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| {{attachment:Software/EnrichmentMap/UserManual/enrichmentmap_logo3.png|Enrichment Map Logo|align="right"}}<<BR>> | |
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| == Brief Description == Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map. |
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| Follow this link for [[Software/EnrichmentMap/Description|more details and an analysis example]]. | |
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| Updated at 13/11/2009 | |
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| Updated at 01/07/2009: attachment:EnrichmentMap.jar (v0.5 beta - Build: 97 from SVN: 279 by: revilo@REVILO-NB at: 2009/07/01) | * [[attachment:EnrichmentMapPlugin_v0.12-beta.zip]] (v0.12 beta) Download the zip, unzip and copy the .jar file in the Cytoscape plugin directory. == Sample Data Download == Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs: [[attachment:EM_EBC_TestData.zip]] |
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| == Sample Data Download == Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs. attachment:EstradiolTreatedMCF7_v2.zip Guided tutorial for the test data: [:EnrichmentMap/Background/Tutorial: here] |
* [[Software/EnrichmentMap/Tutorial|Guided tutorial]] to load the test data into Enrichment Map |
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| [[Software/EnrichmentMap/UserManual|User Guide Link]] | |
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| [:Software/EnrichmentMaps/UserManual: User Guide Link] | == Publications == * Isserlin R, Merico D, Alikhani-Koupaei R, Gramolini A, Bader GD, Emili A. <<BR>> '''''Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps.''''' <<BR>> Proteomics. '''''2010''''' Feb 1. <<BR>> PMID: 20127684 |
Enrichment Map Plugin Download Page
Brief Description
Enrichment Map is a Cytoscape plugin for functional enrichment visualization. Enrichment results have to be generated outside Enrichment Map, using any of the available methods. Gene-sets, such as pathways and Gene Ontology terms, are organized into a network (i.e. the "enrichment map"). In this way, mutually overlapping gene-sets cluster together, making interpretation easier. Enrichment Map also enables the comparison of two different enrichment results in the same map.
Follow this link for more details and an analysis example.
Plugin Download
Updated at 13/11/2009
EnrichmentMapPlugin_v0.12-beta.zip (v0.12 beta)
Download the zip, unzip and copy the .jar file in the Cytoscape plugin directory.
Sample Data Download
Estradiol-treated MCF7 breast cancer cells, 12hrs and 24hrs: EM_EBC_TestData.zip
Guided tutorial to load the test data into Enrichment Map
User Guide
Publications
Isserlin R, Merico D, Alikhani-Koupaei R, Gramolini A, Bader GD, Emili A.
Pathway analysis of dilated cardiomyopathy using global proteomic profiling and enrichment maps.
Proteomics. 2010 Feb 1.
PMID: 20127684