959
Comment:
|
891
|
Deletions are marked like this. | Additions are marked like this. |
Line 1: | Line 1: |
## page was renamed from nucleosome-prediction ## page was renamed from software |
#acl All:read |
GC-based nucleosome prediction
Uses GC content of a genome to predict nucleosome occupancy. Outputs the positions to a tab-delimited file with GC-smoothed values based on GC counts. This is done by binarizing the genome to 1 where C/G and 0 where A/T and then applying a Gaussian convolution to these binary values.
Author: Ron Ammar
Usage
gc_nucleosome_predictor.py [-hg] <Genome FASTA File> Options: -h, --help show this help message and exit -g GAUSSIAN_INTERVAL Interval length for Gaussian smoother; in bp) [138] --no-secondary-smoothing Turn off SMA (Simple Moving Average) to smooth afterwards for less jagged graph
Download predictor script gc_nucleosome_predictor.py.
This script is been designed for use on Linux or Mac systems.