 Official Symbol PHC2 and Name: polyhomeotic homolog 2 (Drosophila) [Homo sapiens]
 Other Aliases: EDR2, HPH2, MGC163502, PH2
 Other Designations: early development regulator 2 (homolog of polyhomeotic 2); early development regulator 2-like; early development regulatory protein 2; polyhomeotic 2; polyhomeotic-like 2; polyhomeotic-like protein 2
 Chromosome: 1; Location: 1p34.3
 Annotation:  Chromosome 1NC_000001.10 (33789224..33841194, complement)
 MIM: 602979
 GeneID: 1912
42: DPPA3
 Official Symbol DPPA3 and Name: developmental pluripotency associated 3 [Homo sapiens]
 Other Aliases: STELLA
 Other Designations: developmental pluripotency-associated protein 3; stella-related protein
 Chromosome: 12; Location: 12p13.31
 Annotation:  Chromosome 12NC_000012.11 (7864089..7870155)
 MIM: 608408
 GeneID: 359787
43: SPATA9
 Official Symbol SPATA9 and Name: spermatogenesis associated 9 [Homo sapiens]
 Other Aliases: FLJ35906, NYD-SP16
 Other Designations: spermatogenesis-associated protein 9; testis development protein NYD-SP16
 Chromosome: 5; Location: 5q15
 Annotation:  Chromosome 5NC_000005.9 (94994019..95018714, complement)
 MIM: 608039
 GeneID: 83890
44: PHC3
 Official Symbol PHC3 and Name: polyhomeotic homolog 3 (Drosophila) [Homo sapiens]
 Other Aliases: DKFZp313K1221, EDR3, FLJ12729, FLJ12967, HPH3, MGC88144
 Other Designations: early development regulator 3; early development regulatory protein 3; homolog of polyhomeotic 3; polyhomeotic like 3; polyhomeotic-like protein 3
 Chromosome: 3; Location: 3q26.2
 Annotation:  Chromosome 3NC_000003.11 (169805368..169899537, complement)
 GeneID: 80012
45: EDIL3
 Official Symbol EDIL3 and Name: EGF-like repeats and discoidin I-like domains 3 [Homo sapiens]
 Other Aliases: DEL1, MGC26287
 Other Designations: EGF-like repeat and discoidin I-like domain-containing protein 3; developmental endothelial locus-1; developmentally-regulated endothelial cell locus 1 protein; integrin-binding protein DEL1
 Chromosome: 5; Location: 5q14
 Annotation:  Chromosome 5NC_000005.9 (83238126..83680611, complement)
 MIM: 606018
 GeneID: 10085
46: PHC1
 Official Symbol PHC1 and Name: polyhomeotic homolog 1 (Drosophila) [Homo sapiens]
 Other Aliases: EDR1, HPH1, RAE28
 Other Designations: Rae28-like; early development regulator 1 (homolog of polyhomeotic 1); early development regulatory protein 1; polyhomeotic 1-like; polyhomeotic-like 1; polyhomeotic-like protein 1
 Chromosome: 12; Location: 12p13
 Annotation:  Chromosome 12NC_000012.11 (9067316..9094063)
 MIM: 602978
 GeneID: 1911
47: LBH
 Official Symbol LBH and Name: limb bud and heart development homolog (mouse) [Homo sapiens]
 Other Aliases: DKFZp566J091, MGC104312, MGC163287
 Other Designations: hLBH; protein LBH
 Chromosome: 2; Location: 2p23.1
 Annotation:  Chromosome 2NC_000002.11 (30454397..30482899)
 MIM: 611763
 GeneID: 81606
48: DPPA2
 Official Symbol DPPA2 and Name: developmental pluripotency associated 2 [Homo sapiens]
 Other Aliases: CT100, PESCRG1
 Other Designations: cancer/testis antigen 100; developmental pluripotency-associated protein 2; pluripotent embryonic stem cell-related gene 1 protein
 Chromosome: 3; Location: 3q13.13
 Annotation:  Chromosome 3NC_000003.11 (109012641..109035364, complement)
 GeneID: 151871
49: NDRG4
 Official Symbol NDRG4 and Name: NDRG family member 4 [Homo sapiens]
 Other Aliases: DKFZp686I1615, FLJ30586, FLJ42011, KIAA1180, MGC19632, SMAP-8
 Other Designations: brain development-related molecule 1; protein NDRG4; smooth muscle-associated protein 8; vascular smooth muscle cell-associated protein 8
 Chromosome: 16; Location: 16q21-q22.1
 Annotation:  Chromosome 16NC_000016.9 (58497549..58547523)
 GeneID: 65009
50: MESDC1
 Official Symbol MESDC1 and Name: mesoderm development candidate 1 [Homo sapiens]
 Other Aliases: MGC99595
 Chromosome: 15; Location: 15q13
 Annotation:  Chromosome 15NC_000015.9 (81293295..81296345)
 GeneID: 59274

GeneAnnot (last edited 2010-04-06 15:01:46 by DanieleMerico)

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