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| == Essential Description == Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map. Click [[Software/EnrichmentMap/Description|here]] for more details and an analysis example. |
== Brief Description == Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map. Follow this link for [[Software/EnrichmentMap/Description|more details and an analysis example]]. |
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| Updated at 30/09/2009 | Updated at 13/11/2009 |
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| * [[attachment:EnrichmentMapPlugin_v0.9_beta.zip]] (v0.9 beta) | * [[attachment:EnrichmentMapPlugin_v0.12-beta.zip]] (v0.12 beta) Download the zipped file, move it to the Cytoscape plugin directory and unzip it. |
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| * Guided tutorial to load the test data into Enrichment Map: [[Software/EnrichmentMap/Tutorial|here]] | * [[Software/EnrichmentMap/Tutorial|Guided tutorial]] to load the test data into Enrichment Map |
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== Publications == * Isserlin R, Merico D, Alikhani-Koupaei R, Gramolini A, Bader GD, Emili A. <<BR>> '''''Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps.''''' <<BR>> Proteomics. '''''2010''''' Feb 1. <<BR>> PMID: 20127684 |
Enrichment Map Plugin Download Page
Brief Description
Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map.
Follow this link for more details and an analysis example.
Plugin Download
Updated at 13/11/2009
EnrichmentMapPlugin_v0.12-beta.zip (v0.12 beta)
Download the zipped file, move it to the Cytoscape plugin directory and unzip it.
Sample Data Download
Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs: EM_EBC_TestData.zip
Guided tutorial to load the test data into Enrichment Map
User Guide
Publications
Isserlin R, Merico D, Alikhani-Koupaei R, Gramolini A, Bader GD, Emili A.
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps.
Proteomics. 2010 Feb 1.
PMID: 20127684