Gene-set Collections

10-09-2010 Release GO-Pathways-PFAM

Sources

• Gene-Ontology BP, CC, MF (up-propagated, all evidence codes)
• KEGG Pathways
• NCI Pathways
• Biocarta Pathways
• PFAM Protein Domains

R Code and Release Notes

R code to format the gene-sets

• R Code

Gene-sets (GMT format)

GMT is the standard gene-set format adopted by a few resources, such as GSEA. Original description page

• Human

• Mouse

• Rat

Orthology Table

• NCBI Homologene Build 65

Questions?

• email: daniele [dot] merico [atsign] gmail [dot] com