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| R code to format the gene-sets | |
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| GMT is the standard gene-set format adopted by a few resources, such as GSEA. Original [[http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats#GMT:_Gene_Matrix_Transposed_file_format_.28.2A.gmt.29|description page]] | |
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| === Homolegene Download used for conversion to orthologs === * |
=== Orthology Table === * [[attachment:Homologene_Build65_20100910.txt|NCBI Homologene Build 65]] == Questions? == * email: daniele [dot] merico [atsign] gmail [dot] com |
Gene-set Collections
10-09-2010 Release GO-Pathways-PFAM
Sources
- Gene-Ontology BP, CC, MF (up-propagated, all evidence codes)
- KEGG Pathways
- NCI Pathways
- Biocarta Pathways
- PFAM Protein Domains
R Code and Release Notes
R code to format the gene-sets
Gene-sets (GMT format)
GMT is the standard gene-set format adopted by a few resources, such as GSEA. Original description page
Orthology Table
Questions?
- email: daniele [dot] merico [atsign] gmail [dot] com