TableOfContents()

Introduction

This is the domain interaction team public wiki page mainly for all members to view the latest schedule, related public resources and news. There is a Google group mailing list (interactionTeam@googlegroups.com) for disseminating news and announcements. New members must be invited to join the mailing list but any existing members can initiate an invitation as long as they have a Google account (Simply log into your Google account and access your googlegroup service).

Members

Present

• Name	Research Project/Interests
  Chris Tan	Signaling Network Evolution
  Gary Bader	Biological network analysis and pathway information resources
  Shirley Hui	Domain specificity prediction
  David Gfeller	Specificity and robustness in PDZ networks
  Raffi Tonikian	Protein domain experimental specificity mapping
  Xiaofeng Xin	Protein domain interaction experimental mapping
  Xiaojian Shao	Quantitative interaction prediction

Alumni

• Name	Research Project/Interests
  Ioana Ivan	Membrane interactions with PDZ domains
  Stacy Hung	Protein interaction prediction
  Lianet Lopez	Protein domain interaction experimental mapping
  Monica Raj (UBC, Vancouver)	Protein interaction prediction
  Moyez Dharsee	Protein interaction prediction

Meetings

Organization

1. Meeting every 2 weeks
2. Brief WIP by everyone every alternate meeting

Schedule

• From Fall 2007 onward

  Time: Monday, 4.00 pm (unless indicated) Place: CCBR, 6th floor meeting room (unless indicated)

2008

• Date	Presenter	Time/Location	WIP Presentation
  Jan 14		Cancelled
  Jan 28	Raffi		1. [http://www.sciencemag.org/cgi/content/full/317/5845/1732 Free-Solution, Label-Free Molecular Interactions Studied by Back-Scattering Interferometry] 2. [http://www.sciencemag.org/cgi/content/full/317/5845/1749 Multicolor Super-Resolution Imaging with Photo-Switchable Fluorescent Probes]
  Feb 11	WIP
  Feb 25	Shirley
  Mar 10	WIP	4:00 - 6:00 PM
  Mar 24	Chris	4:00 - 6:00 PM
  Apr 7	WIP	4:00 - 6:00 PM
  Apr 21	David
  May 5	WIP
  May 19	Victoria Day??
  Jun 2	Chris
  Jun 16	WIP
  Jun 30	-
  Jul 14	Shirley
  Jul 28	WIP
  Aug 11	Andreas
  Aug 25	David+Chris
  Sep 8	WIP
  Sep 22	Chris
  Oct 6	WIP
  Oct 20	Rafi
  Nov 3	WIP
  Nov 17	David
  Dec 1	WIP
  Dec 15	Andreas
  Dec 29	WIP

2009

• Jan 12	Shirley
  Jan 26	WIP
  Feb 9	Xiaojian
  Feb 22	WIP
  Mar 9	Shobhit

Meeting Guide

Journal Club Guide

These are good practices agreed by members

1. 3-4 papers discussed per journal club, related to a specific topic.
2. Paper(s) should be sent out one week before meeting, together with length of expected discussion time e.g. 5,15,30 minutes. Very important papers may take up the entire discussion session, however less important papers should be covered rapidly.
3. Paper(s) selected should be relevant to your own work, and preferably of general interest to members.
4. Include a brief introduction on the paper(s) and why you selected it (e.g. a landmark paper, of general interest, a technological advance, important discoveries, thought-provoking)
5. Summarize the paper at a high level.

6. More information is available at http://baderlab.org/Intranet/JournalClubGuidelines

Chairperson Guide

Mission: To ensure meetings are conducted smoothly. This includes preparing the room (e.g. meeting room, projector, markers)

Before Meeting

1. Remind the presenter of the next meeting (that it is her/his turn).
2. Send reminder to team members on date, time and venue of the next coming meeting (especially if there is change in the original schedule).
3. Ensure meeting room is available. CCBR meeting rooms are normally not locked. If not, get the key from Gary (he has keys to all CCBR meeting rooms). If Gary is not around, get the key from administration office at CCBR level 2.
4. Prepare projector if it is needed. Check with Gary. If not, get it from administration office at CCBR level 2. Laptop needed will be prepared by presenter.
5. Ensure markers and whiteboard eraser is available.

During Meeting

1. Prepare and introduce agenda. It may be advisable to list "administrative issues" before a presentation or discussion.
2. Keep meeting on track (in term of agenda)
3. Keep meeting to the scheduled duration if time is a constraint
4. Moderate discussion and manage the group dynamics
   1. Try not to let one person dominate. Ask for other opinions. If some people are silent, draw them out by asking for their thoughts.
   2. Decide when to end debate on each topic.
   3. Give a short summary or recap before going on to the next topic.

After Meeting

1. Update wiki
2. Return projector

Booking a meeting room in CCBR

1. The availability of CCBR meeting rooms can be found at http://tdccbr.med.utoronto.ca under "Seminar & Calender" menu.

2. To book a meeting room, email CCBR <CCBR.Info@utoronto.ca>. Cancel a booking via the same email address.

Resources

Other Groups and Researchers

Protein Domain Groups/Researchers

• [http://cbm.bio.uniroma2.it/~manuela/ Manuela Helmer-Citterich]

• [http://www.uniroma2.it/dottorato/CESARENI.htm Giovanni Cesareni]