Examples of Gene Annotations
The fields name and other designation would be mined by the semantic summary.
1: SHH Official Symbol SHH and Name: sonic hedgehog homolog (Drosophila) [Homo sapiens] Other Aliases: HHG1, HLP3, HPE3, MCOPCB5, SMMCI, TPT, TPTPS Other Designations: sonic hedgehog protein Chromosome: 7; Location: 7q36 Annotation: Chromosome 7NC_000007.13 (155595558..155604967, complement) MIM: 600725 GeneID: 6469 2: BMP4 Official Symbol BMP4 and Name: bone morphogenetic protein 4 [Homo sapiens] Other Aliases: BMP2B, BMP2B1, MCOPS6, OFC11, ZYME Other Designations: BMP-2B; BMP-4; bone morphogenetic protein 2B Chromosome: 14; Location: 14q22-q23 Annotation: Chromosome 14NC_000014.8 (54416454..54423554, complement) MIM: 112262 GeneID: 652 3: IFRD1 Official Symbol IFRD1 and Name: interferon-related developmental regulator 1 [Homo sapiens] Other Aliases: PC4, TIS7 Other Designations: nerve growth factor-inducible protein PC4 Chromosome: 7; Location: 7q22-q31 Annotation: Chromosome 7NC_000007.13 (112063226..112116247) MIM: 603502 GeneID: 3475 4: CFDP1 Official Symbol CFDP1 and Name: craniofacial development protein 1 [Homo sapiens] Other Aliases: BCNT, BUCENTAUR, CP27, SWC5, Yeti, p97 Other Designations: phosphoprotein (Bucentaur) Chromosome: 16; Location: 16q22.2-q22.3 Annotation: Chromosome 16NC_000016.9 (75327608..75467387, complement) MIM: 608108 GeneID: 10428 5: BCL2 Official Symbol BCL2 and Name: B-cell CLL/lymphoma 2 [Homo sapiens] Other Aliases: Bcl-2 Other Designations: OTTHUMP00000163680; apoptosis regulator Bcl-2 Chromosome: 18; Location: 18q21.3 Annotation: Chromosome 18NC_000018.9 (60790579..60986613, complement) MIM: 151430 GeneID: 596 6: DPPA5 Official Symbol DPPA5 and Name: developmental pluripotency associated 5 [Homo sapiens] Other Aliases: Esg1 Other Designations: ESG-1; developmental pluripotency-associated 5 protein; embryonal stem cell specific gene 1; embryonal stem cell-specific gene 1 protein; hDPPA5 Chromosome: 6; Location: 6q13 Annotation: Chromosome 6NC_000006.11 (74062787..74063953, complement) MIM: 611111 GeneID: 340168 7: FOXC1 Official Symbol FOXC1 and Name: forkhead box C1 [Homo sapiens] Other Aliases: ARA, FKHL7, FREAC-3, FREAC3, IGDA, IHG1, IRID1, RIEG3 Other Designations: forkhead box protein C1; forkhead, drosophila, homolog-like 7; forkhead-related activator 3; forkhead-related protein FKHL7; forkhead-related transcription factor 3; forkhead/winged helix-like transcription factor 7; myeloid factor-delta Chromosome: 6; Location: 6p25 Annotation: Chromosome 6NC_000006.11 (1610681..1614132) MIM: 601090 GeneID: 2296 8: EED Official Symbol EED and Name: embryonic ectoderm development [Homo sapiens] Other Aliases: HEED, WAIT1 Other Designations: WD protein associating with integrin cytoplasmic tails 1; polycomb protein EED Chromosome: 11; Location: 11q14.2-q22.3 Annotation: Chromosome 11NC_000011.9 (85955815..85989781) MIM: 605984 GeneID: 8726 9: TTLL7 Official Symbol TTLL7 and Name: tubulin tyrosine ligase-like family, member 7 [Homo sapiens] Other Aliases: FLJ23033, FLJ36855, RP5-836J3.2 Other Designations: testis development protein NYD-SP30; tubulin polyglutamylase TTLL7; tubulin--tyrosine ligase-like protein 7 Chromosome: 1; Location: 1p31.1 Annotation: Chromosome 1NC_000001.10 (84335057..84464833, complement) GeneID: 79739 10: DPPA5 Official Symbol DPPA5 and Name: developmental pluripotency associated 5 [Homo sapiens] Other Aliases: Esg1 Chromosome: 6; Location: 6q13 GeneID: 359942 This record was replaced with GeneID: 340168 11: DPPA4 Official Symbol DPPA4 and Name: developmental pluripotency associated 4 [Homo sapiens] Other Aliases: FLJ10713 Other Designations: 2410091M23Rik GeneID: 359788 This record was replaced with GeneID: 55211 12: DPPA2 Official Symbol DPPA2 and Name: developmental pluripotency associated 2 [Homo sapiens] Chromosome: 3; Location: 3q13.13 GeneID: 359786 This record was replaced with GeneID: 151871 13: DPPA1 Official Symbol DPPA1 and Name: developmental pluripotency associated 1 [Homo sapiens] GeneID: 359784 This record was discontinued. 14: IFRD2 Official Symbol IFRD2 and Name: interferon-related developmental regulator 2 [Homo sapiens] Other Aliases: FLJ40446, IFNRP, SKMc15, SM15 Other Designations: interferon-related protein Chromosome: 3; Location: 3p21.3 Annotation: Chromosome 3NC_000003.11 (50325163..50330026, complement) MIM: 602725 GeneID: 7866 15: DDEFL1 Official Symbol DDEFL1 and Name: development and differentiation enhancing factor-like 1 [Homo sapiens] GeneID: 80984 This record was replaced with GeneID: 55616 16: THPO Official Symbol THPO and Name: thrombopoietin [Homo sapiens] Other Aliases: MGC163194, MGDF, MKCSF, ML, MPLLG, TPO Other Designations: MPL ligand; c-mpl ligand; megakaryocyte colony-stimulating factor; megakaryocyte growth and development factor; megakaryocyte stimulating factor; myeloproliferative leukemia virus oncogene ligand; thrombopoietin nirs variant 1 Chromosome: 3; Location: 3q27 Annotation: Chromosome 3NC_000003.11 (184089773..184095932, complement) MIM: 600044 GeneID: 7066 17: LOC100127919 similar to developmental pluripotency-associated 3 [Homo sapiens] Chromosome: 12; Location: 12q22 Annotation: Chromosome 12NC_000012.11 (93429041..93429523) GeneID: 100127919 18: LOC339441 similar to developmental pluripotency-associated 2 [Homo sapiens] Chromosome: 1; Location: 1p35.3 GeneID: 339441 This record was discontinued. 19: LOC283368 similar to Polyhomeotic-like protein 1 (Early development regulator protein 1) (HPH1) [Homo sapiens] Chromosome: 12; Location: 12q13.2 GeneID: 283368 This record was replaced with GeneID: 1911 20: LOC157389 similar to development and differentiation enhancing factor 1 (H. sapiens) [Homo sapiens] Chromosome: 8; Location: 8q24.22 GeneID: 157389 This record was discontinued. 21: LOC163842 similar to early development regulator 2 (homolog of polyhomeotic 2); polyhomeotic 2 protein [Homo sapiens] Chromosome: 1; Location: 1p34.3 GeneID: 163842 This record was discontinued. 22: LOC163696 similar to development- and differentiation-enhancing factor 2; PYK2 C terminus-associated protein [Homo sapiens] Chromosome: 1; Location: 1p36.11 GeneID: 163696 This record was replaced with GeneID: 55616 23: LOC121482 similar to early development regulator 1; homolog of polyhomeotic 1; homolog of mouse Rae28 (H. sapiens) [Homo sapiens] Chromosome: 12; Location: 12p13.31 GeneID: 121482 This record was discontinued. 24: PLCZ1 Official Symbol PLCZ1 and Name: phospholipase C, zeta 1 [Homo sapiens] Other Aliases: MGC149685, NYD-SP27, PLCzeta Other Designations: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase zeta-1; PI-phospholipase C zeta 1; PLC-zeta-1; phosphoinositide phospholipase C-zeta-1; phospholipase C-zeta-1; testis-development protein NYD-SP27; testis-development related NYD-SP27 Chromosome: 12; Location: 12p12.3 Annotation: Chromosome 12NC_000012.11 (18836116..18890918, complement) MIM: 608075 GeneID: 89869 25: MESDC2 Official Symbol MESDC2 and Name: mesoderm development candidate 2 [Homo sapiens] Other Aliases: BOCA, KIAA0081, MESD Other Designations: LDLR chaperone MESD; mesoderm development protein; renal carcinoma antigen NY-REN-61 Chromosome: 15; Location: 15q13 Annotation: Chromosome 15NC_000015.9 (81268095..81282205, complement) MIM: 607783 GeneID: 23184 26: LOC120671 similar to EPHRIN TYPE-B RECEPTOR 4 PRECURSOR (TYROSINE-PROTEIN KINASE RECEPTOR MDK-2) (DEVELOPMENTAL KINASE 2) (TYROSINE KINASE MYK-1) [Homo sapiens] Chromosome: 11; Location: 11q13.2 GeneID: 120671 This record was discontinued. 27: LOC130625 similar to rcd1 (required for cell differentiation, S.pombe) homolog 1; protein involved in sexual development (H. sapiens) [Homo sapiens] Chromosome: 2; Location: 2q36.1 GeneID: 130625 This record was discontinued. 28: LOC123361 similar to early development regulator 2 (homolog of polyhomeotic 2); polyhomeotic 2 protein (H. sapiens) [Homo sapiens] Chromosome: 15; Location: 15q26.3 GeneID: 123361 This record was discontinued. 29: DANCE developmental arteries and neural crest epidermal growth factor-like [Homo sapiens] GeneID: 11268 This record was replaced with GeneID: 10516 30: LOC116170 similar to similar to murine leucine-rich repeat protein; possible role in neural development by protein-protein interactions; 93% similarity to D49802 (PID:g1369906) [Homo sapiens] Chromosome: 7 GeneID: 116170 This record was discontinued. 31: LOC168504 similar to testes development-related NYD-SP18 [Homo sapiens] Chromosome: 7; Location: 7q31.1 GeneID: 168504 This record was discontinued. 32: LOC144052 region containing membrane-spanning 4-domains, subfamily A, member 7; testes development-related NYD-SP21 [Homo sapiens] Chromosome: 11; Location: 11q13.1 GeneID: 144052 This record was discontinued. 33: LOC95049 similar to INTERFERON-RELATED DEVELOPMENTAL REGULATOR 1 (NERVE GROWTH FACTOR-INDUCIBLE PROTEIN PC4) [Homo sapiens] Chromosome: 7; Location: 7q31.1 GeneID: 95049 This record was replaced with GeneID: 3475 34: DDEF1 development and differentiation enhancing factor 1 [Homo sapiens] Other Aliases: ASAP1, KIAA1249, ZG14P GeneID: 11003 This record was replaced with GeneID: 50807 35: LOC206800 similar to development- and differentiation-enhancing factor 2; PYK2 C terminus-associated protein [Homo sapiens] Chromosome: 8; Location: 8q24.22 GeneID: 206800 This record was discontinued. 36: LOC196310 testes development-related NYD-SP21 [Homo sapiens] Chromosome: 11 GeneID: 196310 This record was discontinued. 37: LOC147243 similar to testes development-related NYD-SP20 (H. sapiens) [Homo sapiens] Chromosome: 17; Location: 17p13.3 GeneID: 147243 This record was discontinued. 38: C9orf24 Official Symbol C9orf24 and Name: chromosome 9 open reading frame 24 [Homo sapiens] Other Aliases: RP11-573M23.4, CBE1, MGC32921, MGC33614, NYD-SP22, bA573M23.4 Other Designations: ciliated bronchial epithelium 1; testes development-related NYD-SP22 Chromosome: 9; Location: 9p13.3 Annotation: Chromosome 9NC_000009.11 (34379017..34397849, complement) GeneID: 84688 39: GLI2 Official Symbol GLI2 and Name: GLI family zinc finger 2 [Homo sapiens] Other Aliases: HPE9, THP1, THP2 Other Designations: GLI-Kruppel family member GLI2; OTTHUMP00000204359; glioma-associated oncogene family zinc finger 2; oncogene GLI2; tax helper protein 1; tax helper protein 2; tax-responsive element-2 holding protein; tax-responsive element-25-bp sequence binding protein; zinc finger protein GLI2 Chromosome: 2; Location: 2q14 Annotation: Chromosome 2NC_000002.11 (121554867..121750229) MIM: 165230 GeneID: 2736 40: LOC341912 similar to developmental pluripotency associated 5; embryonal stem cell specific gene 1 [Homo sapiens] Chromosome: 14; Location: 14q24.3 GeneID: 341912 41: PHC2 Official Symbol PHC2 and Name: polyhomeotic homolog 2 (Drosophila) [Homo sapiens] Other Aliases: EDR2, HPH2, MGC163502, PH2 Other Designations: early development regulator 2 (homolog of polyhomeotic 2); early development regulator 2-like; early development regulatory protein 2; polyhomeotic 2; polyhomeotic-like 2; polyhomeotic-like protein 2 Chromosome: 1; Location: 1p34.3 Annotation: Chromosome 1NC_000001.10 (33789224..33841194, complement) MIM: 602979 GeneID: 1912 42: DPPA3 Official Symbol DPPA3 and Name: developmental pluripotency associated 3 [Homo sapiens] Other Aliases: STELLA Other Designations: developmental pluripotency-associated protein 3; stella-related protein Chromosome: 12; Location: 12p13.31 Annotation: Chromosome 12NC_000012.11 (7864089..7870155) MIM: 608408 GeneID: 359787 43: SPATA9 Official Symbol SPATA9 and Name: spermatogenesis associated 9 [Homo sapiens] Other Aliases: FLJ35906, NYD-SP16 Other Designations: spermatogenesis-associated protein 9; testis development protein NYD-SP16 Chromosome: 5; Location: 5q15 Annotation: Chromosome 5NC_000005.9 (94994019..95018714, complement) MIM: 608039 GeneID: 83890 44: PHC3 Official Symbol PHC3 and Name: polyhomeotic homolog 3 (Drosophila) [Homo sapiens] Other Aliases: DKFZp313K1221, EDR3, FLJ12729, FLJ12967, HPH3, MGC88144 Other Designations: early development regulator 3; early development regulatory protein 3; homolog of polyhomeotic 3; polyhomeotic like 3; polyhomeotic-like protein 3 Chromosome: 3; Location: 3q26.2 Annotation: Chromosome 3NC_000003.11 (169805368..169899537, complement) GeneID: 80012 45: EDIL3 Official Symbol EDIL3 and Name: EGF-like repeats and discoidin I-like domains 3 [Homo sapiens] Other Aliases: DEL1, MGC26287 Other Designations: EGF-like repeat and discoidin I-like domain-containing protein 3; developmental endothelial locus-1; developmentally-regulated endothelial cell locus 1 protein; integrin-binding protein DEL1 Chromosome: 5; Location: 5q14 Annotation: Chromosome 5NC_000005.9 (83238126..83680611, complement) MIM: 606018 GeneID: 10085 46: PHC1 Official Symbol PHC1 and Name: polyhomeotic homolog 1 (Drosophila) [Homo sapiens] Other Aliases: EDR1, HPH1, RAE28 Other Designations: Rae28-like; early development regulator 1 (homolog of polyhomeotic 1); early development regulatory protein 1; polyhomeotic 1-like; polyhomeotic-like 1; polyhomeotic-like protein 1 Chromosome: 12; Location: 12p13 Annotation: Chromosome 12NC_000012.11 (9067316..9094063) MIM: 602978 GeneID: 1911 47: LBH Official Symbol LBH and Name: limb bud and heart development homolog (mouse) [Homo sapiens] Other Aliases: DKFZp566J091, MGC104312, MGC163287 Other Designations: hLBH; protein LBH Chromosome: 2; Location: 2p23.1 Annotation: Chromosome 2NC_000002.11 (30454397..30482899) MIM: 611763 GeneID: 81606 48: DPPA2 Official Symbol DPPA2 and Name: developmental pluripotency associated 2 [Homo sapiens] Other Aliases: CT100, PESCRG1 Other Designations: cancer/testis antigen 100; developmental pluripotency-associated protein 2; pluripotent embryonic stem cell-related gene 1 protein Chromosome: 3; Location: 3q13.13 Annotation: Chromosome 3NC_000003.11 (109012641..109035364, complement) GeneID: 151871 49: NDRG4 Official Symbol NDRG4 and Name: NDRG family member 4 [Homo sapiens] Other Aliases: DKFZp686I1615, FLJ30586, FLJ42011, KIAA1180, MGC19632, SMAP-8 Other Designations: brain development-related molecule 1; protein NDRG4; smooth muscle-associated protein 8; vascular smooth muscle cell-associated protein 8 Chromosome: 16; Location: 16q21-q22.1 Annotation: Chromosome 16NC_000016.9 (58497549..58547523) GeneID: 65009 50: MESDC1 Official Symbol MESDC1 and Name: mesoderm development candidate 1 [Homo sapiens] Other Aliases: MGC99595 Chromosome: 15; Location: 15q13 Annotation: Chromosome 15NC_000015.9 (81293295..81296345) GeneID: 59274