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| {{attachment:Software/EnrichmentMap/UserManual/enrichmentmap_logo3.png|Enrichment Map Logo|align="right"}}<<BR>> | |
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| == Essential Description == Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map. Click [[Software/EnrichmentMap/Description|here]] for more details and an analysis example. == Plugin Download == Updated at 30/09/2009 |
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| == Plugin Download == Updated at 01/07/2009: attachment:EnrichmentMap.jar (Build from SVN revision XXX) |
* [[attachment:EnrichmentMapPlugin_v0.9_beta.zip]] (v0.9 beta) |
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| Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs: [[attachment:EM_EBC_TestData.zip]] | |
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| Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs. attachment:EstradiolTreatedMCF7_v2.zip Guided tutorial for the test data: [:EnrichmentMap/Background/Tutorial: here] |
* Guided tutorial for the test data: [[Software/EnrichmentMap/Tutorial|here]] |
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[:Software/EnrichmentMaps/UserManual: User Guide Link] |
[[Software/EnrichmentMap/UserManual|User Guide Link]] |
Enrichment Map Plugin Download Page
Essential Description
Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map. Click here for more details and an analysis example.
Plugin Download
Updated at 30/09/2009
EnrichmentMapPlugin_v0.9_beta.zip (v0.9 beta)
Sample Data Download
Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs: EM_EBC_TestData.zip
Guided tutorial for the test data: here