Differences between revisions 9 and 12 (spanning 3 versions)

Gene-set Collections

16-12-2010 Release GO-Pathways-PFAM

Sources

Gene-Ontology BP, CC, MF (up-propagated, all evidence codes)
KEGG Pathways
NCI Pathways
Biocarta Pathways
PFAM Protein Domains

R Code and Release Notes

R code to format the gene-sets

R Code

Gene-sets (GMT format)

GMT is the standard gene-set format adopted by a few resources, such as GSEA. Original description page

Human
Mouse
Rat

RELEASE INFO
org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db (GO, KEGG)
- Package version: 2.4.6 
- R version: 2.12.0
- Packaged: 2010-10-04
- Built: 2010-10-21

Orthology Table

NCBI Homologene Build 65

Questions?

email: daniele [dot] merico [atsign] gmail [dot] com

-  ⇤ ← Revision 9 as of 2010-09-14 21:59:52 → 
  Size: 1010
  Editor: DanieleMerico
  Comment:
+   ← Revision 12 as of 2011-01-10 21:42:41 → ⇥
  Size: 1180
  Editor: DanieleMerico
  Comment:
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-== 10-09-2010 Release GO-Pathways-PFAM ==
+== 16-12-2010 Release GO-Pathways-PFAM ==
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- * [[attachment:GeneSet_DB_v01_exec20100910.R|R Code]]
+ * [[attachment:GeneSet_DB_v02_exec20101108.R|R Code]]
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+{{{
RELEASE INFO
org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db (GO, KEGG)
- Package version: 2.4.6 
- R version: 2.12.0
- Packaged: 2010-10-04
- Built: 2010-10-21
}}}