|
Size: 790
Comment:
|
Size: 1295
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 5: | Line 5: |
| == Brief Description == Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map. Follow this link for [[Software/EnrichmentMap/Description|more details and an analysis example]]. |
|
| Line 6: | Line 10: |
| Updated at 30/09/2009 | Updated at 13/11/2009 |
| Line 8: | Line 12: |
| * [[attachment:EnrichmentMapPlugin_v0.9_beta.zip]] (v0.9 beta) Older Version (classic user-Interface): * [[attachment:EnrichmentMapPlugin_v0.4_beta.zip]] (v0.4 beta - Build: 70 from SVN: 254 by: revilo@!MacPro14 at: 2009/06/18) |
* [[attachment:EnrichmentMapPlugin_v0.12-beta.zip]] (v0.12 beta) Copy this plugin in the Cytoscape plugin directory. |
| Line 17: | Line 17: |
| * Guided tutorial for the test data: [[Software/EnrichmentMap/Tutorial|here]] | * [[Software/EnrichmentMap/Tutorial|Guided tutorial]] to load the test data into Enrichment Map |
Enrichment Map Plugin Download Page
Brief Description
Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map.
Follow this link for more details and an analysis example.
Plugin Download
Updated at 13/11/2009
EnrichmentMapPlugin_v0.12-beta.zip (v0.12 beta)
Copy this plugin in the Cytoscape plugin directory.
Sample Data Download
Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs: EM_EBC_TestData.zip
Guided tutorial to load the test data into Enrichment Map